IslandPath Analysis: Haloquadratum walsbyi DSM 16790



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 48.79   STD DEV: 3.84
Haloquadratum walsbyi DSM 16790, complete genome - 1..3132494
2610 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1301	 47.23	0	1594053..1595714	+	553	110668277	kchA	HQ2351A	-	Kef-type potassium channel protein
1302	 48.20	0	1595725..1596585	-	286	110668278	coxC	HQ2352A	-	cytochrome-c-like terminal oxidase, subunit III
1303	 49.35	0	1596734..1597807	-	357	110668279	fdfT	HQ2353A	-	farnesyl-diphosphate farnesyltransferase (squalene synthase)
1304	 49.29	0	1598602..1598883	+	93	110668280	-	HQ2355A	-	hypothetical protein
1305	 50.93	0	1599017..1599715	-	232	110668281	pssA	HQ2356A	-	CDP-diacylglycerol--serine O-phosphatidyltransferase (phosphatidylserine synthase)
1306	 48.43	0	1599872..1600348	+	158	110668282	hcpH	HQ2357A	-	halocyanin hcpH
1307	 47.57	0	1600430..1601068	-	212	110668283	rps3aR	HQ2358A	-	30S ribosomal protein S3Ae
1308	 49.20	0	1601061..1601684	-	207	110668284	-	HQ2359A	-	rps operon protein
1309	 48.92	0	1601695..1603356	-	553	110668285	-	HQ2360A	-	rps operon protein
1310	 50.52	0	1603537..1604013	-	158	110668286	rps15p	HQ2361A	-	30S ribosomal protein S15P
1311	 55.36	+1	1605155..1605499	+	114	110668287	panD	HQ2363A	-	aspartate 1-decarboxylase precursor (aspartate alpha-decarboxylase)
1312	 45.24	0	1605908..1606327	+	139	110668288	-	HQ2364A	-	hypothetical protein
1313	 49.17	0	1606603..1607511	+	302	110668289	dapA	HQ2365A	-	dihydrodipicolinate synthase
1314	 52.83	+1	1607579..1608604	+	341	110668290	adh	HQ2366A	-	alcohol dehydrogenase
1315	 45.45	0	1609371..1609799	-	142	110668291	-	HQ2368A	-	homolog to lyase/ dioxygenase
1316	 48.50	0	1610035..1610700	+	221	110668292	tenA	HQ2369A	-	transcription regulator
1317	 48.85	0	1610789..1612360	+	523	110668293	putP	HQ2370A	-	sodium/proline symporter
1318	 47.89	0	1613028..1613597	+	189	110668294	-	HQ2371A	-	hypothetical protein
1319	 48.04	0	1613836..1614345	-	169	110668295	uspA	HQ2372A	-	stress response protein
1320	 48.08	0	1614971..1615648	+	225	110668296	-	HQ2373A	-	regulatory protein PrrC
1321	 48.06	0	1615645..1616262	+	205	110668297	trxA	HQ2374A	-	thioredoxin
1322	 48.07	0	1616393..1617091	+	232	110668298	ccdA	HQ2375A	-	cytochrome C biogenesis protein/thiol-disulfide transporter
1323	 45.91	0	1618138..1618773	+	211	110668299	mobA	HQ2376A	-	molybdopterin-guanine dinucleotide biosynthesis protein A
1324	 40.79	-2	1619635..1619862	-	75	110668300	-	HQ2377A	-	hypothetical protein
1325	 43.30	-1	1620084..1620404	+	106	110668301	-	HQ2378A	-	hypothetical protein
1326	 47.92	0	1620441..1621160	-	239	110668302	ugpQ	HQ2379A	-	glycerophosphodiester phosphodiesterase
1327	 51.79	0	1621281..1621979	-	232	110668303	-	HQ2380A	-	short chanin dehydrogenase/ reductase
1328	 48.90	0	1622028..1623485	-	485	110668304	-	HQ2381A	-	beta,beta-carotene 15,15'-monooxygenase; beta-carotene dioxygenase 1
1329	 50.40	0	1623675..1625174	-	499	110668305	guaB	HQ2382A	-	IMP dehydrogenase 1
1330	 54.31	+1	1625365..1625631	+	88	110668306	-	HQ2383A	-	hypothetical protein
1331	 51.20	0	1625638..1626555	+	305	110668307	-	HQ2384A	-	hypothetical protein
1332	 48.29	0	1626801..1627034	+	77	110668308	-	HQ2385A	-	hypothetical protein
1333	 46.53	0	1627477..1627620	+	47	110668309	-	HQ2386A	-	hypothetical protein
1334	 43.60	-1	1627672..1628226	-	184	110668310	-	HQ2387A	-	hypothetical protein
1335	 42.02	-1	1628532..1629176	-	214	110668311	-	HQ2388A	-	hypothetical protein
1336	 46.75	0	1630545..1631699	-	384	110668312	acd	HQ2389A	-	acyl-CoA dehydrogenase
1337	 47.79	0	1632082..1633575	+	497	110668313	-	HQ2390A	-	transport protein ( polysaccharide biosynthesis transport protein)
1338	 48.05	0	1633915..1634376	+	153	110668314	apa	HQ2391A	-	bis(5'-nucleosyl)-tetraphosphatase (asymmetrical) (diadenosine tetraphosphatase)
1339	 49.65	0	1634627..1635895	+	422	110668315	-	HQ2392A	-	hypothetical protein
1340	 46.84	0	1636027..1636707	-	226	110668316	-	HQ2393A	-	hypothetical protein
1341	 52.77	+1	1636937..1637713	+	258	110668317	fadA	HQ2394A	-	enoyl-CoA hydratase I
1342	 45.99	0	1638359..1638682	+	107	110668318	rpoM1	HQ2396A	-	DNA-directed RNA polymerase subunit M1
1343	 46.95	0	1638765..1639337	+	190	110668319	-	HQ2397A	-	hypothetical protein
1344	 52.80	+1	1639469..1640218	-	249	110668320	-	HQ2398A	-	methyltransferase
1345	 50.53	0	1640215..1640592	-	125	110668321	nac	HQ2399A	-	nascent polypeptide-associated complex protein
1346	 46.98	0	1640831..1642501	+	556	110668322	mcmA	HQ2400A	-	methylmalonyl-CoA mutase, subunit A
1347	 47.44	0	1643093..1643482	+	129	110668323	glo	HQ2401A	-	lyase / dioxygenase ( lactoylglutathione lyase, aromatic compounds dioxygenase)
1348	 50.62	0	1644079..1645599	+	506	110668324	menE	HQ2402A	-	O-succinylbenzoic acid--CoA ligase
1349	 49.13	0	1645871..1646731	-	286	110668325	-	HQ2403A	-	phosphoesterase
1350	 47.61	0	1646909..1648954	-	681	110668326	-	HQ2404A	-	hypothetical protein
1351	 49.88	0	1648951..1650237	-	428	110668327	rpa	HQ2405A	-	replication factor A
1352	 46.09	0	1650391..1651644	+	417	110668328	-	HQ2406A	-	permease
1353	 43.20	-1	1651718..1652011	-	97	110668329	padR	HQ2407A	-	transcription regulator
1354	 47.51	0	1652536..1653318	+	260	110668330	-	HQ2408A	-	hypothetical protein
1355	 49.96	0	1653579..1654769	-	396	110668331	-	HQ2409A	-	hypothetical protein
1356	 46.67	0	1654888..1655337	-	149	110668332	-	HQ2410A	-	hypothetical protein
1357	 46.78	0	1655524..1656981	+	485	110668333	-	HQ2411A	-	hypothetical protein
1358	 49.07	0	1657146..1658384	+	412	110668334	rspA	HQ2412A	-	molecular chaperone P45
1359	 48.03	0	1658549..1659283	-	244	110668335	-	HQ2413A	-	hypothetical protein
1360	 49.07	0	1659556..1659879	-	107	110668336	fer	HQ2414A	-	ferredoxin
1361	 47.75	0	1660201..1660623	-	140	110668337	-	HQ2415A	-	hypothetical protein
1362	 48.94	0	1660863..1661381	-	172	110668338	ubiE	HQ2416A	-	menaquinone biosynthesis methyltransferase UbiE
1363	 50.81	0	1661692..1662366	+	224	110668339	-	HQ2417A	-	hypothetical protein
1364	 48.22	0	1662685..1663665	+	326	110668340	rad2	HQ2418A	-	flap endonuclease-1
1365	 52.08	0	1664962..1665105	-	47	110668341	-	HQ2419A	-	IS1341-type transposase
1366	 53.04	+1	1665203..1665679	-	158	110668342	-	HQ2420A	-	IS1341-type transposase
1367	 46.41	0	1665781..1666086	+	101	110668343	-	HQ2421A	-	hypothetical protein
1368	 47.96	0	1666284..1667192	-	302	110668344	-	HQ2422A	-	hypothetical protein
1369	 46.17	0	1667195..1667599	-	134	110668345	ptpS	HQ2423A	-	6-pyruvoyltetrahydropterin synthase
1370	 48.14	0	1667860..1668933	-	357	110668346	tdh	HQ2425A	-	oxidoreductase ( Zn-dependent dehydrogenases, threonine 3-dehydrogenase)
1371	 49.71	0	1669136..1669996	-	286	110668347	gch3	HQ2427A	-	GTP cyclohydrolase III
1372	 48.22	0	1670319..1671749	+	476	110668348	aslA	HQ2428A	-	arylsulfatase
1373	 46.25	0	1671867..1672106	-	79	110668349	-	HQ2429A	-	hypothetical protein
1374	 47.82	0	1672322..1673260	-	312	110668350	arsA	HQ2430A	-	transport ATPase ( substrate arsenite)
1375	 46.72	0	1673583..1675151	-	522	110668351	-	HQ2431A	-	deoxyribodipyrimidine photolyase-related protein
1376	 49.85	0	1675429..1676094	-	221	110668352	rnhA	HQ2432A	-	ribonuclease H I
1377	 43.66	-1	1676308..1676820	+	170	110668353	-	HQ2434A	-	transcription regulator
1378	 45.67	0	1677324..1677623	+	99	110668354	-	HQ2435A	-	hypothetical protein
1379	 52.08	0	1678517..1678996	-	159	110668355	-	HQ2437A	-	hypothetical protein
1380	 50.56	0	1680193..1681452	+	419	110668356	-	HQ2439A	-	major facilitator superfamily transporter
1381	 47.83	0	1681753..1682649	+	298	110668357	-	HQ2440A	-	transporter of the drug/metabolite transporter (DMT) superfamily
1382	 49.03	0	1682728..1684536	-	602	110668358	sdhA	HQ2441A	-	succinate dehydrogenase, subunit A (flavoprotein)
1383	 43.00	-1	1684767..1685273	+	168	110668359	-	HQ2442A	-	hypothetical protein
1384	 44.29	-1	1685367..1685585	-	72	110668360	-	HQ2443A	-	hypothetical protein
1385	 36.84	-2	1685849..1685962	-	37	110668361	-	HQ2444A	-	hypothetical protein
1386	 45.18	0	1686902..1687492	-	196	110668362	trxB	HQ2445A	-	thioredoxin reductase-like protein
1387	 43.58	-1	1688692..1689345	-	217	110668363	-	HQ2447A	-	hypothetical protein
1388	 50.40	0	1689858..1690607	+	249	110668364	oxr	HQ2448A	-	oxidoreductase
1389	 57.33	+2	1690758..1691057	-	99	110668365	-	HQ2449A	-	hypothetical protein
1390	 57.76	+2	1691094..1692227	+	377	110668366	rbsB	HQ2450A	-	ABC-type transport system, substrate-binding protein
1391	 57.91	+2	1692289..1693887	+	532	110668367	rbsA	HQ2451A	-	ABC-type ribose transport system, ATP-binding protein
1392	 58.06	+2	1694022..1695113	+	363	110668368	rbsC1	HQ2452A	-	ABC-type ribose transport system, permease protein
1393	 58.20	+2	1695106..1696227	+	373	110668369	rbsC2	HQ2453A	-	ABC-type ribose transport system, permease protein
1394	 49.73	0	1697898..1698641	-	247	110668370	psmA2	HQ2454A	-	proteasome subunit alpha
1395	 49.15	0	1698901..1699488	-	195	110668371	folA	HQ2455A	-	dihydrofolate reductase
1396	 49.16	0	1699488..1700498	-	336	110668372	thyA	HQ2456A	-	thymidylate synthase
1397	 43.23	-1	1700692..1701267	+	191	110668373	-	HQ2457A	-	hydrolase
1398	 48.84	0	1701675..1701977	-	100	110668374	-	HQ2458A	-	hypothetical protein
1399	 42.95	-1	1703123..1703278	+	51	110668375	-	HQ2459A	-	hypothetical protein
1400	 53.04	+1	1704193..1705623	-	476	110668376	-	HQ2460A	-	Tn5-like transposase
48.79	MEAN

3.84	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.