IslandPathversion 1.0

IslandPath Analysis: Haloquadratum walsbyi DSM 16790



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 48.79 STD DEV: 3.84
Haloquadratum walsbyi DSM 16790, complete genome - 1..3132494
2610 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1782	 49.47	0	2167497..2168537	+	346	110668758	crtB	HQ2860A	-	geranylgeranyl-diphosphate geranylgeranyltransferase (phytoene synthase)
1783	 47.47	0	2168848..2169696	-	282	110668759	-	HQ2861A	-	carotenoid biosynthesis protein
1784	 46.00	0	2169689..2170564	-	291	110668760	ubiA	HQ2862A	-	prenyltransferase
1785	 47.04	0	2170580..2172082	-	500	110668761	crtI	HQ2863A	-	phytoene dehydrogenase (phytoene desaturase)
1786	 46.32	0	2172438..2172845	+	135	110668762	-	HQ2864A	-	stress response protein
1787	 47.27	0	2173253..2173912	+	219	110668763	-	HQ2865A	-	hypothetical protein
1788	 48.30	0	2173937..2174791	+	284	110668764	-	HQ2866A	-	metalloenzyme, TatD related DNAse
1789	 46.77	0	2175279..2175866	+	195	110668765	-	HQ2867A	-	hypothetical protein
1790	 46.49	0	2176203..2177669	+	488	110668766	mvaB	HQ2868A	-	hydroxymethylglutaryl-CoA synthase
1791	 49.09	0	2178030..2178740	-	236	110668767	-	HQ2869A	-	transcriptional regulator
1792	 48.65	0	2178991..2179695	+	234	110668768	-	HQ2870A	-	hypothetical protein
1793	 46.63	0	2179800..2180393	+	197	110668769	-	HQ2871A	-	acetyltransferase
1794	 47.84	0	2180530..2181039	+	169	110668770	-	HQ2872A	-	hypothetical protein
1795	 49.07	0	2181109..2182347	-	412	110668771	alaS	HQ2873A	-	alanine--tRNA ligase
1796	 51.74	0	2182489..2183004	-	171	110668772	-	HQ2874A	-	transcriptional regulator
1797	 55.69	+1	2184972..2185226	-	84	110668773	-	HQ2876A	-	hypothetical protein
1798	 41.00	-2	2185884..2186444	+	186	110668774	-	HQ2877A	-	hypothetical protein
1799	 49.72	0	2186574..2187464	+	296	110668775	ksgA	HQ2878A	-	dimethyladenosine transferase
1800	 48.51	0	2187461..2188099	+	212	110668776	hemK	HQ2879A	-	protein methyltransferase
1801	 46.74	0	2188161..2189234	+	357	110668777	metE	HQ2880A	-	5-methyltetrahydropteroyltriglutamate--homocyste ine S-methyltransferase, methionine synthase II
1802	 47.76	0	2189234..2190328	+	364	110668778	metE	HQ2881A	-	methionine synthase
1803	 49.27	0	2190523..2190999	-	158	110668779	ndk	HQ2882A	-	nucleoside-diphosphate kinase
1804	 49.48	0	2190996..2191187	-	63	110668780	rpl24R	HQ2883A	-	ribosomal protein L24.eR
1805	 49.78	0	2191191..2191415	-	74	110668781	rps28e	HQ2884A	-	30S ribosomal protein S28e
1806	 48.76	0	2191422..2191784	-	120	110668782	rpl7ae	HQ2885A	-	50S ribosomal protein L7Ae
1807	 49.38	0	2192204..2192689	+	161	110668783	-	HQ2886A	-	hypothetical protein
1808	 50.54	0	2193132..2193776	-	214	110668784	-	HQ2887A	-	hypothetical protein
1809	 48.84	0	2193804..2195564	-	586	110668785	gltX	HQ2888A	-	glutamyl-tRNA synthetase
1810	 49.57	0	2195740..2196786	-	348	110668786	idsA	HQ2889A	-	trifunctional short-chain (E)-prenyl diphosphate synthase ( dimethylallyltransferase / geranyltranstransferase / farnesytranstransferase)
1811	 45.90	0	2196788..2198140	-	450	110668787	-	HQ2890A	-	hydrolase
1812	 46.58	0	2198718..2198951	+	77	110668788	-	HQ2891A	-	small nuclear ribonucleoprotein (snRNP)-like protein
1813	 46.89	0	2198948..2199124	+	58	110668789	rpl37e	HQ2892A	-	50S ribosomal protein L37e
1814	 49.24	0	2199832..2201811	+	659	110668790	purF	HQ2893A	-	amidophosphoribosyltransferase
1815	 46.97	0	2201952..2202677	-	241	110668791	-	HQ2894A	-	hypothetical protein
1816	 43.70	-1	2202711..2203067	-	118	110668792	rpoF	HQ2895A	-	DNA-directed RNA polymerase subunit F
1817	 48.80	0	2203180..2203470	-	96	110668793	rpl21R	HQ2896A	-	50S ribosomal protein L21e
1818	 53.26	+1	2203593..2203868	+	91	110668794	-	HQ2897A	-	hypothetical protein
1819	 51.31	0	2204049..2204315	-	88	110668795	ef1B	HQ2898A	-	elongation factor 1-beta
1820	 48.89	0	2204318..2204497	-	59	110668796	-	HQ2899A	-	Zn-ribbon RNA-binding protein
1821	 51.99	0	2204680..2206035	-	451	110668797	-	HQ2900A	-	hypothetical protein
1822	 52.46	0	2206263..2206607	-	114	110668798	rpl12p	HQ2901A	-	50S ribosomal protein L12P
1823	 49.81	0	2206719..2207798	-	359	110668799	rplP0	HQ2902A	-	acidic ribosomal protein P0
1824	 51.33	0	2207795..2208433	-	212	110668800	rpl1P	HQ2903A	-	50S ribosomal protein L1P
1825	 49.48	0	2208732..2209022	+	96	110668801	-	HQ2904A	-	hypothetical protein
1826	 48.72	0	2209325..2210299	-	324	110668802	birA	HQ2905A	-	biotin--[acetyl-CoA-carboxylase] ligase
1827	 49.65	0	2210482..2212326	-	614	110668803	accA2	HQ2906A	-	biotin carboxylase 1, acyl-CoA carboxylase, alpha subunit 2
1828	 49.37	0	2212609..2213643	+	344	110668804	asd	HQ2908A	-	aspartate-semialdehyde dehydrogenase
1829	 49.02	0	2213853..2214872	-	339	110668805	serA	HQ2909A	-	phosphoglycerate dehydrogenase
1830	 50.07	0	2215021..2216454	+	477	110668806	fixC	HQ2910A	-	electron-transferring-flavoprotein dehydrogenase
1831	 52.67	+1	2217345..2217587	+	80	110668807	-	HQ2911A	-	hypothetical protein
1832	 57.03	+2	2217584..2217967	+	127	110668808	-	HQ2912A	-	integrase/recombinase
1833	 51.07	0	2218223..2218549	-	108	110668809	-	HQ2913A	-	hypothetical protein
1834	 52.33	0	2218555..2218854	-	99	110668810	-	HQ2914A	-	hypothetical protein
1835	 50.72	0	2219174..2219662	+	162	110668811	-	HQ2915A	-	cell surface glycoprotein
1836	 47.59	0	2219756..2220253	-	165	110668812	-	HQ2916A	-	hypothetical protein
1837	 50.12	0	2220379..2220807	-	142	110668813	-	HQ2917A	-	hypothetical protein
1838	 46.85	0	2221406..2222515	-	369	110668814	agxT	HQ2919A	-	aminotransferase class V (Serine--pyruvate aminotransferase 2; alanine--glyoxylate aminotransferase 2)
1839	 50.00	0	2222731..2223192	+	153	110668815	msrB	HQ2921A	-	peptide methionine sulfoxide reductase (R-form specific)
1840	 48.52	0	2223449..2223922	-	157	110668816	rpl11p	HQ2922A	-	50S ribosomal protein L11P
1841	 51.07	0	2224058..2225128	-	356	110668817	celM	HQ2923A	-	cellulase; endo-1,3(4)-beta-glucanase
1842	 41.41	-1	2225135..2225332	-	65	110668818	-	HQ2924A	-	hypothetical protein
1843	 52.11	0	2225360..2226376	+	338	110668819	mvk	HQ2925A	-	mevalonate kinase
1844	 48.93	0	2226379..2227269	+	296	110668820	-	HQ2926A	-	amino acid kinase
1845	 48.14	0	2227335..2228192	-	285	110668821	elaC	HQ2927A	-	ribonuclease Z (RNase Z) (tRNA 3 endonuclease)
1846	 48.51	0	2228324..2231209	+	961	110668822	lhr	HQ2928A	-	ATP-dependent helicase
1847	 50.09	0	2231412..2234234	-	940	110668823	dna2	HQ2930A	-	DNA2-like DNA replication helicase
1848	 50.00	0	2234374..2234949	+	191	110668824	-	HQ2931A	-	hypothetical protein
1849	 52.44	0	2235081..2235326	+	81	110668825	-	HQ2932A	-	hypothetical protein
1850	 49.90	0	2235450..2236457	-	335	110668826	-	HQ2933A	-	hypothetical protein
1851	 50.48	0	2236677..2237516	-	279	110668827	rps2P	HQ2934A	-	30S ribosomal protein S2
1852	 52.32	0	2237513..2238718	-	401	110668828	eno	HQ2935A	-	phosphopyruvate hydratase
1853	 52.53	0	2238721..2238918	-	65	110668829	rpoK	HQ2936A	-	DNA-directed RNA polymerase subunit K
1854	 49.23	0	2239373..2239567	-	64	110668830	rpoN	HQ2937A	-	DNA-directed RNA polymerase subunit N
1855	 52.88	+1	2239580..2239978	-	132	110668831	rps9p	HQ2938A	-	30S ribosomal protein S9P
1856	 49.77	0	2239972..2240409	-	145	110668832	rpl13p	HQ2939A	-	50S ribosomal protein L13P
1857	 49.57	0	2240406..2240756	-	116	110668833	rpl18R	HQ2940A	-	50S ribosomal protein L18e
1858	 50.06	0	2241206..2241994	-	262	110668834	rpoD	HQ2941A	-	DNA-directed RNA polymerase subunit D
1859	 51.26	0	2242001..2242396	-	131	110668835	rps11p	HQ2942A	-	30S ribosomal protein S11P
1860	 51.52	0	2242403..2242930	-	175	110668836	rps4p	HQ2943A	-	30S ribosomal protein S4
1861	 51.72	0	2242946..2243467	-	173	110668837	rps13p	HQ2944A	-	30S ribosomal protein S13P
1862	 49.83	0	2244015..2246123	+	702	110668838	stt3	HQ2945A	-	transmembrane oligosaccharyl transferase
1863	 46.77	0	2246301..2246501	+	66	110668839	-	HQ2946A	-	hypothetical protein
1864	 48.37	0	2246553..2247257	-	234	110668840	guaA	HQ2947A	-	guanosine monophosphate synthetase (glutamine-hydrolyzing) (GMP synthase)
1865	 49.69	0	2247532..2248503	-	323	110668841	moaA	HQ2948A	-	molybdenum cofactor biosynthesis protein A
1866	 51.01	0	2248648..2249688	+	346	110668842	mrp	HQ2949A	-	ATP-binding protein Mrp
1867	 60.26	+2	2250432..2250962	-	176	110668843	-	HQ2950A	-	hypothetical protein
1868	 56.23	+1	2251084..2251380	-	98	110668844	-	HQ2951A	-	hypothetical protein
1869	 52.28	0	2252574..2253122	+	182	110668845	cdc6_	HQ2952A	-	cell division control protein
1870	 52.82	+1	2253141..2253530	+	129	110668846	-	HQ2953A	-	cell division control protein cdc6-like protein
1871	 53.59	+1	2253892..2255130	+	412	110668847	-	HQ2954A	-	IS1341-type transposase
1872	 46.88	0	2255181..2255468	+	95	110668848	-	HQ2955A	-	cell division control protein cdc6-like protein
1873	 54.11	+1	2256429..2257049	+	206	110668849	-	HQ2956A	-	hypothetical protein
1874	 52.71	+1	2257354..2257611	+	85	110668850	-	HQ2957A	-	hypothetical protein
1875	 53.68	+1	2257657..2258064	+	135	110668851	-	HQ2958A	-	hypothetical protein
1876	 46.85	0	2258609..2259895	-	428	110668852	cdc6_	HQ2959A	-	cell division control protein cdc6-like protein
1877	 42.86	-1	2260719..2260970	-	83	110668853	-	HQ2960A	-	hypothetical protein
1878	 46.75	0	2261949..2262455	-	168	110668854	-	HQ2961A	-	protein N-acetyltransferase-like protein
1879	 48.51	0	2262733..2263839	+	368	110668855	livH	HQ2962A	-	ABC-type branched-chain amino acid transport system, permease protein I
1880	 48.54	0	2263836..2265269	+	477	110668856	livM	HQ2963A	-	ABC-type branched-chain amino acid transport system, permease protein II
1881	 51.10	0	2265262..2266122	+	286	110668857	livG	HQ2964A	-	ABC-type branched-chain amino acid transport systems, ATP-binding protein I
48.79	MEAN

3.84	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.