IslandPathversion 1.0

IslandPath Analysis: Haloquadratum walsbyi DSM 16790



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 48.79 STD DEV: 3.84
Haloquadratum walsbyi DSM 16790, complete genome - 1..3132494
2610 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1347	 47.44	0	1643093..1643482	+	129	110668323	glo	HQ2401A	-	lyase / dioxygenase ( lactoylglutathione lyase, aromatic compounds dioxygenase)
1348	 50.62	0	1644079..1645599	+	506	110668324	menE	HQ2402A	-	O-succinylbenzoic acid--CoA ligase
1349	 49.13	0	1645871..1646731	-	286	110668325	-	HQ2403A	-	phosphoesterase
1350	 47.61	0	1646909..1648954	-	681	110668326	-	HQ2404A	-	hypothetical protein
1351	 49.88	0	1648951..1650237	-	428	110668327	rpa	HQ2405A	-	replication factor A
1352	 46.09	0	1650391..1651644	+	417	110668328	-	HQ2406A	-	permease
1353	 43.20	-1	1651718..1652011	-	97	110668329	padR	HQ2407A	-	transcription regulator
1354	 47.51	0	1652536..1653318	+	260	110668330	-	HQ2408A	-	hypothetical protein
1355	 49.96	0	1653579..1654769	-	396	110668331	-	HQ2409A	-	hypothetical protein
1356	 46.67	0	1654888..1655337	-	149	110668332	-	HQ2410A	-	hypothetical protein
1357	 46.78	0	1655524..1656981	+	485	110668333	-	HQ2411A	-	hypothetical protein
1358	 49.07	0	1657146..1658384	+	412	110668334	rspA	HQ2412A	-	molecular chaperone P45
1359	 48.03	0	1658549..1659283	-	244	110668335	-	HQ2413A	-	hypothetical protein
1360	 49.07	0	1659556..1659879	-	107	110668336	fer	HQ2414A	-	ferredoxin
1361	 47.75	0	1660201..1660623	-	140	110668337	-	HQ2415A	-	hypothetical protein
1362	 48.94	0	1660863..1661381	-	172	110668338	ubiE	HQ2416A	-	menaquinone biosynthesis methyltransferase UbiE
1363	 50.81	0	1661692..1662366	+	224	110668339	-	HQ2417A	-	hypothetical protein
1364	 48.22	0	1662685..1663665	+	326	110668340	rad2	HQ2418A	-	flap endonuclease-1
1365	 52.08	0	1664962..1665105	-	47	110668341	-	HQ2419A	-	IS1341-type transposase
1366	 53.04	+1	1665203..1665679	-	158	110668342	-	HQ2420A	-	IS1341-type transposase
1367	 46.41	0	1665781..1666086	+	101	110668343	-	HQ2421A	-	hypothetical protein
1368	 47.96	0	1666284..1667192	-	302	110668344	-	HQ2422A	-	hypothetical protein
1369	 46.17	0	1667195..1667599	-	134	110668345	ptpS	HQ2423A	-	6-pyruvoyltetrahydropterin synthase
1370	 48.14	0	1667860..1668933	-	357	110668346	tdh	HQ2425A	-	oxidoreductase ( Zn-dependent dehydrogenases, threonine 3-dehydrogenase)
1371	 49.71	0	1669136..1669996	-	286	110668347	gch3	HQ2427A	-	GTP cyclohydrolase III
1372	 48.22	0	1670319..1671749	+	476	110668348	aslA	HQ2428A	-	arylsulfatase
1373	 46.25	0	1671867..1672106	-	79	110668349	-	HQ2429A	-	hypothetical protein
1374	 47.82	0	1672322..1673260	-	312	110668350	arsA	HQ2430A	-	transport ATPase ( substrate arsenite)
1375	 46.72	0	1673583..1675151	-	522	110668351	-	HQ2431A	-	deoxyribodipyrimidine photolyase-related protein
1376	 49.85	0	1675429..1676094	-	221	110668352	rnhA	HQ2432A	-	ribonuclease H I
1377	 43.66	-1	1676308..1676820	+	170	110668353	-	HQ2434A	-	transcription regulator
1378	 45.67	0	1677324..1677623	+	99	110668354	-	HQ2435A	-	hypothetical protein
1379	 52.08	0	1678517..1678996	-	159	110668355	-	HQ2437A	-	hypothetical protein
1380	 50.56	0	1680193..1681452	+	419	110668356	-	HQ2439A	-	major facilitator superfamily transporter
1381	 47.83	0	1681753..1682649	+	298	110668357	-	HQ2440A	-	transporter of the drug/metabolite transporter (DMT) superfamily
1382	 49.03	0	1682728..1684536	-	602	110668358	sdhA	HQ2441A	-	succinate dehydrogenase, subunit A (flavoprotein)
1383	 43.00	-1	1684767..1685273	+	168	110668359	-	HQ2442A	-	hypothetical protein
1384	 44.29	-1	1685367..1685585	-	72	110668360	-	HQ2443A	-	hypothetical protein
1385	 36.84	-2	1685849..1685962	-	37	110668361	-	HQ2444A	-	hypothetical protein
1386	 45.18	0	1686902..1687492	-	196	110668362	trxB	HQ2445A	-	thioredoxin reductase-like protein
1387	 43.58	-1	1688692..1689345	-	217	110668363	-	HQ2447A	-	hypothetical protein
1388	 50.40	0	1689858..1690607	+	249	110668364	oxr	HQ2448A	-	oxidoreductase
1389	 57.33	+2	1690758..1691057	-	99	110668365	-	HQ2449A	-	hypothetical protein
1390	 57.76	+2	1691094..1692227	+	377	110668366	rbsB	HQ2450A	-	ABC-type transport system, substrate-binding protein
1391	 57.91	+2	1692289..1693887	+	532	110668367	rbsA	HQ2451A	-	ABC-type ribose transport system, ATP-binding protein
1392	 58.06	+2	1694022..1695113	+	363	110668368	rbsC1	HQ2452A	-	ABC-type ribose transport system, permease protein
1393	 58.20	+2	1695106..1696227	+	373	110668369	rbsC2	HQ2453A	-	ABC-type ribose transport system, permease protein
1394	 49.73	0	1697898..1698641	-	247	110668370	psmA2	HQ2454A	-	proteasome subunit alpha
1395	 49.15	0	1698901..1699488	-	195	110668371	folA	HQ2455A	-	dihydrofolate reductase
1396	 49.16	0	1699488..1700498	-	336	110668372	thyA	HQ2456A	-	thymidylate synthase
1397	 43.23	-1	1700692..1701267	+	191	110668373	-	HQ2457A	-	hydrolase
1398	 48.84	0	1701675..1701977	-	100	110668374	-	HQ2458A	-	hypothetical protein
1399	 42.95	-1	1703123..1703278	+	51	110668375	-	HQ2459A	-	hypothetical protein
1400	 53.04	+1	1704193..1705623	-	476	110668376	-	HQ2460A	-	Tn5-like transposase
1401	 50.17	0	1706234..1706833	-	199	110668377	sod	HQ2461A	-	superoxide dismutase
1402	 51.52	0	1707009..1707437	+	142	110668378	-	HQ2462A	-	hypothetical protein
1403	 47.46	0	1708553..1709989	-	478	110668379	phr	HQ2463A	-	deoxyribodipyrimidine photolyase
1404	 47.42	0	1710015..1710731	-	238	110668380	-	HQ2464A	-	hypothetical protein
1405	 47.64	0	1710904..1712112	-	402	110668381	folP	HQ2465A	-	dihydropteroate synthase
1406	 47.69	0	1712703..1713287	+	194	110668382	-	HQ2466A	-	hypothetical protein
1407	 45.45	0	1713297..1714295	+	332	110668383	-	HQ2467A	-	tRNA/rRNA methyltransferase
1408	 49.33	0	1714357..1716282	-	641	110668384	gatE	HQ2468A	-	glutamyl-tRNA(Gln) amidotransferase subunit E
1409	 47.63	0	1717175..1718629	-	484	110668385	fumC	HQ2471A	-	fumarate hydratase
1410	 48.89	0	1719104..1719373	-	89	110668386	bolA	HQ2473A	-	morphology/transcription regulator BolA  family protein
1411	 49.72	0	1719517..1719870	-	117	110668387	-	HQ2474A	-	hypothetical protein
1412	 49.09	0	1720301..1721239	-	312	110668388	dppC	HQ2475A	-	ABC-type dipeptide/oligopeptide/nickel transport systems, permease protein
1413	 45.69	0	1721392..1722435	-	347	110668389	dppB	HQ2476A	-	ABC-type dipeptide/oligopeptide/nickel transport systems, permease protein
1414	 47.86	0	1722578..1724305	-	575	110668390	dppA	HQ2477A	-	ABC-type dipeptide/oligopeptide/nickel transport system, substrate-binding protein
1415	 46.88	0	1724472..1727054	-	860	110668391	dppDF	HQ2478A	-	ABC-type dipeptide/oligopeptide/nickel transport systems, ATP-binding protein I & II
1416	 43.65	-1	1727252..1727881	+	209	110668392	-	HQ2479A	-	hypothetical protein
1417	 49.16	0	1728073..1728489	-	138	110668393	-	HQ2480A	-	hypothetical protein
1418	 47.44	0	1728652..1729665	+	337	110668394	mutY	HQ2481A	-	A/G-specific adenine glycosylase
1419	 44.67	-1	1730318..1730467	-	49	110668395	-	HQ2483A	-	IS200-type transposase (nonfunctional,N-terminal part)
1420	 48.15	0	1730527..1730661	+	44	110668396	-	HQ2484A	-	hypothetical protein
1421	 55.86	+1	1730658..1731980	+	440	110668397	-	HQ2485A	-	IS1341-type transposase
1422	 42.98	-1	1732347..1732460	+	37	110668398	-	HQ2486A	-	hypothetical protein
1423	 50.00	0	1733261..1733968	-	235	110668399	cinA	HQ2488A	-	CinA-like domain-containing protein
1424	 47.71	0	1734060..1734866	-	268	110668400	-	HQ2489A	-	hypothetical protein
1425	 45.60	0	1735000..1735920	-	306	110668401	-	HQ2490A	-	hypothetical protein
1426	 46.89	0	1735920..1736450	-	176	110668402	tfeA	HQ2491A	-	transcription initiation factor IIE alpha subunit-like protein
1427	 47.25	0	1736621..1737202	-	193	110668403	-	HQ2492A	-	tRNA 2'-O-methylase
1428	 44.01	-1	1737440..1738525	+	361	110668404	dadA	HQ2493A	-	glycine/D-amino acid oxidases (deaminating)
1429	 44.93	-1	1738612..1739637	+	341	110668405	galE	HQ2494A	-	nucleoside-diphosphate-sugar epimerase ( UDP-glucose 4-epimerase)
1430	 45.75	0	1740203..1741096	+	297	110668406	-	HQ2496A	-	hypothetical protein
1431	 57.34	+2	1741307..1741810	+	167	110668407	-	HQ2497A	-	glycine-rich protein
1432	 46.71	0	1742112..1743098	-	328	110668408	iunH	HQ2498A	-	inosine-uridine preferring nucleoside hydrolase
1433	 45.22	0	1743308..1744603	-	431	110668409	-	HQ2499A	-	hexosyltransferase
1434	 45.78	0	1744704..1745948	-	414	110668410	-	HQ2500A	-	hexosyltransferase 1
1435	 50.18	0	1746121..1746399	+	92	110668411	rnp4	HQ2501A	-	ribonuclease P protein component 4
1436	 48.41	0	1746491..1746742	+	83	110668412	-	HQ2502A	-	hypothetical protein
1437	 46.36	0	1746739..1747659	+	306	110668413	mscS	HQ2503A	-	mechanosensitive channel
1438	 43.96	-1	1747654..1748472	-	272	110668414	-	HQ2504A	-	hypothetical protein
1439	 46.95	0	1749569..1749847	+	92	110668415	tatA	HQ2505A	-	sec-independent protein translocase component TatA
1440	 46.88	0	1750546..1752051	+	501	110668416	norM	HQ2506A	-	sodium-driven multidrug efflux pump
1441	 47.47	0	1752273..1752767	+	164	110668417	-	HQ2507A	-	hypothetical protein
1442	 48.33	0	1752805..1753851	-	348	110668418	-	HQ2508A	-	LPS glycosyltransferase
1443	 47.68	0	1755475..1756164	+	229	110668419	ribG	HQ2510A	-	hypothetical protein
1444	 45.72	0	1756249..1756587	+	112	110668420	trxA	HQ2511A	-	thioredoxin
1445	 50.92	0	1757468..1757740	+	90	110668421	-	HQ2512A	-	hypothetical protein
1446	 54.26	+1	1757733..1758296	+	187	110668422	-	HQ2513A	-	hypothetical protein
48.79	MEAN

3.84	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.