IslandPathversion 1.0

IslandPath Analysis: Haloquadratum walsbyi DSM 16790



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 48.79 STD DEV: 3.84
Haloquadratum walsbyi DSM 16790, complete genome - 1..3132494
2610 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1412	 49.09	0	1720301..1721239	-	312	110668388	dppC	HQ2475A	-	ABC-type dipeptide/oligopeptide/nickel transport systems, permease protein
1413	 45.69	0	1721392..1722435	-	347	110668389	dppB	HQ2476A	-	ABC-type dipeptide/oligopeptide/nickel transport systems, permease protein
1414	 47.86	0	1722578..1724305	-	575	110668390	dppA	HQ2477A	-	ABC-type dipeptide/oligopeptide/nickel transport system, substrate-binding protein
1415	 46.88	0	1724472..1727054	-	860	110668391	dppDF	HQ2478A	-	ABC-type dipeptide/oligopeptide/nickel transport systems, ATP-binding protein I & II
1416	 43.65	-1	1727252..1727881	+	209	110668392	-	HQ2479A	-	hypothetical protein
1417	 49.16	0	1728073..1728489	-	138	110668393	-	HQ2480A	-	hypothetical protein
1418	 47.44	0	1728652..1729665	+	337	110668394	mutY	HQ2481A	-	A/G-specific adenine glycosylase
1419	 44.67	-1	1730318..1730467	-	49	110668395	-	HQ2483A	-	IS200-type transposase (nonfunctional,N-terminal part)
1420	 48.15	0	1730527..1730661	+	44	110668396	-	HQ2484A	-	hypothetical protein
1421	 55.86	+1	1730658..1731980	+	440	110668397	-	HQ2485A	-	IS1341-type transposase
1422	 42.98	-1	1732347..1732460	+	37	110668398	-	HQ2486A	-	hypothetical protein
1423	 50.00	0	1733261..1733968	-	235	110668399	cinA	HQ2488A	-	CinA-like domain-containing protein
1424	 47.71	0	1734060..1734866	-	268	110668400	-	HQ2489A	-	hypothetical protein
1425	 45.60	0	1735000..1735920	-	306	110668401	-	HQ2490A	-	hypothetical protein
1426	 46.89	0	1735920..1736450	-	176	110668402	tfeA	HQ2491A	-	transcription initiation factor IIE alpha subunit-like protein
1427	 47.25	0	1736621..1737202	-	193	110668403	-	HQ2492A	-	tRNA 2'-O-methylase
1428	 44.01	-1	1737440..1738525	+	361	110668404	dadA	HQ2493A	-	glycine/D-amino acid oxidases (deaminating)
1429	 44.93	-1	1738612..1739637	+	341	110668405	galE	HQ2494A	-	nucleoside-diphosphate-sugar epimerase ( UDP-glucose 4-epimerase)
1430	 45.75	0	1740203..1741096	+	297	110668406	-	HQ2496A	-	hypothetical protein
1431	 57.34	+2	1741307..1741810	+	167	110668407	-	HQ2497A	-	glycine-rich protein
1432	 46.71	0	1742112..1743098	-	328	110668408	iunH	HQ2498A	-	inosine-uridine preferring nucleoside hydrolase
1433	 45.22	0	1743308..1744603	-	431	110668409	-	HQ2499A	-	hexosyltransferase
1434	 45.78	0	1744704..1745948	-	414	110668410	-	HQ2500A	-	hexosyltransferase 1
1435	 50.18	0	1746121..1746399	+	92	110668411	rnp4	HQ2501A	-	ribonuclease P protein component 4
1436	 48.41	0	1746491..1746742	+	83	110668412	-	HQ2502A	-	hypothetical protein
1437	 46.36	0	1746739..1747659	+	306	110668413	mscS	HQ2503A	-	mechanosensitive channel
1438	 43.96	-1	1747654..1748472	-	272	110668414	-	HQ2504A	-	hypothetical protein
1439	 46.95	0	1749569..1749847	+	92	110668415	tatA	HQ2505A	-	sec-independent protein translocase component TatA
1440	 46.88	0	1750546..1752051	+	501	110668416	norM	HQ2506A	-	sodium-driven multidrug efflux pump
1441	 47.47	0	1752273..1752767	+	164	110668417	-	HQ2507A	-	hypothetical protein
1442	 48.33	0	1752805..1753851	-	348	110668418	-	HQ2508A	-	LPS glycosyltransferase
1443	 47.68	0	1755475..1756164	+	229	110668419	ribG	HQ2510A	-	hypothetical protein
1444	 45.72	0	1756249..1756587	+	112	110668420	trxA	HQ2511A	-	thioredoxin
1445	 50.92	0	1757468..1757740	+	90	110668421	-	HQ2512A	-	hypothetical protein
1446	 54.26	+1	1757733..1758296	+	187	110668422	-	HQ2513A	-	hypothetical protein
1447	 53.21	+1	1758352..1758663	+	103	110668423	-	HQ2514A	-	hypothetical protein
1448	 59.00	+2	1758828..1759088	+	86	110668424	-	HQ2515A	-	IS1341-type transposase-like protein
1449	 59.15	+2	1759219..1759431	+	70	110668425	-	HQ2516A	-	hypothetical protein
1450	 47.52	0	1759535..1760260	+	241	110668426	-	HQ2517A	-	putative RNA-associated protein
1451	 38.02	-2	1760453..1760857	+	134	110668427	-	HQ2518A	-	hypothetical protein
1452	 52.34	0	1761085..1761405	-	106	110668428	-	HQ2519A	-	TP rich cell surface protein viral Tpx
1453	 42.51	-1	1761679..1762713	-	344	110668429	-	HQ2520A	-	hypothetical protein
1454	 46.85	0	1763175..1764491	+	438	110668430	-	HQ2521A	-	major facilitator superfamily transporter quinolone resistance protein
1455	 47.55	0	1764769..1765401	+	210	110668431	-	HQ2522A	-	protein N-acetyltransferase-like protein
1456	 43.16	-1	1765487..1766188	+	233	110668432	pssA	HQ2523A	-	CDP-diacylglycerol--serine O-phosphatidyltransferase (phosphatidylserine synthase)
1457	 43.79	-1	1766380..1767144	+	254	110668433	-	HQ2524A	-	hypothetical protein
1458	 45.64	0	1767258..1767647	+	129	110668434	-	HQ2525A	-	hypothetical protein
1459	 44.96	0	1767644..1768417	+	257	110668435	-	HQ2526A	-	hypothetical protein
1460	 46.35	0	1775266..1775826	+	186	110668436	tbpE	HQ2527A	-	transcription factor
1461	 47.81	0	1776036..1778114	+	692	110668437	rhl	HQ2528A	-	DNA repair helicase
1462	 51.62	0	1778375..1778899	-	174	110668438	-	HQ2529A	-	hypothetical protein
1463	 47.11	0	1780738..1781100	-	120	110668439	-	HQ2530A	-	hypothetical protein
1464	 49.70	0	1782244..1782915	-	223	110668440	btpA	HQ2531A	-	photosystem I biogenesis protein
1465	 54.17	+1	1783035..1783346	-	103	110668441	-	HQ2532A	-	hypothetical protein
1466	 47.08	0	1783667..1784299	-	210	110668442	lysE	HQ2533A	-	LysE family transporter
1467	 47.02	0	1784609..1785748	+	379	110668443	-	HQ2534A	-	hypothetical protein
1468	 45.49	0	1785849..1787189	-	446	110668444	-	HQ2535A	-	hypothetical protein
1469	 51.29	0	1787751..1788953	+	400	110668445	-	HQ2536A	-	IS1341-type transposase
1470	 44.80	-1	1789084..1789554	-	156	110668446	ferA_5	HQ2537A	-	ferredoxin
1471	 45.62	0	1790353..1790832	-	159	110668447	-	HQ2538A	-	hypothetical protein
1472	 49.67	0	1790912..1795459	-	1515	110668448	sga1	HQ2539A	-	glucoamylase
1473	 48.06	0	1795553..1797691	+	712	110668449	amyA	HQ2540A	-	glucan 1,4-alpha-maltohydrolase
1474	 45.74	0	1798375..1798632	+	85	110668450	-	HQ2541A	-	transposase (fragment)
1475	 47.49	0	1798795..1801161	-	788	110668451	-	HQ2542A	-	membrane protein
1476	 48.21	0	1801197..1802507	-	436	110668452	sfuC	HQ2543A	-	ABC-type spermidine/putrescine/iron transport system, ATP-binding protein
1477	 48.65	0	1802545..1804170	-	541	110668453	sfuB	HQ2544A	-	ABC-type iron(III) transport system, permease protein
1478	 47.84	0	1804268..1805473	-	401	110668454	sfuA	HQ2545A	-	ABC-type iron(III) transport system,substrate-binding protein
1479	 46.33	0	1805611..1806795	-	394	110668455	-	HQ2546A	-	hypothetical protein
1480	 47.28	0	1806944..1807366	+	140	110668456	-	HQ2547A	-	hypothetical protein
1481	 49.90	0	1807505..1808011	+	168	110668457	-	HQ2548A	-	endonuclease associated protein
1482	 54.18	+1	1808238..1809518	+	426	110668458	-	HQ2549A	-	IS1341-type transposase
1483	 47.48	0	1809992..1813102	-	1036	110668459	glcD	HQ2550A	-	oxidoreductase ( glycolate oxidase iron-sulfur subunit)
1484	 47.11	0	1813451..1815229	+	592	110668460	lctP	HQ2551A	-	L-lactate permease
1485	 49.91	0	1816101..1817162	+	353	110668461	-	HQ2552A	-	hypothetical protein
1486	 42.76	-1	1817159..1817773	+	204	110668462	-	HQ2553A	-	hypothetical protein
1487	 42.19	-1	1818137..1818565	+	142	110668463	-	HQ2554A	-	hypothetical protein
1488	 48.95	0	1818692..1819120	+	142	110668464	-	HQ2555A	-	hypothetical protein
1489	 50.40	0	1820617..1821747	-	376	110668465	cysK	HQ2556A	-	cysteine synthase
1490	 43.85	-1	1823206..1823595	+	129	110668466	trxA	HQ2557A	-	thioredoxin
1491	 49.15	0	1823706..1823882	+	58	110668467	-	HQ2558A	-	hypothetical protein
1492	 48.42	0	1824108..1826414	-	768	110668468	-	HQ2559A	-	thioredoxin domain-containing protein
1493	 49.27	0	1826647..1827951	+	434	110668469	purD	HQ2560A	-	phosphoribosylamine--glycine ligase
1494	 46.82	0	1828170..1828688	+	172	110668470	-	HQ2561A	-	acetyltransferase-like protein
1495	 44.91	-1	1829767..1830561	-	264	110668471	msc	HQ2562A	-	mechanosensitive ion channel
1496	 43.26	-1	1830573..1831388	-	271	110668472	-	HQ2563A	-	hypothetical protein
1497	 48.54	0	1832060..1832368	+	102	110668473	tfbA	HQ2564A	-	transcription initiation factor TFB
1498	 50.29	0	1832927..1833439	-	170	110668474	ppaT	HQ2565A	-	phosphopantetheine adenylyltransferase
1499	 49.36	0	1833619..1834710	-	363	110668475	gcs2	HQ2566A	-	carboxylate-amine ligase
1500	 47.99	0	1834976..1835623	-	215	110668476	flpA	HQ2567A	-	fibrillarin
1501	 49.18	0	1835620..1836477	-	285	110668477	nop56	HQ2568A	-	pre-rRNA-processing protein nop56
1502	 47.65	0	1836887..1837375	+	162	110668478	-	HQ2569A	-	hypothetical protein
1503	 49.57	0	1839108..1840148	+	346	110668479	tfbA	HQ2571A	-	transcription initiation factor TFB
1504	 42.74	-1	1840290..1840406	-	38	110668480	-	HQ2572A	-	hypothetical protein
1505	 49.02	0	1840827..1841081	-	84	110668481	tif2b	HQ2573A	-	translation initiation factor aIF-2 beta subunit
1506	 49.37	0	1841291..1841527	+	78	110668482	-	HQ2574A	-	hypothetical protein
1507	 46.75	0	1842597..1843073	-	158	110668483	-	HQ2576A	-	hypothetical protein
1508	 48.13	0	1843103..1844116	-	337	110668484	ogg	HQ2577A	-	DNA N-glycosylase / DNA lyase
1509	 47.13	0	1844406..1846028	-	540	110668485	malQ	HQ2578A	-	4-alpha-glucanotransferase
1510	 45.36	0	1846532..1848460	+	642	110668486	thrS	HQ2579A	-	threonine--tRNA ligase
1511	 47.98	0	1848565..1850250	-	561	110668487	nadE	HQ2580A	-	NAD(+) synthase (glutamine-hydrolyzing)
48.79	MEAN

3.84	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.