IslandPathversion 1.0

IslandPath Analysis: Haloquadratum walsbyi DSM 16790



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 48.79 STD DEV: 3.84
Haloquadratum walsbyi DSM 16790, complete genome - 1..3132494
2610 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1451	 38.02	-2	1760453..1760857	+	134	110668427	-	HQ2518A	-	hypothetical protein
1452	 52.34	0	1761085..1761405	-	106	110668428	-	HQ2519A	-	TP rich cell surface protein viral Tpx
1453	 42.51	-1	1761679..1762713	-	344	110668429	-	HQ2520A	-	hypothetical protein
1454	 46.85	0	1763175..1764491	+	438	110668430	-	HQ2521A	-	major facilitator superfamily transporter quinolone resistance protein
1455	 47.55	0	1764769..1765401	+	210	110668431	-	HQ2522A	-	protein N-acetyltransferase-like protein
1456	 43.16	-1	1765487..1766188	+	233	110668432	pssA	HQ2523A	-	CDP-diacylglycerol--serine O-phosphatidyltransferase (phosphatidylserine synthase)
1457	 43.79	-1	1766380..1767144	+	254	110668433	-	HQ2524A	-	hypothetical protein
1458	 45.64	0	1767258..1767647	+	129	110668434	-	HQ2525A	-	hypothetical protein
1459	 44.96	0	1767644..1768417	+	257	110668435	-	HQ2526A	-	hypothetical protein
1460	 46.35	0	1775266..1775826	+	186	110668436	tbpE	HQ2527A	-	transcription factor
1461	 47.81	0	1776036..1778114	+	692	110668437	rhl	HQ2528A	-	DNA repair helicase
1462	 51.62	0	1778375..1778899	-	174	110668438	-	HQ2529A	-	hypothetical protein
1463	 47.11	0	1780738..1781100	-	120	110668439	-	HQ2530A	-	hypothetical protein
1464	 49.70	0	1782244..1782915	-	223	110668440	btpA	HQ2531A	-	photosystem I biogenesis protein
1465	 54.17	+1	1783035..1783346	-	103	110668441	-	HQ2532A	-	hypothetical protein
1466	 47.08	0	1783667..1784299	-	210	110668442	lysE	HQ2533A	-	LysE family transporter
1467	 47.02	0	1784609..1785748	+	379	110668443	-	HQ2534A	-	hypothetical protein
1468	 45.49	0	1785849..1787189	-	446	110668444	-	HQ2535A	-	hypothetical protein
1469	 51.29	0	1787751..1788953	+	400	110668445	-	HQ2536A	-	IS1341-type transposase
1470	 44.80	-1	1789084..1789554	-	156	110668446	ferA_5	HQ2537A	-	ferredoxin
1471	 45.62	0	1790353..1790832	-	159	110668447	-	HQ2538A	-	hypothetical protein
1472	 49.67	0	1790912..1795459	-	1515	110668448	sga1	HQ2539A	-	glucoamylase
1473	 48.06	0	1795553..1797691	+	712	110668449	amyA	HQ2540A	-	glucan 1,4-alpha-maltohydrolase
1474	 45.74	0	1798375..1798632	+	85	110668450	-	HQ2541A	-	transposase (fragment)
1475	 47.49	0	1798795..1801161	-	788	110668451	-	HQ2542A	-	membrane protein
1476	 48.21	0	1801197..1802507	-	436	110668452	sfuC	HQ2543A	-	ABC-type spermidine/putrescine/iron transport system, ATP-binding protein
1477	 48.65	0	1802545..1804170	-	541	110668453	sfuB	HQ2544A	-	ABC-type iron(III) transport system, permease protein
1478	 47.84	0	1804268..1805473	-	401	110668454	sfuA	HQ2545A	-	ABC-type iron(III) transport system,substrate-binding protein
1479	 46.33	0	1805611..1806795	-	394	110668455	-	HQ2546A	-	hypothetical protein
1480	 47.28	0	1806944..1807366	+	140	110668456	-	HQ2547A	-	hypothetical protein
1481	 49.90	0	1807505..1808011	+	168	110668457	-	HQ2548A	-	endonuclease associated protein
1482	 54.18	+1	1808238..1809518	+	426	110668458	-	HQ2549A	-	IS1341-type transposase
1483	 47.48	0	1809992..1813102	-	1036	110668459	glcD	HQ2550A	-	oxidoreductase ( glycolate oxidase iron-sulfur subunit)
1484	 47.11	0	1813451..1815229	+	592	110668460	lctP	HQ2551A	-	L-lactate permease
1485	 49.91	0	1816101..1817162	+	353	110668461	-	HQ2552A	-	hypothetical protein
1486	 42.76	-1	1817159..1817773	+	204	110668462	-	HQ2553A	-	hypothetical protein
1487	 42.19	-1	1818137..1818565	+	142	110668463	-	HQ2554A	-	hypothetical protein
1488	 48.95	0	1818692..1819120	+	142	110668464	-	HQ2555A	-	hypothetical protein
1489	 50.40	0	1820617..1821747	-	376	110668465	cysK	HQ2556A	-	cysteine synthase
1490	 43.85	-1	1823206..1823595	+	129	110668466	trxA	HQ2557A	-	thioredoxin
1491	 49.15	0	1823706..1823882	+	58	110668467	-	HQ2558A	-	hypothetical protein
1492	 48.42	0	1824108..1826414	-	768	110668468	-	HQ2559A	-	thioredoxin domain-containing protein
1493	 49.27	0	1826647..1827951	+	434	110668469	purD	HQ2560A	-	phosphoribosylamine--glycine ligase
1494	 46.82	0	1828170..1828688	+	172	110668470	-	HQ2561A	-	acetyltransferase-like protein
1495	 44.91	-1	1829767..1830561	-	264	110668471	msc	HQ2562A	-	mechanosensitive ion channel
1496	 43.26	-1	1830573..1831388	-	271	110668472	-	HQ2563A	-	hypothetical protein
1497	 48.54	0	1832060..1832368	+	102	110668473	tfbA	HQ2564A	-	transcription initiation factor TFB
1498	 50.29	0	1832927..1833439	-	170	110668474	ppaT	HQ2565A	-	phosphopantetheine adenylyltransferase
1499	 49.36	0	1833619..1834710	-	363	110668475	gcs2	HQ2566A	-	carboxylate-amine ligase
1500	 47.99	0	1834976..1835623	-	215	110668476	flpA	HQ2567A	-	fibrillarin
1501	 49.18	0	1835620..1836477	-	285	110668477	nop56	HQ2568A	-	pre-rRNA-processing protein nop56
1502	 47.65	0	1836887..1837375	+	162	110668478	-	HQ2569A	-	hypothetical protein
1503	 49.57	0	1839108..1840148	+	346	110668479	tfbA	HQ2571A	-	transcription initiation factor TFB
1504	 42.74	-1	1840290..1840406	-	38	110668480	-	HQ2572A	-	hypothetical protein
1505	 49.02	0	1840827..1841081	-	84	110668481	tif2b	HQ2573A	-	translation initiation factor aIF-2 beta subunit
1506	 49.37	0	1841291..1841527	+	78	110668482	-	HQ2574A	-	hypothetical protein
1507	 46.75	0	1842597..1843073	-	158	110668483	-	HQ2576A	-	hypothetical protein
1508	 48.13	0	1843103..1844116	-	337	110668484	ogg	HQ2577A	-	DNA N-glycosylase / DNA lyase
1509	 47.13	0	1844406..1846028	-	540	110668485	malQ	HQ2578A	-	4-alpha-glucanotransferase
1510	 45.36	0	1846532..1848460	+	642	110668486	thrS	HQ2579A	-	threonine--tRNA ligase
1511	 47.98	0	1848565..1850250	-	561	110668487	nadE	HQ2580A	-	NAD(+) synthase (glutamine-hydrolyzing)
1512	 47.49	0	1850529..1851983	+	484	110668488	-	HQ2581A	-	NAD-binding protein ( Kef-type transporter subunit)
1513	 45.21	0	1852285..1852587	-	100	110668489	-	HQ2582A	-	hypothetical protein
1514	 50.21	0	1852862..1853335	-	157	110668490	-	HQ2583A	-	hypothetical protein
1515	 44.61	-1	1854059..1855264	-	401	110668491	metK	HQ2584A	-	S-adenosylmethionine synthetase
1516	 46.01	0	1855346..1855921	-	191	110668492	cyaB	HQ2585A	-	adenylate cyclase
1517	 49.10	0	1856221..1857273	+	350	110668493	mtfK2	HQ2586A	-	FKBP-type peptidylprolyl isomerase 2
1518	 49.27	0	1858011..1858625	-	204	110668494	minD	HQ2587A	-	cell division inhibitor MinD-like (ATPase involved in chromosome partitioning)
1519	 44.44	-1	1858773..1859150	-	125	110668495	-	HQ2588A	-	hypothetical protein
1520	 45.68	0	1859364..1860902	+	512	110668496	-	HQ2589A	-	hypothetical protein
1521	 47.55	0	1861634..1862674	+	346	110668497	dph2	HQ2590A	-	diphthamide synthase subunit DPH2
1522	 45.49	0	1862931..1863794	+	287	110668498	-	HQ2591A	-	hypothetical protein
1523	 45.79	0	1864631..1865569	+	312	110668499	-	HQ2592A	-	hypothetical protein
1524	 45.72	0	1866704..1867720	-	338	110668500	phoU	HQ2593A	-	phosphate uptake regulator / ABC transport system regulatory protein
1525	 46.44	0	1868023..1869060	+	345	110668501	-	HQ2594A	-	phosphate transport system regulator related protein
1526	 49.84	0	1869242..1869883	-	213	110668502	pat	HQ2595A	-	acetyltransferase protein
1527	 45.54	0	1869890..1870897	-	335	110668503	phnE	HQ2596A	-	ABC-type phosphate/phosphonate transport system,permease protein
1528	 45.39	0	1870894..1871739	-	281	110668504	phnC	HQ2597A	-	ABC-type phosphate/phosphonate transport system,ATPase protein
1529	 47.38	0	1871784..1872815	-	343	110668505	phnD	HQ2598A	-	ABC-type phosphate/phosphonate transport system,substrate-binding protein
1530	 45.56	0	1873085..1873534	+	149	110668506	phnG	HQ2599A	-	phosphonate metabolism protein PhnG
1531	 48.15	0	1873531..1874205	+	224	110668507	phnH	HQ2600A	-	phosphonate metabolism protein PhnH
1532	 50.00	0	1874205..1875356	+	383	110668508	phnI	HQ2601A	-	phosphonate metabolism protein PhnI
1533	 47.54	0	1875349..1876467	+	372	110668509	phnJ	HQ2602A	-	phosphonate metabolism protein PhnJ
1534	 47.07	0	1876464..1877300	+	278	110668510	phnK	HQ2603A	-	phosphonate ABC transporter ATP-binding protein
1535	 47.30	0	1877304..1878248	+	314	110668511	phnL	HQ2604A	-	phosphonate ABC transporter ATP-binding protein
1536	 49.84	0	1878245..1879504	+	419	110668512	phnM	HQ2605A	-	phosphonate metabolism protein PhnM
1537	 46.02	0	1879501..1880304	+	267	110668513	-	HQ2606A	-	hypothetical protein
1538	 51.63	0	1880624..1881022	-	132	110668514	arsR	HQ2607A	-	arsenical resistance operon repressor (transcription regulator)
1539	 48.21	0	1881336..1881671	+	111	110668515	arsD	HQ2608A	-	arsenical resistance operon trans-acting repressor ArsD (transcriptional regulator)
1540	 51.19	0	1881668..1883599	+	643	110668516	arsA	HQ2609A	-	arsenite efflux ATPase
1541	 45.26	0	1883596..1883964	+	122	110668517	-	HQ2610A	-	hypothetical protein
1542	 51.42	0	1884754..1885704	-	316	110668518	-	HQ2611A	-	hypothetical protein
1543	 50.13	0	1885701..1886081	-	126	110668519	arsR	HQ2612A	-	ArsR family transcriptional regulator
1544	 56.00	+1	1886558..1887082	+	174	110668520	-	HQ2613A	-	transposase (ISHnew91)
1545	 48.64	0	1887673..1888776	-	367	110668521	xerC	HQ2614A	-	tyrosine recombinase xerC
1546	 49.38	0	1888776..1889261	-	161	110668522	-	HQ2615A	-	hypothetical protein
1547	 54.97	+1	1892317..1893060	-	247	110668523	-	HQ2617A	-	hypothetical protein
1548	 53.73	+1	1893569..1894867	+	432	110668524	-	HQ2618A	-	hypothetical protein
1549	 46.96	0	1895085..1895561	+	158	110668525	lrp	HQ2619A	-	transcription regulator
1550	 49.46	0	1895661..1896677	-	338	110668526	guaD	HQ2620A	-	nucleoside deaminase (cytosine deaminase, guanine deaminase)
48.79	MEAN

3.84	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.