IslandPathversion 1.0

IslandPath Analysis: Haloquadratum walsbyi DSM 16790



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 48.79 STD DEV: 3.84
Haloquadratum walsbyi DSM 16790, complete genome - 1..3132494
2610 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1723	 51.20	0	2106602..2108230	-	542	110668699	-	HQ2800A	-	translation elongation factor aEF-1 alpha subunit-like protein
1724	 50.87	0	2108901..2109419	-	172	110668700	dnaJ	HQ2801A	-	chaperone protein dnaJ
1725	 51.98	0	2109764..2111002	+	412	110668701	-	HQ2802A	-	hypothetical protein
1726	 52.86	+1	2111152..2111361	+	69	110668702	-	HQ2803A	-	hypothetical protein
1727	 42.22	-1	2112830..2113009	+	59	110668703	-	HQ2804A	-	hypothetical protein
1728	 45.34	0	2113045..2113752	-	235	110668704	livF	HQ2805A	-	ABC-type branched-chain amino acid transport systems, ATP-binding protein I
1729	 47.09	0	2113754..2114785	-	343	110668705	livG	HQ2806A	-	ABC-type branched-chain amino acid transport systems, ATP-binding protein II
1730	 47.57	0	2114782..2116656	-	624	110668706	livM	HQ2807A	-	ABC-type branched-chain amino acid transport system, permease protein II
1731	 47.53	0	2116659..2118116	-	485	110668707	livH	HQ2808A	-	ABC-type branched-chain amino acid transport system, permease protein I
1732	 48.30	0	2118220..2119575	+	451	110668708	livJ	HQ2809A	-	ABC-type branched-chain amino acid transport systems, substrate-binding protein
1733	 48.34	0	2119942..2121240	+	432	110668709	-	HQ2810A	-	hypothetical protein
1734	 41.96	-1	2121378..2121632	-	84	110668710	-	HQ2811A	-	hypothetical protein
1735	 44.98	0	2121737..2122045	-	102	110668711	-	HQ2812A	-	hypothetical protein
1736	 45.48	0	2122263..2122682	+	139	110668712	-	HQ2813A	-	hypothetical protein
1737	 43.10	-1	2122710..2123723	-	337	110668713	-	HQ2814A	-	signal-transducing histidine kinase
1738	 40.21	-2	2124237..2124527	-	96	110668714	-	HQ2815A	-	hypothetical protein
1739	 48.52	0	2125317..2125553	+	78	110668715	-	HQ2816A	-	hypothetical protein
1740	 55.46	+1	2125671..2126036	-	121	110668716	-	HQ2817A	-	hypothetical protein
1741	 43.04	-1	2126475..2126711	+	78	110668717	-	HQ2818A	-	hypothetical protein
1742	 49.39	0	2126989..2128458	-	489	110668718	secY	HQ2819A	-	preprotein translocase subunit SecY
1743	 48.48	0	2128474..2128968	-	164	110668719	rpl15p	HQ2820A	-	50S ribosomal protein L15P
1744	 50.54	0	2128965..2129429	-	154	110668720	rpl30p	HQ2821A	-	50S ribosomal protein L30P
1745	 50.91	0	2129429..2130088	-	219	110668721	rps5p	HQ2822A	-	30S ribosomal protein S5P
1746	 52.27	0	2130085..2130702	-	205	110668722	rpl18p	HQ2823A	-	50S ribosomal protein L18P
1747	 51.52	0	2130702..2131163	-	153	110668723	rpl19e	HQ2824A	-	50S ribosomal protein L19e
1748	 51.99	0	2131160..2132113	-	317	110668724	rpl32R	HQ2825A	-	50S ribosomal protein L32e
1749	 49.73	0	2132115..2132663	-	182	110668725	rpl6p	HQ2826A	-	50S ribosomal protein L6P
1750	 47.84	0	2132668..2133060	-	130	110668726	rps8p	HQ2827A	-	30S ribosomal protein S8P
1751	 48.59	0	2133063..2133239	-	58	110668727	rps14P	HQ2828A	-	30S ribosomal protein S14P
1752	 50.00	0	2133246..2133803	-	185	110668728	rpl5p	HQ2829A	-	50S ribosomal protein L5P
1753	 47.49	0	2133800..2134597	-	265	110668729	rps4R	HQ2830A	-	30S ribosomal protein S4e
1754	 49.17	0	2134594..2134953	-	119	110668730	rpl24p	HQ2831A	-	50S ribosomal protein L24P
1755	 51.88	0	2134963..2135361	-	132	110668731	rpl14p	HQ2832A	-	50S ribosomal protein L14P
1756	 56.16	+1	2135361..2135693	-	110	110668732	rps17p	HQ2833A	-	30S ribosomal protein S17P
1757	 49.34	0	2135684..2136370	-	228	110668733	rnpA	HQ2834A	-	ribonuclease P protein component 1 (RNase P component 1)
1758	 53.07	+1	2136395..2136622	-	75	110668734	rpl29	HQ2835A	-	50S ribosomal protein L29
1759	 49.69	0	2136623..2137594	-	323	110668735	rps3p	HQ2836A	-	30S ribosomal protein S3P
1760	 47.17	0	2137594..2138070	-	158	110668736	rpl22p	HQ2837A	-	50S ribosomal protein L22P
1761	 48.94	0	2138097..2138519	-	140	110668737	rps19p	HQ2838A	-	30S ribosomal protein S19P
1762	 51.64	0	2138664..2139395	-	243	110668738	rpl2p	HQ2839A	-	50S ribosomal protein L2P
1763	 38.82	-2	2139399..2139653	-	84	110668739	rplW	HQ2840A	-	50S ribosomal protein L23
1764	 51.67	0	2139650..2140396	-	248	110668740	rpl4lp	HQ2841A	-	50S ribosomal protein L4P
1765	 53.10	+1	2140403..2141419	-	338	110668741	rpl3p	HQ2842A	-	50S ribosomal protein L3P
1766	 55.37	+1	2141424..2142335	-	303	110668742	-	HQ2843A	-	rpl operon protein
1767	 48.06	0	2143012..2143758	+	248	110668743	-	HQ2844A	-	hypothetical protein
1768	 50.00	0	2143835..2144392	-	185	110668744	-	HQ2845A	-	hypothetical protein
1769	 48.48	0	2144396..2144923	-	175	110668745	-	HQ2846A	-	hypothetical protein
1770	 50.37	0	2145407..2146609	-	400	110668746	idiB	HQ2847A	-	isopentenyl-diphosphate delta-isomerase
1771	 57.30	+2	2147598..2149754	+	718	110668747	capA	HQ2849A	-	poly-gamma-glutamate biosynthesis/capsule biosynthesis protein
1772	 48.20	0	2150200..2150811	-	203	110668748	-	HQ2850A	-	translation initiation factor IF-2 subunit beta
1773	 45.45	0	2151392..2151622	-	76	110668749	-	HQ2851A	-	hypothetical protein
1774	 48.98	0	2151812..2152936	-	374	110668750	dhs	HQ2852A	-	putative deoxyhypusine synthase
1775	 46.82	0	2153558..2154328	-	256	110668751	nif3	HQ2853A	-	hypothetical protein
1776	 48.00	0	2154525..2156276	-	583	110668752	-	HQ2854A	-	hypothetical protein
1777	 46.83	0	2156386..2156637	-	83	110668753	-	HQ2855A	-	hypothetical protein
1778	 44.68	-1	2156640..2157767	-	375	110668754	-	HQ2856A	-	hypothetical protein
1779	 47.93	0	2158212..2159081	-	289	110668755	sucD	HQ2857A	-	succinate--CoA ligase, alpha subunit (ADP-forming)
1780	 47.38	0	2159078..2160223	-	381	110668756	sucC	HQ2858A	-	succinate--CoA ligase beta subunit (ADP-forming)
1781	 47.87	0	2160650..2166379	+	1909	110668757	nrdA	HQ2859A	-	ribonucleoside-diphosphate reductase alpha subunit (intein-containing)
1782	 49.47	0	2167497..2168537	+	346	110668758	crtB	HQ2860A	-	geranylgeranyl-diphosphate geranylgeranyltransferase (phytoene synthase)
1783	 47.47	0	2168848..2169696	-	282	110668759	-	HQ2861A	-	carotenoid biosynthesis protein
1784	 46.00	0	2169689..2170564	-	291	110668760	ubiA	HQ2862A	-	prenyltransferase
1785	 47.04	0	2170580..2172082	-	500	110668761	crtI	HQ2863A	-	phytoene dehydrogenase (phytoene desaturase)
1786	 46.32	0	2172438..2172845	+	135	110668762	-	HQ2864A	-	stress response protein
1787	 47.27	0	2173253..2173912	+	219	110668763	-	HQ2865A	-	hypothetical protein
1788	 48.30	0	2173937..2174791	+	284	110668764	-	HQ2866A	-	metalloenzyme, TatD related DNAse
1789	 46.77	0	2175279..2175866	+	195	110668765	-	HQ2867A	-	hypothetical protein
1790	 46.49	0	2176203..2177669	+	488	110668766	mvaB	HQ2868A	-	hydroxymethylglutaryl-CoA synthase
1791	 49.09	0	2178030..2178740	-	236	110668767	-	HQ2869A	-	transcriptional regulator
1792	 48.65	0	2178991..2179695	+	234	110668768	-	HQ2870A	-	hypothetical protein
1793	 46.63	0	2179800..2180393	+	197	110668769	-	HQ2871A	-	acetyltransferase
1794	 47.84	0	2180530..2181039	+	169	110668770	-	HQ2872A	-	hypothetical protein
1795	 49.07	0	2181109..2182347	-	412	110668771	alaS	HQ2873A	-	alanine--tRNA ligase
1796	 51.74	0	2182489..2183004	-	171	110668772	-	HQ2874A	-	transcriptional regulator
1797	 55.69	+1	2184972..2185226	-	84	110668773	-	HQ2876A	-	hypothetical protein
1798	 41.00	-2	2185884..2186444	+	186	110668774	-	HQ2877A	-	hypothetical protein
1799	 49.72	0	2186574..2187464	+	296	110668775	ksgA	HQ2878A	-	dimethyladenosine transferase
1800	 48.51	0	2187461..2188099	+	212	110668776	hemK	HQ2879A	-	protein methyltransferase
1801	 46.74	0	2188161..2189234	+	357	110668777	metE	HQ2880A	-	5-methyltetrahydropteroyltriglutamate--homocyste ine S-methyltransferase, methionine synthase II
1802	 47.76	0	2189234..2190328	+	364	110668778	metE	HQ2881A	-	methionine synthase
1803	 49.27	0	2190523..2190999	-	158	110668779	ndk	HQ2882A	-	nucleoside-diphosphate kinase
1804	 49.48	0	2190996..2191187	-	63	110668780	rpl24R	HQ2883A	-	ribosomal protein L24.eR
1805	 49.78	0	2191191..2191415	-	74	110668781	rps28e	HQ2884A	-	30S ribosomal protein S28e
1806	 48.76	0	2191422..2191784	-	120	110668782	rpl7ae	HQ2885A	-	50S ribosomal protein L7Ae
1807	 49.38	0	2192204..2192689	+	161	110668783	-	HQ2886A	-	hypothetical protein
1808	 50.54	0	2193132..2193776	-	214	110668784	-	HQ2887A	-	hypothetical protein
1809	 48.84	0	2193804..2195564	-	586	110668785	gltX	HQ2888A	-	glutamyl-tRNA synthetase
1810	 49.57	0	2195740..2196786	-	348	110668786	idsA	HQ2889A	-	trifunctional short-chain (E)-prenyl diphosphate synthase ( dimethylallyltransferase / geranyltranstransferase / farnesytranstransferase)
1811	 45.90	0	2196788..2198140	-	450	110668787	-	HQ2890A	-	hydrolase
1812	 46.58	0	2198718..2198951	+	77	110668788	-	HQ2891A	-	small nuclear ribonucleoprotein (snRNP)-like protein
1813	 46.89	0	2198948..2199124	+	58	110668789	rpl37e	HQ2892A	-	50S ribosomal protein L37e
1814	 49.24	0	2199832..2201811	+	659	110668790	purF	HQ2893A	-	amidophosphoribosyltransferase
1815	 46.97	0	2201952..2202677	-	241	110668791	-	HQ2894A	-	hypothetical protein
1816	 43.70	-1	2202711..2203067	-	118	110668792	rpoF	HQ2895A	-	DNA-directed RNA polymerase subunit F
1817	 48.80	0	2203180..2203470	-	96	110668793	rpl21R	HQ2896A	-	50S ribosomal protein L21e
1818	 53.26	+1	2203593..2203868	+	91	110668794	-	HQ2897A	-	hypothetical protein
1819	 51.31	0	2204049..2204315	-	88	110668795	ef1B	HQ2898A	-	elongation factor 1-beta
1820	 48.89	0	2204318..2204497	-	59	110668796	-	HQ2899A	-	Zn-ribbon RNA-binding protein
1821	 51.99	0	2204680..2206035	-	451	110668797	-	HQ2900A	-	hypothetical protein
1822	 52.46	0	2206263..2206607	-	114	110668798	rpl12p	HQ2901A	-	50S ribosomal protein L12P
48.79	MEAN

3.84	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.