IslandPathversion 1.0

IslandPath Analysis: Haloquadratum walsbyi DSM 16790



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 48.79 STD DEV: 3.84
Haloquadratum walsbyi DSM 16790, complete genome - 1..3132494
2610 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1484	 47.11	0	1813451..1815229	+	592	110668460	lctP	HQ2551A	-	L-lactate permease
1485	 49.91	0	1816101..1817162	+	353	110668461	-	HQ2552A	-	hypothetical protein
1486	 42.76	-1	1817159..1817773	+	204	110668462	-	HQ2553A	-	hypothetical protein
1487	 42.19	-1	1818137..1818565	+	142	110668463	-	HQ2554A	-	hypothetical protein
1488	 48.95	0	1818692..1819120	+	142	110668464	-	HQ2555A	-	hypothetical protein
1489	 50.40	0	1820617..1821747	-	376	110668465	cysK	HQ2556A	-	cysteine synthase
1490	 43.85	-1	1823206..1823595	+	129	110668466	trxA	HQ2557A	-	thioredoxin
1491	 49.15	0	1823706..1823882	+	58	110668467	-	HQ2558A	-	hypothetical protein
1492	 48.42	0	1824108..1826414	-	768	110668468	-	HQ2559A	-	thioredoxin domain-containing protein
1493	 49.27	0	1826647..1827951	+	434	110668469	purD	HQ2560A	-	phosphoribosylamine--glycine ligase
1494	 46.82	0	1828170..1828688	+	172	110668470	-	HQ2561A	-	acetyltransferase-like protein
1495	 44.91	-1	1829767..1830561	-	264	110668471	msc	HQ2562A	-	mechanosensitive ion channel
1496	 43.26	-1	1830573..1831388	-	271	110668472	-	HQ2563A	-	hypothetical protein
1497	 48.54	0	1832060..1832368	+	102	110668473	tfbA	HQ2564A	-	transcription initiation factor TFB
1498	 50.29	0	1832927..1833439	-	170	110668474	ppaT	HQ2565A	-	phosphopantetheine adenylyltransferase
1499	 49.36	0	1833619..1834710	-	363	110668475	gcs2	HQ2566A	-	carboxylate-amine ligase
1500	 47.99	0	1834976..1835623	-	215	110668476	flpA	HQ2567A	-	fibrillarin
1501	 49.18	0	1835620..1836477	-	285	110668477	nop56	HQ2568A	-	pre-rRNA-processing protein nop56
1502	 47.65	0	1836887..1837375	+	162	110668478	-	HQ2569A	-	hypothetical protein
1503	 49.57	0	1839108..1840148	+	346	110668479	tfbA	HQ2571A	-	transcription initiation factor TFB
1504	 42.74	-1	1840290..1840406	-	38	110668480	-	HQ2572A	-	hypothetical protein
1505	 49.02	0	1840827..1841081	-	84	110668481	tif2b	HQ2573A	-	translation initiation factor aIF-2 beta subunit
1506	 49.37	0	1841291..1841527	+	78	110668482	-	HQ2574A	-	hypothetical protein
1507	 46.75	0	1842597..1843073	-	158	110668483	-	HQ2576A	-	hypothetical protein
1508	 48.13	0	1843103..1844116	-	337	110668484	ogg	HQ2577A	-	DNA N-glycosylase / DNA lyase
1509	 47.13	0	1844406..1846028	-	540	110668485	malQ	HQ2578A	-	4-alpha-glucanotransferase
1510	 45.36	0	1846532..1848460	+	642	110668486	thrS	HQ2579A	-	threonine--tRNA ligase
1511	 47.98	0	1848565..1850250	-	561	110668487	nadE	HQ2580A	-	NAD(+) synthase (glutamine-hydrolyzing)
1512	 47.49	0	1850529..1851983	+	484	110668488	-	HQ2581A	-	NAD-binding protein ( Kef-type transporter subunit)
1513	 45.21	0	1852285..1852587	-	100	110668489	-	HQ2582A	-	hypothetical protein
1514	 50.21	0	1852862..1853335	-	157	110668490	-	HQ2583A	-	hypothetical protein
1515	 44.61	-1	1854059..1855264	-	401	110668491	metK	HQ2584A	-	S-adenosylmethionine synthetase
1516	 46.01	0	1855346..1855921	-	191	110668492	cyaB	HQ2585A	-	adenylate cyclase
1517	 49.10	0	1856221..1857273	+	350	110668493	mtfK2	HQ2586A	-	FKBP-type peptidylprolyl isomerase 2
1518	 49.27	0	1858011..1858625	-	204	110668494	minD	HQ2587A	-	cell division inhibitor MinD-like (ATPase involved in chromosome partitioning)
1519	 44.44	-1	1858773..1859150	-	125	110668495	-	HQ2588A	-	hypothetical protein
1520	 45.68	0	1859364..1860902	+	512	110668496	-	HQ2589A	-	hypothetical protein
1521	 47.55	0	1861634..1862674	+	346	110668497	dph2	HQ2590A	-	diphthamide synthase subunit DPH2
1522	 45.49	0	1862931..1863794	+	287	110668498	-	HQ2591A	-	hypothetical protein
1523	 45.79	0	1864631..1865569	+	312	110668499	-	HQ2592A	-	hypothetical protein
1524	 45.72	0	1866704..1867720	-	338	110668500	phoU	HQ2593A	-	phosphate uptake regulator / ABC transport system regulatory protein
1525	 46.44	0	1868023..1869060	+	345	110668501	-	HQ2594A	-	phosphate transport system regulator related protein
1526	 49.84	0	1869242..1869883	-	213	110668502	pat	HQ2595A	-	acetyltransferase protein
1527	 45.54	0	1869890..1870897	-	335	110668503	phnE	HQ2596A	-	ABC-type phosphate/phosphonate transport system,permease protein
1528	 45.39	0	1870894..1871739	-	281	110668504	phnC	HQ2597A	-	ABC-type phosphate/phosphonate transport system,ATPase protein
1529	 47.38	0	1871784..1872815	-	343	110668505	phnD	HQ2598A	-	ABC-type phosphate/phosphonate transport system,substrate-binding protein
1530	 45.56	0	1873085..1873534	+	149	110668506	phnG	HQ2599A	-	phosphonate metabolism protein PhnG
1531	 48.15	0	1873531..1874205	+	224	110668507	phnH	HQ2600A	-	phosphonate metabolism protein PhnH
1532	 50.00	0	1874205..1875356	+	383	110668508	phnI	HQ2601A	-	phosphonate metabolism protein PhnI
1533	 47.54	0	1875349..1876467	+	372	110668509	phnJ	HQ2602A	-	phosphonate metabolism protein PhnJ
1534	 47.07	0	1876464..1877300	+	278	110668510	phnK	HQ2603A	-	phosphonate ABC transporter ATP-binding protein
1535	 47.30	0	1877304..1878248	+	314	110668511	phnL	HQ2604A	-	phosphonate ABC transporter ATP-binding protein
1536	 49.84	0	1878245..1879504	+	419	110668512	phnM	HQ2605A	-	phosphonate metabolism protein PhnM
1537	 46.02	0	1879501..1880304	+	267	110668513	-	HQ2606A	-	hypothetical protein
1538	 51.63	0	1880624..1881022	-	132	110668514	arsR	HQ2607A	-	arsenical resistance operon repressor (transcription regulator)
1539	 48.21	0	1881336..1881671	+	111	110668515	arsD	HQ2608A	-	arsenical resistance operon trans-acting repressor ArsD (transcriptional regulator)
1540	 51.19	0	1881668..1883599	+	643	110668516	arsA	HQ2609A	-	arsenite efflux ATPase
1541	 45.26	0	1883596..1883964	+	122	110668517	-	HQ2610A	-	hypothetical protein
1542	 51.42	0	1884754..1885704	-	316	110668518	-	HQ2611A	-	hypothetical protein
1543	 50.13	0	1885701..1886081	-	126	110668519	arsR	HQ2612A	-	ArsR family transcriptional regulator
1544	 56.00	+1	1886558..1887082	+	174	110668520	-	HQ2613A	-	transposase (ISHnew91)
1545	 48.64	0	1887673..1888776	-	367	110668521	xerC	HQ2614A	-	tyrosine recombinase xerC
1546	 49.38	0	1888776..1889261	-	161	110668522	-	HQ2615A	-	hypothetical protein
1547	 54.97	+1	1892317..1893060	-	247	110668523	-	HQ2617A	-	hypothetical protein
1548	 53.73	+1	1893569..1894867	+	432	110668524	-	HQ2618A	-	hypothetical protein
1549	 46.96	0	1895085..1895561	+	158	110668525	lrp	HQ2619A	-	transcription regulator
1550	 49.46	0	1895661..1896677	-	338	110668526	guaD	HQ2620A	-	nucleoside deaminase (cytosine deaminase, guanine deaminase)
1551	 45.68	0	1897634..1899220	+	528	110668527	nuoL	HQ2621A	-	homolog to NADH dehydrogenase, subunit L (ubiquinone)
1552	 46.82	0	1899210..1902005	+	931	110668528	-	HQ2622A	-	hypothetical protein
1553	 48.66	0	1902202..1902945	-	247	110668529	-	HQ2623A	-	hypothetical protein
1554	 47.07	0	1903162..1903947	+	261	110668530	-	HQ2624A	-	hypothetical protein
1555	 45.30	0	1904000..1904701	+	233	110668531	-	HQ2625A	-	glycosyltransferase-like protein
1556	 44.44	-1	1904694..1904891	-	65	110668532	-	HQ2626A	-	hypothetical protein
1557	 48.17	0	1904993..1905895	+	300	110668533	-	HQ2627A	-	hypothetical protein
1558	 49.36	0	1905956..1907128	+	390	110668534	gbp	HQ2628A	-	translation-associated GTPase
1559	 49.47	0	1907177..1908298	-	373	110668535	aspC	HQ2629A	-	PLP-dependent aminotransferase ( aspartate aminotransferase )
1560	 49.45	0	1908602..1909687	+	361	110668536	ssuA	HQ2630A	-	ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic component; putative aliphatic sulfonate binding protein
1561	 47.13	0	1909684..1910589	+	301	110668537	ssuC	HQ2631A	-	sulfonate ABC transporter permease
1562	 49.10	0	1910673..1911395	+	240	110668538	ssuB	HQ2632A	-	ABC-type nitrate/sulfonate/bicarbonate transport system ATPase component; sulfonate ABC transporter ATP binding protein
1563	 43.23	-1	1911476..1911667	-	63	110668539	-	HQ2633A	-	hypothetical protein
1564	 44.97	0	1911794..1913116	+	440	110668540	rad25	HQ2634A	-	DNA repair protein Rad25
1565	 41.62	-1	1913123..1914631	+	502	110668541	-	HQ2635A	-	hypothetical protein
1566	 48.47	0	1914787..1915308	-	173	110668542	-	HQ2636A	-	hypothetical protein
1567	 46.65	0	1915305..1916243	-	312	110668543	sun	HQ2637A	-	tRNA and rRNA cytosine-C5-methylases
1568	 47.66	0	1916403..1917149	+	248	110668544	-	HQ2638A	-	hypothetical protein
1569	 44.69	-1	1917250..1918059	+	269	110668545	grpE	HQ2639A	-	dnaJ/dnaK ATPase stimulator grpE
1570	 50.36	0	1918232..1920157	+	641	110668546	dnaK	HQ2640A	-	dnaK-type molecular chaperone hsp70
1571	 50.52	0	1920782..1921945	+	387	110668547	dnaJ	HQ2641A	-	chaperone protein DnaJ
1572	 46.99	0	1922078..1922875	+	265	110668548	-	HQ2642A	-	hypothetical protein
1573	 46.83	0	1923027..1923626	+	199	110668549	-	HQ2643A	-	homolog to acetyltransferases
1574	 42.90	-1	1923997..1924362	-	121	110668550	-	HQ2644A	-	hypothetical protein
1575	 47.46	0	1924467..1924919	-	150	110668551	-	HQ2645A	-	hypothetical protein
1576	 48.20	0	1925680..1926096	+	138	110668552	cdd	HQ2646A	-	cytidine deaminase
1577	 48.00	0	1926380..1927204	+	274	110668553	udp	HQ2647A	-	uridine phosphorylase
1578	 48.29	0	1927412..1928608	+	398	110668554	ndh	HQ2648A	-	NADH dehydrogenase
1579	 44.38	-1	1928907..1929440	-	177	110668555	-	HQ2649A	-	transcriptional regulator
1580	 45.42	0	1929522..1930439	+	305	110668556	galE	HQ2650A	-	nucleoside-diphosphate-sugar epimerase ( UDP-glucose 4-epimerase)
1581	 47.61	0	1930621..1933191	-	856	110668557	gyrA	HQ2651A	-	DNA gyrase / DNA topoisomerase II subunit A
1582	 46.31	0	1933191..1935749	-	852	110668558	gyrB	HQ2652A	-	DNA gyrase / DNA topoisomerase II subunit B
1583	 48.33	0	1935925..1939839	+	1304	110668559	top6B	HQ2653A	-	DNA topoisomerase VI subunit B
48.79	MEAN

3.84	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.