IslandPathversion 1.0

IslandPath Analysis: Haloquadratum walsbyi DSM 16790



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 48.79 STD DEV: 3.84
Haloquadratum walsbyi DSM 16790, complete genome - 1..3132494
2610 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1827	 49.65	0	2210482..2212326	-	614	110668803	accA2	HQ2906A	-	biotin carboxylase 1, acyl-CoA carboxylase, alpha subunit 2
1828	 49.37	0	2212609..2213643	+	344	110668804	asd	HQ2908A	-	aspartate-semialdehyde dehydrogenase
1829	 49.02	0	2213853..2214872	-	339	110668805	serA	HQ2909A	-	phosphoglycerate dehydrogenase
1830	 50.07	0	2215021..2216454	+	477	110668806	fixC	HQ2910A	-	electron-transferring-flavoprotein dehydrogenase
1831	 52.67	+1	2217345..2217587	+	80	110668807	-	HQ2911A	-	hypothetical protein
1832	 57.03	+2	2217584..2217967	+	127	110668808	-	HQ2912A	-	integrase/recombinase
1833	 51.07	0	2218223..2218549	-	108	110668809	-	HQ2913A	-	hypothetical protein
1834	 52.33	0	2218555..2218854	-	99	110668810	-	HQ2914A	-	hypothetical protein
1835	 50.72	0	2219174..2219662	+	162	110668811	-	HQ2915A	-	cell surface glycoprotein
1836	 47.59	0	2219756..2220253	-	165	110668812	-	HQ2916A	-	hypothetical protein
1837	 50.12	0	2220379..2220807	-	142	110668813	-	HQ2917A	-	hypothetical protein
1838	 46.85	0	2221406..2222515	-	369	110668814	agxT	HQ2919A	-	aminotransferase class V (Serine--pyruvate aminotransferase 2; alanine--glyoxylate aminotransferase 2)
1839	 50.00	0	2222731..2223192	+	153	110668815	msrB	HQ2921A	-	peptide methionine sulfoxide reductase (R-form specific)
1840	 48.52	0	2223449..2223922	-	157	110668816	rpl11p	HQ2922A	-	50S ribosomal protein L11P
1841	 51.07	0	2224058..2225128	-	356	110668817	celM	HQ2923A	-	cellulase; endo-1,3(4)-beta-glucanase
1842	 41.41	-1	2225135..2225332	-	65	110668818	-	HQ2924A	-	hypothetical protein
1843	 52.11	0	2225360..2226376	+	338	110668819	mvk	HQ2925A	-	mevalonate kinase
1844	 48.93	0	2226379..2227269	+	296	110668820	-	HQ2926A	-	amino acid kinase
1845	 48.14	0	2227335..2228192	-	285	110668821	elaC	HQ2927A	-	ribonuclease Z (RNase Z) (tRNA 3 endonuclease)
1846	 48.51	0	2228324..2231209	+	961	110668822	lhr	HQ2928A	-	ATP-dependent helicase
1847	 50.09	0	2231412..2234234	-	940	110668823	dna2	HQ2930A	-	DNA2-like DNA replication helicase
1848	 50.00	0	2234374..2234949	+	191	110668824	-	HQ2931A	-	hypothetical protein
1849	 52.44	0	2235081..2235326	+	81	110668825	-	HQ2932A	-	hypothetical protein
1850	 49.90	0	2235450..2236457	-	335	110668826	-	HQ2933A	-	hypothetical protein
1851	 50.48	0	2236677..2237516	-	279	110668827	rps2P	HQ2934A	-	30S ribosomal protein S2
1852	 52.32	0	2237513..2238718	-	401	110668828	eno	HQ2935A	-	phosphopyruvate hydratase
1853	 52.53	0	2238721..2238918	-	65	110668829	rpoK	HQ2936A	-	DNA-directed RNA polymerase subunit K
1854	 49.23	0	2239373..2239567	-	64	110668830	rpoN	HQ2937A	-	DNA-directed RNA polymerase subunit N
1855	 52.88	+1	2239580..2239978	-	132	110668831	rps9p	HQ2938A	-	30S ribosomal protein S9P
1856	 49.77	0	2239972..2240409	-	145	110668832	rpl13p	HQ2939A	-	50S ribosomal protein L13P
1857	 49.57	0	2240406..2240756	-	116	110668833	rpl18R	HQ2940A	-	50S ribosomal protein L18e
1858	 50.06	0	2241206..2241994	-	262	110668834	rpoD	HQ2941A	-	DNA-directed RNA polymerase subunit D
1859	 51.26	0	2242001..2242396	-	131	110668835	rps11p	HQ2942A	-	30S ribosomal protein S11P
1860	 51.52	0	2242403..2242930	-	175	110668836	rps4p	HQ2943A	-	30S ribosomal protein S4
1861	 51.72	0	2242946..2243467	-	173	110668837	rps13p	HQ2944A	-	30S ribosomal protein S13P
1862	 49.83	0	2244015..2246123	+	702	110668838	stt3	HQ2945A	-	transmembrane oligosaccharyl transferase
1863	 46.77	0	2246301..2246501	+	66	110668839	-	HQ2946A	-	hypothetical protein
1864	 48.37	0	2246553..2247257	-	234	110668840	guaA	HQ2947A	-	guanosine monophosphate synthetase (glutamine-hydrolyzing) (GMP synthase)
1865	 49.69	0	2247532..2248503	-	323	110668841	moaA	HQ2948A	-	molybdenum cofactor biosynthesis protein A
1866	 51.01	0	2248648..2249688	+	346	110668842	mrp	HQ2949A	-	ATP-binding protein Mrp
1867	 60.26	+2	2250432..2250962	-	176	110668843	-	HQ2950A	-	hypothetical protein
1868	 56.23	+1	2251084..2251380	-	98	110668844	-	HQ2951A	-	hypothetical protein
1869	 52.28	0	2252574..2253122	+	182	110668845	cdc6_	HQ2952A	-	cell division control protein
1870	 52.82	+1	2253141..2253530	+	129	110668846	-	HQ2953A	-	cell division control protein cdc6-like protein
1871	 53.59	+1	2253892..2255130	+	412	110668847	-	HQ2954A	-	IS1341-type transposase
1872	 46.88	0	2255181..2255468	+	95	110668848	-	HQ2955A	-	cell division control protein cdc6-like protein
1873	 54.11	+1	2256429..2257049	+	206	110668849	-	HQ2956A	-	hypothetical protein
1874	 52.71	+1	2257354..2257611	+	85	110668850	-	HQ2957A	-	hypothetical protein
1875	 53.68	+1	2257657..2258064	+	135	110668851	-	HQ2958A	-	hypothetical protein
1876	 46.85	0	2258609..2259895	-	428	110668852	cdc6_	HQ2959A	-	cell division control protein cdc6-like protein
1877	 42.86	-1	2260719..2260970	-	83	110668853	-	HQ2960A	-	hypothetical protein
1878	 46.75	0	2261949..2262455	-	168	110668854	-	HQ2961A	-	protein N-acetyltransferase-like protein
1879	 48.51	0	2262733..2263839	+	368	110668855	livH	HQ2962A	-	ABC-type branched-chain amino acid transport system, permease protein I
1880	 48.54	0	2263836..2265269	+	477	110668856	livM	HQ2963A	-	ABC-type branched-chain amino acid transport system, permease protein II
1881	 51.10	0	2265262..2266122	+	286	110668857	livG	HQ2964A	-	ABC-type branched-chain amino acid transport systems, ATP-binding protein I
1882	 48.10	0	2266119..2266958	+	279	110668858	livF	HQ2965A	-	ABC-type branched-chain amino acid transport systems, ATP-binding protein II
1883	 51.52	0	2267538..2268296	-	252	110668859	-	HQ2966A	-	hypothetical protein
1884	 48.27	0	2268396..2269031	-	211	110668860	-	HQ2967A	-	hypothetical protein
1885	 48.37	0	2269232..2269384	+	50	110668861	-	HQ2968A	-	hypothetical protein
1886	 52.94	+1	2269647..2271023	-	458	110668862	livJ	HQ2969A	-	ABC-type branched-chain amino acid transport systems, substrate-binding protein
1887	 56.86	+2	2271344..2271649	-	101	110668863	-	HQ2971A	-	hypothetical protein
1888	 51.23	0	2272940..2273263	-	107	110668864	-	HQ2973A	-	hypothetical protein
1889	 48.99	0	2273668..2274753	+	361	110668865	-	HQ2974A	-	metal-dependent hydrolase of the TIM-barrel fold
1890	 52.47	0	2274759..2275547	+	262	110668866	-	HQ2975A	-	hypothetical protein
1891	 49.71	0	2276142..2276312	-	56	110668867	-	HQ2976A	-	hypothetical protein
1892	 51.47	0	2277617..2277820	-	67	110668868	-	HQ2977A	-	hypothetical protein
1893	 55.76	+1	2277866..2278186	-	106	110668869	-	HQ2978A	-	hypothetical protein
1894	 58.33	+2	2279551..2280054	-	167	110668870	-	HQ2980A	-	hypothetical protein
1895	 60.78	+2	2281451..2281705	-	84	110668871	-	HQ2982A	-	hypothetical protein
1896	 58.97	+2	2281983..2282216	-	77	110668872	-	HQ2983A	-	hypothetical protein
1897	 49.29	0	2282820..2284010	+	396	110668873	sqdB	HQ2984A	-	UDP-sulfoquinovose synthase
1898	 48.65	0	2284007..2285005	+	332	110668874	galE	HQ2985A	-	nucleoside-diphosphate-sugar epimerase ( UDP-glucose 4-epimerase)
1899	 50.00	0	2285002..2285991	+	329	110668875	galE	HQ2986A	-	nucleoside-diphosphate-sugar epimerase ( UDP-glucose 4-epimerase)
1900	 47.90	0	2286045..2286902	-	285	110668876	-	HQ2987A	-	transcriptional regulator
1901	 50.33	0	2287560..2288759	+	399	110668877	graD	HQ2989A	-	glucose-1-phosphate thymidylyltransferase
1902	 51.62	0	2288759..2290579	+	606	110668878	glmS	HQ2990A	-	glutamine--fructose-6-phosphate transaminase (isomerizing)
1903	 52.00	0	2290892..2291968	+	358	110668879	-	HQ2991A	-	hypothetical protein
1904	 51.24	0	2292439..2293650	+	403	110668880	graD	HQ2992A	-	glucose-1-phosphate thymidylyltransferase
1905	 45.27	0	2293711..2293953	-	80	110668881	-	HQ2993A	-	hypothetical protein
1906	 52.16	0	2294438..2296285	-	615	110668882	sdhA	HQ2994A	-	succinate dehydrogenase, subunit A (flavoprotein)
1907	 46.96	0	2296342..2297214	-	290	110668883	sdhB	HQ2995A	-	succinate dehydrogenase, subunit B (iron-sulfur protein)
1908	 52.15	0	2297381..2297752	-	123	110668884	sdhD	HQ2996A	-	succinate dehydrogenase, subunit D (membrane anchor protein)
1909	 51.01	0	2297752..2298147	-	131	110668885	sdhC	HQ2997A	-	succinate dehydrogenase, subunit C (cytochrome b-556)
1910	 47.14	0	2298460..2298843	-	127	110668886	-	HQ2998A	-	hypothetical protein
1911	 47.89	0	2299285..2299758	+	157	110668887	-	HQ2999A	-	hypothetical protein
1912	 48.46	0	2300501..2302516	-	671	110668888	spoVR	HQ3000A	-	spore cortext formation protein
1913	 49.52	0	2302744..2304084	-	446	110668889	-	HQ3001A	-	hypothetical protein
1914	 49.85	0	2304075..2306351	-	758	110668890	prkA	HQ3002A	-	serine protein kinase
1915	 47.97	0	2306695..2308764	-	689	110668891	prkA	HQ3003A	-	serine protein kinase
1916	 48.37	0	2309135..2309593	+	152	110668892	-	HQ3004A	-	hypothetical protein
1917	 49.57	0	2309689..2310507	-	272	110668893	-	HQ3005A	-	succinylglutamate desuccinylase-like protein
1918	 46.87	0	2310848..2311342	+	164	110668894	-	HQ3006A	-	hypothetical protein
1919	 48.77	0	2311546..2313003	+	485	110668895	-	HQ3007A	-	beta,beta-carotene 9',10'-dioxygenase 2
1920	 47.78	0	2313047..2313226	-	59	110668896	-	HQ3008A	-	hypothetical protein
1921	 50.68	0	2313260..2313703	-	147	110668897	-	HQ3009A	-	hypothetical protein
1922	 50.10	0	2314177..2315190	-	337	110668898	guaD	HQ3010A	-	nucleoside deaminase (cytosine deaminase, guanine deaminase)
1923	 49.35	0	2315382..2316617	-	411	110668899	-	HQ3011A	-	hypothetical protein
1924	 48.49	0	2316848..2317909	+	353	110668900	-	HQ3012A	-	LPPG:FO 2-phospho-L-lactate transferase
1925	 50.32	0	2317909..2318685	+	258	110668901	-	HQ3013A	-	tRNA-dihydrouridine synthase
1926	 53.15	+1	2318744..2319601	+	285	110668902	citG	HQ3014A	-	triphosphoribosyl-dephospho-CoA synthase
48.79	MEAN

3.84	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.