IslandPathversion 1.0

IslandPath Analysis: Haloquadratum walsbyi DSM 16790



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 48.79 STD DEV: 3.84
Haloquadratum walsbyi DSM 16790, complete genome - 1..3132494
2610 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1638	 47.57	0	2007494..2008378	+	294	110668614	-	HQ2712A	-	hypothetical protein
1639	 46.76	0	2008415..2009263	-	282	110668615	tif2Ba	HQ2713A	-	translation initiation factor 2B alpha chain
1640	 47.20	0	2009325..2010038	-	237	110668616	-	HQ2714A	-	peptidoglycan binding protein
1641	 47.39	0	2010234..2010482	+	82	110668617	-	HQ2715A	-	hypothetical protein
1642	 50.27	0	2010479..2012740	+	753	110668618	-	HQ2716A	-	AAA-type ATPase (transitional ATPase homolog)
1643	 45.22	0	2012830..2013300	-	156	110668619	bcp	HQ2717A	-	peroxiredoxin (thioredoxin-dependent hydroperoxide peroxidase)
1644	 48.70	0	2013348..2014772	-	474	110668620	-	HQ2718A	-	primase operon protein
1645	 48.70	0	2015096..2016253	-	385	110668621	priA	HQ2719A	-	DNA primase small subunit
1646	 52.58	0	2016966..2018378	+	470	110668622	hisD	HQ2720A	-	histidinol dehydrogenase
1647	 48.91	0	2018705..2019070	+	121	110668623	-	HQ2721A	-	hesB/IscA family protein
1648	 49.59	0	2019416..2019778	+	120	110668624	-	HQ2722A	-	hypothetical protein
1649	 48.10	0	2020055..2021476	+	473	110668625	ushA	HQ2723A	-	5'-nucleotidase; 2',3'-cyclic-nucleotide 2'-phosphodiesterase; UDP-sugar hydrolase
1650	 46.86	0	2021776..2022189	+	137	110668626	-	HQ2724A	-	hypothetical protein
1651	 45.38	0	2022521..2023666	-	381	110668627	msc	HQ2725A	-	mechanosensitive ion channel
1652	 48.49	0	2024062..2025123	+	353	110668628	trmB	HQ2726A	-	sugar-specific transcriptional regulator TrmB
1653	 49.42	0	2025210..2025638	+	142	110668629	-	HQ2727A	-	hypothetical protein
1654	 54.57	+1	2025878..2027158	+	426	110668630	-	HQ2728A	-	IS1341-type transposase
1655	 50.48	0	2027483..2029033	+	516	110668631	rfcB	HQ2729A	-	replication factor C large subunit
1656	 46.26	0	2029134..2029868	-	244	110668632	glnQ	HQ2730A	-	ABC-type glutamine/glutamate/polar amino acids transport system, ATP-binding protein
1657	 46.78	0	2029861..2030715	-	284	110668633	glnP	HQ2731A	-	ABC-type glutamine/glutamate/polar amino acids transport system, permease protein
1658	 44.85	-1	2030803..2031705	-	300	110668634	glnH	HQ2732A	-	ABC-type glutamine/glutamate/polar amino acids transport system, substrate-binding protein
1659	 50.06	0	2032136..2032972	-	278	110668635	ctaA	HQ2733A	-	cytochrome-c-aa3 oxidase assembly factor CtaA
1660	 49.01	0	2033484..2034593	+	369	110668636	-	HQ2735A	-	metallopeptidase
1661	 47.17	0	2034710..2036956	+	748	110668637	mdh	HQ2736A	-	malic enzyme
1662	 51.46	0	2037807..2038595	-	262	110668638	-	HQ2737A	-	hypothetical protein
1663	 49.25	0	2038881..2039816	+	311	110668639	rhaT	HQ2738A	-	DMT superfamily drug/metabolite transporter
1664	 46.57	0	2040524..2040931	-	135	110668640	-	HQ2739A	-	hypothetical protein
1665	 49.92	0	2041078..2041692	-	204	110668641	cmk	HQ2740A	-	cytidylate kinase
1666	 45.91	0	2041924..2042583	+	219	110668642	-	HQ2741A	-	hypothetical protein
1667	 49.31	0	2042747..2042890	+	47	110668643	-	HQ2742A	-	hypothetical protein
1668	 45.05	0	2042986..2043318	+	110	110668644	-	HQ2743A	-	ribosomal protein S10-like protein
1669	 49.30	0	2043374..2044726	+	450	110668645	-	HQ2744A	-	indole-3-acetyl-L-aspartic acid hydrolase
1670	 50.00	0	2045619..2045810	-	63	110668646	-	HQ2745A	-	hypothetical protein
1671	 43.70	-1	2045858..2046889	-	343	110668647	phoU	HQ2746A	-	transport system regulatory protein
1672	 50.95	0	2046939..2048039	-	366	110668648	-	HQ2747A	-	hypothetical protein
1673	 50.31	0	2048682..2048840	-	52	110668649	-	HQ2748A	-	hypothetical protein
1674	 42.80	-1	2049242..2050477	+	411	110668650	-	HQ2749A	-	signal-transducing histidine kinase
1675	 46.19	0	2051100..2053013	+	637	110668651	bat	HQ2750A	-	bacterio-opsin activator
1676	 46.12	0	2053234..2053671	-	145	110668652	-	HQ2751A	-	response regulator / transcription regulator
1677	 49.63	0	2055077..2057935	+	952	110668653	lhr	HQ2752A	-	Lhr-like helicase
1678	 49.91	0	2058037..2060334	-	765	110668654	cdc48	HQ2753A	-	AAA-type ATPase (transitional ATPase homolog)
1679	 48.10	0	2060447..2061787	+	446	110668655	livJ	HQ2754A	-	ABC-type branched-chain amino acid transport system, substrate-binding protein
1680	 46.10	0	2061803..2062687	+	294	110668656	livH	HQ2755A	-	ABC-type branched-chain amino acid transport system, permease protein I
1681	 45.13	0	2062687..2063754	+	355	110668657	livM	HQ2756A	-	ABC-type branched-chain amino acid transport systems, permease protein II
1682	 45.72	0	2063813..2064595	+	260	110668658	livG	HQ2757A	-	ABC-type branched-chain amino acid transport systems, ATP-binding protein I
1683	 45.61	0	2064588..2065328	+	246	110668659	livF	HQ2758A	-	ABC-type branched-chain amino acid transport systems, ATP-binding protein II
1684	 40.58	-2	2065444..2065581	+	45	110668660	-	HQ2759A	-	C2H2 zinc finger DNA-binding protein
1685	 47.71	0	2065735..2066193	-	152	110668661	-	HQ2760A	-	hypothetical protein
1686	 49.40	0	2067018..2067185	-	55	110668662	-	HQ2761A	-	hypothetical protein
1687	 52.83	+1	2067252..2068169	+	305	110668663	aroK	HQ2762A	-	shikimate kinase
1688	 44.80	-1	2068249..2068623	+	124	110668664	pheA	HQ2763A	-	chorismate mutase
1689	 50.20	0	2069406..2070425	-	339	110668665	truB	HQ2764A	-	H/ACA RNA-protein complex component Cbf5p
1690	 48.53	0	2070440..2071018	-	192	110668666	cmk	HQ2765A	-	cytidylate kinase
1691	 46.28	0	2071580..2072506	-	308	110668667	-	HQ2766A	-	hypothetical protein
1692	 48.28	0	2073328..2073996	-	222	110668668	adk	HQ2767A	-	adenylate kinase
1693	 48.12	0	2074147..2074545	+	132	110668669	-	HQ2768A	-	hypothetical protein
1694	 48.37	0	2074775..2075725	+	316	110668670	ephA	HQ2769A	-	epoxide hydrolase-related protein
1695	 52.17	0	2077049..2077186	-	45	110668671	-	HQ2770A	-	hypothetical protein
1696	 48.85	0	2077362..2078102	-	246	110668672	-	HQ2771A	-	3-oxoacyl-[acyl-carrier-protein] reductase (3-ketoacyl-acyl carrier protein reductase)
1697	 47.18	0	2078252..2078836	-	194	110668673	idiA	HQ2772A	-	isopentenyl-diphosphate delta-isomerase
1698	 43.90	-1	2079097..2079522	-	141	110668674	lrp	HQ2773A	-	transcription regulator
1699	 49.41	0	2079620..2080720	+	366	110668675	carA	HQ2774A	-	carbamoyl phosphate synthase small subunit
1700	 50.94	0	2081121..2082188	-	355	110668676	-	HQ2775A	-	protein N-acetyltransferase
1701	 49.36	0	2082219..2083547	-	442	110668677	gatD	HQ2776A	-	glutamyl-tRNA(Gln) amidotransferase subunit D
1702	 47.19	0	2084285..2084818	+	177	110668678	-	HQ2778A	-	hypothetical protein
1703	 48.26	0	2084924..2085727	-	267	110668679	-	HQ2779A	-	transcription regulator
1704	 47.11	0	2085778..2086503	-	241	110668680	-	HQ2780A	-	hypothetical protein
1705	 47.99	0	2086829..2088343	+	504	110668681	gpmA	HQ2781A	-	phosphoglyceromutase
1706	 48.58	0	2088361..2089029	-	222	110668682	-	HQ2782A	-	hypothetical protein
1707	 48.07	0	2089098..2089538	+	146	110668683	-	HQ2783A	-	hypothetical protein
1708	 42.53	-1	2089533..2089880	-	115	110668684	-	HQ2784A	-	hypothetical protein
1709	 46.82	0	2091351..2092373	-	340	110668685	-	HQ2786A	-	hypothetical protein
1710	 48.53	0	2092366..2093352	-	328	110668686	sppA	HQ2787A	-	protease IV; endopeptidase IV; signal peptide peptidase
1711	 48.23	0	2093505..2094068	+	187	110668687	-	HQ2788A	-	phosphoglycolate phosphatase
1712	 50.22	0	2094285..2094734	+	149	110668688	-	HQ2789A	-	hypothetical protein
1713	 47.01	0	2094906..2095841	-	311	110668689	folD	HQ2790A	-	methylenetetrahydrofolate dehydrogenase; methenyltetrahydrofolate cyclohydrolase
1714	 49.52	0	2095993..2097240	-	415	110668690	glyA	HQ2791A	-	glycine hydroxymethyltransferase
1715	 45.45	0	2097630..2098454	+	274	110668691	-	HQ2792A	-	hypothetical protein
1716	 51.00	0	2098502..2100295	+	597	110668692	-	HQ2793A	-	hypothetical protein
1717	 47.82	0	2100441..2101586	-	381	110668693	-	HQ2794A	-	hypothetical protein
1718	 50.00	0	2101811..2102620	-	269	110668694	suhB	HQ2795A	-	inositol-1(or 4)-monophosphatase/ fructose-1,6-bisphosphatase, type
1719	 46.71	0	2102607..2103047	-	146	110668695	uspA	HQ2796A	-	stress response protein
1720	 49.72	0	2103188..2103547	+	119	110668696	-	HQ2797A	-	hypothetical protein
1721	 48.14	0	2103801..2104739	+	312	110668697	mch	HQ2798A	-	N(5),N(10)-methenyltetrahydromethanopterin cyclohydrolase
1722	 48.48	0	2104900..2106246	-	448	110668698	caaX	HQ2799A	-	CAAX prenyl proteinase / zinc metalloproteinase
1723	 51.20	0	2106602..2108230	-	542	110668699	-	HQ2800A	-	translation elongation factor aEF-1 alpha subunit-like protein
1724	 50.87	0	2108901..2109419	-	172	110668700	dnaJ	HQ2801A	-	chaperone protein dnaJ
1725	 51.98	0	2109764..2111002	+	412	110668701	-	HQ2802A	-	hypothetical protein
1726	 52.86	+1	2111152..2111361	+	69	110668702	-	HQ2803A	-	hypothetical protein
1727	 42.22	-1	2112830..2113009	+	59	110668703	-	HQ2804A	-	hypothetical protein
1728	 45.34	0	2113045..2113752	-	235	110668704	livF	HQ2805A	-	ABC-type branched-chain amino acid transport systems, ATP-binding protein I
1729	 47.09	0	2113754..2114785	-	343	110668705	livG	HQ2806A	-	ABC-type branched-chain amino acid transport systems, ATP-binding protein II
1730	 47.57	0	2114782..2116656	-	624	110668706	livM	HQ2807A	-	ABC-type branched-chain amino acid transport system, permease protein II
1731	 47.53	0	2116659..2118116	-	485	110668707	livH	HQ2808A	-	ABC-type branched-chain amino acid transport system, permease protein I
1732	 48.30	0	2118220..2119575	+	451	110668708	livJ	HQ2809A	-	ABC-type branched-chain amino acid transport systems, substrate-binding protein
1733	 48.34	0	2119942..2121240	+	432	110668709	-	HQ2810A	-	hypothetical protein
1734	 41.96	-1	2121378..2121632	-	84	110668710	-	HQ2811A	-	hypothetical protein
1735	 44.98	0	2121737..2122045	-	102	110668711	-	HQ2812A	-	hypothetical protein
1736	 45.48	0	2122263..2122682	+	139	110668712	-	HQ2813A	-	hypothetical protein
1737	 43.10	-1	2122710..2123723	-	337	110668713	-	HQ2814A	-	signal-transducing histidine kinase
48.79	MEAN

3.84	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.