IslandPathversion 1.0

IslandPath Analysis: Haloquadratum walsbyi DSM 16790



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 48.79 STD DEV: 3.84
Haloquadratum walsbyi DSM 16790, complete genome - 1..3132494
2610 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1536	 49.84	0	1878245..1879504	+	419	110668512	phnM	HQ2605A	-	phosphonate metabolism protein PhnM
1537	 46.02	0	1879501..1880304	+	267	110668513	-	HQ2606A	-	hypothetical protein
1538	 51.63	0	1880624..1881022	-	132	110668514	arsR	HQ2607A	-	arsenical resistance operon repressor (transcription regulator)
1539	 48.21	0	1881336..1881671	+	111	110668515	arsD	HQ2608A	-	arsenical resistance operon trans-acting repressor ArsD (transcriptional regulator)
1540	 51.19	0	1881668..1883599	+	643	110668516	arsA	HQ2609A	-	arsenite efflux ATPase
1541	 45.26	0	1883596..1883964	+	122	110668517	-	HQ2610A	-	hypothetical protein
1542	 51.42	0	1884754..1885704	-	316	110668518	-	HQ2611A	-	hypothetical protein
1543	 50.13	0	1885701..1886081	-	126	110668519	arsR	HQ2612A	-	ArsR family transcriptional regulator
1544	 56.00	+1	1886558..1887082	+	174	110668520	-	HQ2613A	-	transposase (ISHnew91)
1545	 48.64	0	1887673..1888776	-	367	110668521	xerC	HQ2614A	-	tyrosine recombinase xerC
1546	 49.38	0	1888776..1889261	-	161	110668522	-	HQ2615A	-	hypothetical protein
1547	 54.97	+1	1892317..1893060	-	247	110668523	-	HQ2617A	-	hypothetical protein
1548	 53.73	+1	1893569..1894867	+	432	110668524	-	HQ2618A	-	hypothetical protein
1549	 46.96	0	1895085..1895561	+	158	110668525	lrp	HQ2619A	-	transcription regulator
1550	 49.46	0	1895661..1896677	-	338	110668526	guaD	HQ2620A	-	nucleoside deaminase (cytosine deaminase, guanine deaminase)
1551	 45.68	0	1897634..1899220	+	528	110668527	nuoL	HQ2621A	-	homolog to NADH dehydrogenase, subunit L (ubiquinone)
1552	 46.82	0	1899210..1902005	+	931	110668528	-	HQ2622A	-	hypothetical protein
1553	 48.66	0	1902202..1902945	-	247	110668529	-	HQ2623A	-	hypothetical protein
1554	 47.07	0	1903162..1903947	+	261	110668530	-	HQ2624A	-	hypothetical protein
1555	 45.30	0	1904000..1904701	+	233	110668531	-	HQ2625A	-	glycosyltransferase-like protein
1556	 44.44	-1	1904694..1904891	-	65	110668532	-	HQ2626A	-	hypothetical protein
1557	 48.17	0	1904993..1905895	+	300	110668533	-	HQ2627A	-	hypothetical protein
1558	 49.36	0	1905956..1907128	+	390	110668534	gbp	HQ2628A	-	translation-associated GTPase
1559	 49.47	0	1907177..1908298	-	373	110668535	aspC	HQ2629A	-	PLP-dependent aminotransferase ( aspartate aminotransferase )
1560	 49.45	0	1908602..1909687	+	361	110668536	ssuA	HQ2630A	-	ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic component; putative aliphatic sulfonate binding protein
1561	 47.13	0	1909684..1910589	+	301	110668537	ssuC	HQ2631A	-	sulfonate ABC transporter permease
1562	 49.10	0	1910673..1911395	+	240	110668538	ssuB	HQ2632A	-	ABC-type nitrate/sulfonate/bicarbonate transport system ATPase component; sulfonate ABC transporter ATP binding protein
1563	 43.23	-1	1911476..1911667	-	63	110668539	-	HQ2633A	-	hypothetical protein
1564	 44.97	0	1911794..1913116	+	440	110668540	rad25	HQ2634A	-	DNA repair protein Rad25
1565	 41.62	-1	1913123..1914631	+	502	110668541	-	HQ2635A	-	hypothetical protein
1566	 48.47	0	1914787..1915308	-	173	110668542	-	HQ2636A	-	hypothetical protein
1567	 46.65	0	1915305..1916243	-	312	110668543	sun	HQ2637A	-	tRNA and rRNA cytosine-C5-methylases
1568	 47.66	0	1916403..1917149	+	248	110668544	-	HQ2638A	-	hypothetical protein
1569	 44.69	-1	1917250..1918059	+	269	110668545	grpE	HQ2639A	-	dnaJ/dnaK ATPase stimulator grpE
1570	 50.36	0	1918232..1920157	+	641	110668546	dnaK	HQ2640A	-	dnaK-type molecular chaperone hsp70
1571	 50.52	0	1920782..1921945	+	387	110668547	dnaJ	HQ2641A	-	chaperone protein DnaJ
1572	 46.99	0	1922078..1922875	+	265	110668548	-	HQ2642A	-	hypothetical protein
1573	 46.83	0	1923027..1923626	+	199	110668549	-	HQ2643A	-	homolog to acetyltransferases
1574	 42.90	-1	1923997..1924362	-	121	110668550	-	HQ2644A	-	hypothetical protein
1575	 47.46	0	1924467..1924919	-	150	110668551	-	HQ2645A	-	hypothetical protein
1576	 48.20	0	1925680..1926096	+	138	110668552	cdd	HQ2646A	-	cytidine deaminase
1577	 48.00	0	1926380..1927204	+	274	110668553	udp	HQ2647A	-	uridine phosphorylase
1578	 48.29	0	1927412..1928608	+	398	110668554	ndh	HQ2648A	-	NADH dehydrogenase
1579	 44.38	-1	1928907..1929440	-	177	110668555	-	HQ2649A	-	transcriptional regulator
1580	 45.42	0	1929522..1930439	+	305	110668556	galE	HQ2650A	-	nucleoside-diphosphate-sugar epimerase ( UDP-glucose 4-epimerase)
1581	 47.61	0	1930621..1933191	-	856	110668557	gyrA	HQ2651A	-	DNA gyrase / DNA topoisomerase II subunit A
1582	 46.31	0	1933191..1935749	-	852	110668558	gyrB	HQ2652A	-	DNA gyrase / DNA topoisomerase II subunit B
1583	 48.33	0	1935925..1939839	+	1304	110668559	top6B	HQ2653A	-	DNA topoisomerase VI subunit B
1584	 45.75	0	1940145..1941239	+	364	110668560	top6A	HQ2654A	-	DNA topoisomerase VI subunit A
1585	 53.42	+1	1941481..1942152	+	223	110668561	thiE	HQ2655A	-	thiamine-phosphate pyrophosphorylase
1586	 51.56	0	1942152..1943018	+	288	110668562	thiM	HQ2656A	-	hydroxyethylthiazole kinase
1587	 48.66	0	1943205..1944026	+	273	110668563	thiD	HQ2657A	-	phosphomethylpyrimidine kinase
1588	 46.58	0	1944138..1944854	-	238	110668564	-	HQ2658A	-	hypothetical protein
1589	 47.23	0	1945051..1946907	-	618	110668565	ligB	HQ2659A	-	DNA ligase (ATP)
1590	 49.90	0	1947109..1948641	+	510	110668566	-	HQ2660A	-	hypothetical protein
1591	 47.54	0	1948976..1949707	-	243	110668567	psmB	HQ2661A	-	proteasome beta subunit
1592	 48.33	0	1949962..1950201	-	79	110668568	-	HQ2662A	-	hypothetical protein
1593	 48.18	0	1950495..1950851	+	118	110668569	-	HQ2663A	-	hypothetical protein
1594	 50.37	0	1951055..1951600	+	181	110668570	-	HQ2664A	-	transcriptional regulator
1595	 48.40	0	1951759..1952787	-	342	110668571	purM	HQ2665A	-	phosphoribosylaminoimidazole synthetase
1596	 41.37	-1	1953139..1953387	+	82	110668572	-	HQ2666A	-	hypothetical protein
1597	 48.59	0	1953537..1954211	-	224	110668573	-	HQ2667A	-	membrane metallopeptidase
1598	 50.39	0	1954454..1956118	-	554	110668574	traB	HQ2668A	-	plasmid transfer protein
1599	 49.53	0	1956410..1956946	+	178	110668575	-	HQ2669A	-	hypothetical protein
1600	 46.58	0	1957078..1957545	+	155	110668576	-	HQ2670A	-	hypothetical protein
1601	 49.59	0	1957785..1960964	+	1059	110668577	ileS	HQ2671A	-	isoleucyl-tRNA synthetase
1602	 50.79	0	1961159..1962166	+	335	110668578	dhaK1	HQ2672A	-	dihydroxyacetone kinase
1603	 49.33	0	1962159..1962902	+	247	110668579	dhaK2	HQ2673A	-	dihydroxyacetone kinase
1604	 50.44	0	1962902..1963357	+	151	110668580	dhaM	HQ2674A	-	phosphoenolpyruvate-protein phosphoryltransferase
1605	 49.44	0	1963756..1965009	+	417	110668581	gpdA	HQ2675A	-	glycerol-3-phosphate dehydrogenase, subunit A
1606	 51.42	0	1965172..1965873	+	233	110668582	-	HQ2676A	-	hypothetical protein
1607	 48.61	0	1965988..1966203	-	71	110668583	-	HQ2677A	-	hypothetical protein
1608	 48.54	0	1966494..1967144	+	216	110668584	-	HQ2678A	-	S-adenosylmethionine-dependent methyltransferase-like protein
1609	 52.13	0	1967756..1968739	-	327	110668585	-	HQ2679A	-	hypothetical protein
1610	 50.30	0	1968893..1970218	-	441	110668586	ugd	HQ2680A	-	UDP-glucose 6-dehydrogenase
1611	 49.17	0	1970496..1973804	-	1102	110668587	stt3	HQ2681A	-	transmembrane oligosaccharyl transferase
1612	 55.33	+1	1974242..1974991	+	249	110668588	graD	HQ2682A	-	sugar nucleotidyltransferase II ( glucose-1-phosphate thymidylyltransferase)
1613	 54.71	+1	1974992..1975978	-	328	110668589	galE	HQ2683A	-	nucleoside-diphosphate-sugar epimerase 1 ( UDP-glucose 4-epimerase)
1614	 47.18	0	1977742..1978557	+	271	110668590	-	HQ2685A	-	hypothetical protein
1615	 49.66	0	1978601..1979641	-	346	110668591	-	HQ2686A	-	hexosyltransferase; glycosyltransferase
1616	 46.34	0	1979745..1981328	+	527	110668592	-	HQ2687A	-	polysaccharide biosynthesis transporter
1617	 51.25	0	1981359..1982357	+	332	110668593	-	HQ2688A	-	hypothetical protein
1618	 51.52	0	1984182..1985633	+	483	110668594	aslA	HQ2690A	-	arylsulfatase
1619	 47.92	0	1985738..1986889	-	383	110668595	-	HQ2691A	-	hexosyltransferase; glycosyltransferase
1620	 51.95	0	1987643..1988641	-	332	110668596	-	HQ2692A	-	glycosyltransferase
1621	 49.50	0	1989499..1990698	+	399	110668597	gtl	HQ2694A	-	glycosyltransferase ( dolichyl-phosphate beta-D-mannosyltransferase)
1622	 50.15	0	1990887..1991213	-	108	110668598	-	HQ2695A	-	hypothetical protein
1623	 47.42	0	1991662..1991874	+	70	110668599	-	HQ2696A	-	hypothetical protein
1624	 50.77	0	1992174..1992563	-	129	110668600	-	HQ2697A	-	hypothetical protein
1625	 52.36	0	1992782..1993480	-	232	110668601	-	HQ2698A	-	hypothetical protein
1626	 49.49	0	1993740..1994036	-	98	110668602	-	HQ2699A	-	hypothetical protein
1627	 48.71	0	1995698..1996354	+	218	110668603	-	HQ2701A	-	hypothetical protein
1628	 51.17	0	1996400..1998199	+	599	110668604	ilvB	HQ2702A	-	acetolactate synthase large subunit
1629	 49.74	0	1998196..1998969	+	257	110668605	ilvN	HQ2703A	-	acetolactate synthase, small subunit
1630	 49.51	0	1998966..2000084	+	372	110668606	ilvC	HQ2704A	-	ketol-acid reductoisomerase
1631	 48.26	0	2000103..2001569	+	488	110668607	leuC	HQ2705A	-	isopropylmalate isomerase large subunit
1632	 47.13	0	2001569..2002177	+	202	110668608	leuD	HQ2706A	-	3-isopropylmalate dehydratase small subunit
1633	 49.25	0	2002181..2003185	+	334	110668609	leuB	HQ2707A	-	3-isopropylmalate dehydrogenase
1634	 54.44	+1	2003517..2003786	+	89	110668610	hpr	HQ2708A	-	phosphocarrier protein Hpr
1635	 51.63	0	2003791..2005512	+	573	110668611	ptsI	HQ2709A	-	phosphoenolpyruvate-protein phosphotransferase (phosphotransferase system, enzyme I)
48.79	MEAN

3.84	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.