IslandPath Analysis: Haloquadratum walsbyi DSM 16790



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 48.79   STD DEV: 3.84
Haloquadratum walsbyi DSM 16790, complete genome - 1..3132494
2610 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1260	 56.39	+1	1552026..1552346	-	106	110668236	-	HQ2305A	-	cobalamin transport operon protein
1261	 53.30	+1	1552346..1553026	-	226	110668237	cbiM	HQ2306A	-	ABC-type cobalt transport system, permease protein I
1262	 50.90	0	1553181..1554347	+	388	110668238	acaB	HQ2307A	-	acetyl-CoA C-acyltransferase
1263	 48.58	0	1554344..1554730	+	128	110668239	-	HQ2308A	-	hypothetical protein
1264	 44.62	-1	1554896..1555639	-	247	110668240	phaB	HQ2309A	-	3-oxoacyl-[acyl-carrier-protein] reductase (3-ketoacyl-acyl carrier protein reductase) PhaB
1265	 46.12	0	1555807..1557222	-	471	110668241	phaC	HQ2310A	-	Poly-beta-hydroxybutyrate polymerase polyhydroxyalkanoic acid synthase PhaC
1266	 49.55	0	1557219..1557773	-	184	110668242	-	HQ2311A	-	phbC-phbA intergenic region protein
1267	 49.25	0	1557952..1558416	-	154	110668243	-	HQ2312A	-	hypothetical protein
1268	 48.91	0	1558422..1558787	-	121	110668244	-	HQ2313A	-	hypothetical protein
1269	 48.08	0	1558909..1559586	+	225	110668245	maoC	HQ2315A	-	enoyl-CoA hydratase
1270	 46.83	0	1559676..1560431	+	251	110668246	-	HQ2316A	-	hypothetical protein
1271	 49.16	0	1561085..1563808	-	907	110668247	leuS	HQ2317A	-	leucyl-tRNA synthetase
1272	 53.33	+1	1566363..1566887	+	174	110668248	-	HQ2319A	-	transposase homolog (ISHnew96)
1273	 47.12	0	1569129..1569527	+	132	110668249	-	HQ2323A	-	hypothetical protein
1274	 45.63	0	1569664..1570281	-	205	110668250	msrA	HQ2324A	-	peptide methionine sulfoxide reductase (S-form specific)
1275	 50.42	0	1570386..1571801	+	471	110668251	-	HQ2325A	-	oxidoreductase, oxygen dependent,FAD-dependent protein
1276	 45.65	0	1572203..1573201	-	332	110668252	epf	HQ2326A	-	mRNA cleavage and polyadenylation specificity factor-like protein
1277	 48.68	0	1573339..1575195	-	618	110668253	ligB	HQ2327A	-	DNA ligase (ATP)
1278	 46.71	0	1575312..1575737	-	141	110668254	-	HQ2328A	-	hypothetical protein
1279	 50.43	0	1575812..1576501	-	229	110668255	glpG	HQ2329A	-	rhomboid family protein
1280	 47.42	0	1576734..1577024	-	96	110668256	-	HQ2330A	-	hypothetical protein
1281	 50.63	0	1577137..1577928	+	263	110668257	-	HQ2331A	-	hypothetical protein
1282	 49.49	0	1578154..1578846	+	230	110668258	-	HQ2332A	-	S-adenosylmethionine-dependent methyltransferase
1283	 46.26	0	1579266..1579412	-	48	110668259	-	HQ2333A	-	hypothetical protein
1284	 46.63	0	1579731..1580768	-	345	110668260	nce	HQ2334A	-	Na+/Ca2+-antiporter
1285	 48.47	0	1580958..1581842	+	294	110668261	-	HQ2335A	-	nucleoside diphosphate sugar epimerase
1286	 49.59	0	1581955..1582440	+	161	110668262	ferA	HQ2336A	-	ferredoxin I
1287	 50.25	0	1582462..1582662	+	66	110668263	-	HQ2337A	-	hypothetical protein
1288	 47.45	0	1582732..1583064	-	110	110668264	-	HQ2338A	-	hypothetical protein
1289	 47.92	0	1583381..1585066	+	561	110668265	hflX	HQ2339A	-	GTP-binding protein
1290	 45.37	0	1585096..1585635	-	179	110668266	moaC	HQ2340A	-	putative molybdenum cofactor biosynthesis protein C
1291	 49.83	0	1585628..1587130	-	500	110668267	-	HQ2341A	-	sugar kinase
1292	 50.30	0	1587375..1588559	+	394	110668268	-	HQ2342A	-	major facilitator superfamily transporter
1293	 44.29	-1	1588644..1588862	-	72	110668269	-	HQ2343A	-	hypothetical protein
1294	 46.38	0	1589489..1590178	+	229	110668270	nqrF	HQ2344A	-	FAD/NAD binding oxidoreductase; Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrF
1295	 41.79	-1	1590277..1590666	-	129	110668271	-	HQ2345A	-	hypothetical protein
1296	 49.55	0	1590912..1591355	+	147	110668272	usp	HQ2346A	-	stress response protein
1297	 45.80	0	1591470..1592303	+	277	110668273	-	HQ2347A	-	hypothetical protein
1298	 51.02	0	1592383..1592529	-	48	110668274	-	HQ2348A	-	hypothetical protein
1299	 45.92	0	1592811..1593263	-	150	110668275	-	HQ2349A	-	hypothetical protein
1300	 55.11	+1	1593376..1593600	-	74	110668276	-	HQ2350A	-	hypothetical protein
1301	 47.23	0	1594053..1595714	+	553	110668277	kchA	HQ2351A	-	Kef-type potassium channel protein
1302	 48.20	0	1595725..1596585	-	286	110668278	coxC	HQ2352A	-	cytochrome-c-like terminal oxidase, subunit III
1303	 49.35	0	1596734..1597807	-	357	110668279	fdfT	HQ2353A	-	farnesyl-diphosphate farnesyltransferase (squalene synthase)
1304	 49.29	0	1598602..1598883	+	93	110668280	-	HQ2355A	-	hypothetical protein
1305	 50.93	0	1599017..1599715	-	232	110668281	pssA	HQ2356A	-	CDP-diacylglycerol--serine O-phosphatidyltransferase (phosphatidylserine synthase)
1306	 48.43	0	1599872..1600348	+	158	110668282	hcpH	HQ2357A	-	halocyanin hcpH
1307	 47.57	0	1600430..1601068	-	212	110668283	rps3aR	HQ2358A	-	30S ribosomal protein S3Ae
1308	 49.20	0	1601061..1601684	-	207	110668284	-	HQ2359A	-	rps operon protein
1309	 48.92	0	1601695..1603356	-	553	110668285	-	HQ2360A	-	rps operon protein
1310	 50.52	0	1603537..1604013	-	158	110668286	rps15p	HQ2361A	-	30S ribosomal protein S15P
1311	 55.36	+1	1605155..1605499	+	114	110668287	panD	HQ2363A	-	aspartate 1-decarboxylase precursor (aspartate alpha-decarboxylase)
1312	 45.24	0	1605908..1606327	+	139	110668288	-	HQ2364A	-	hypothetical protein
1313	 49.17	0	1606603..1607511	+	302	110668289	dapA	HQ2365A	-	dihydrodipicolinate synthase
1314	 52.83	+1	1607579..1608604	+	341	110668290	adh	HQ2366A	-	alcohol dehydrogenase
1315	 45.45	0	1609371..1609799	-	142	110668291	-	HQ2368A	-	homolog to lyase/ dioxygenase
1316	 48.50	0	1610035..1610700	+	221	110668292	tenA	HQ2369A	-	transcription regulator
1317	 48.85	0	1610789..1612360	+	523	110668293	putP	HQ2370A	-	sodium/proline symporter
1318	 47.89	0	1613028..1613597	+	189	110668294	-	HQ2371A	-	hypothetical protein
1319	 48.04	0	1613836..1614345	-	169	110668295	uspA	HQ2372A	-	stress response protein
1320	 48.08	0	1614971..1615648	+	225	110668296	-	HQ2373A	-	regulatory protein PrrC
1321	 48.06	0	1615645..1616262	+	205	110668297	trxA	HQ2374A	-	thioredoxin
1322	 48.07	0	1616393..1617091	+	232	110668298	ccdA	HQ2375A	-	cytochrome C biogenesis protein/thiol-disulfide transporter
1323	 45.91	0	1618138..1618773	+	211	110668299	mobA	HQ2376A	-	molybdopterin-guanine dinucleotide biosynthesis protein A
1324	 40.79	-2	1619635..1619862	-	75	110668300	-	HQ2377A	-	hypothetical protein
1325	 43.30	-1	1620084..1620404	+	106	110668301	-	HQ2378A	-	hypothetical protein
1326	 47.92	0	1620441..1621160	-	239	110668302	ugpQ	HQ2379A	-	glycerophosphodiester phosphodiesterase
1327	 51.79	0	1621281..1621979	-	232	110668303	-	HQ2380A	-	short chanin dehydrogenase/ reductase
1328	 48.90	0	1622028..1623485	-	485	110668304	-	HQ2381A	-	beta,beta-carotene 15,15'-monooxygenase; beta-carotene dioxygenase 1
1329	 50.40	0	1623675..1625174	-	499	110668305	guaB	HQ2382A	-	IMP dehydrogenase 1
1330	 54.31	+1	1625365..1625631	+	88	110668306	-	HQ2383A	-	hypothetical protein
1331	 51.20	0	1625638..1626555	+	305	110668307	-	HQ2384A	-	hypothetical protein
1332	 48.29	0	1626801..1627034	+	77	110668308	-	HQ2385A	-	hypothetical protein
1333	 46.53	0	1627477..1627620	+	47	110668309	-	HQ2386A	-	hypothetical protein
1334	 43.60	-1	1627672..1628226	-	184	110668310	-	HQ2387A	-	hypothetical protein
1335	 42.02	-1	1628532..1629176	-	214	110668311	-	HQ2388A	-	hypothetical protein
1336	 46.75	0	1630545..1631699	-	384	110668312	acd	HQ2389A	-	acyl-CoA dehydrogenase
1337	 47.79	0	1632082..1633575	+	497	110668313	-	HQ2390A	-	transport protein ( polysaccharide biosynthesis transport protein)
1338	 48.05	0	1633915..1634376	+	153	110668314	apa	HQ2391A	-	bis(5'-nucleosyl)-tetraphosphatase (asymmetrical) (diadenosine tetraphosphatase)
1339	 49.65	0	1634627..1635895	+	422	110668315	-	HQ2392A	-	hypothetical protein
1340	 46.84	0	1636027..1636707	-	226	110668316	-	HQ2393A	-	hypothetical protein
1341	 52.77	+1	1636937..1637713	+	258	110668317	fadA	HQ2394A	-	enoyl-CoA hydratase I
1342	 45.99	0	1638359..1638682	+	107	110668318	rpoM1	HQ2396A	-	DNA-directed RNA polymerase subunit M1
1343	 46.95	0	1638765..1639337	+	190	110668319	-	HQ2397A	-	hypothetical protein
1344	 52.80	+1	1639469..1640218	-	249	110668320	-	HQ2398A	-	methyltransferase
1345	 50.53	0	1640215..1640592	-	125	110668321	nac	HQ2399A	-	nascent polypeptide-associated complex protein
1346	 46.98	0	1640831..1642501	+	556	110668322	mcmA	HQ2400A	-	methylmalonyl-CoA mutase, subunit A
1347	 47.44	0	1643093..1643482	+	129	110668323	glo	HQ2401A	-	lyase / dioxygenase ( lactoylglutathione lyase, aromatic compounds dioxygenase)
1348	 50.62	0	1644079..1645599	+	506	110668324	menE	HQ2402A	-	O-succinylbenzoic acid--CoA ligase
1349	 49.13	0	1645871..1646731	-	286	110668325	-	HQ2403A	-	phosphoesterase
1350	 47.61	0	1646909..1648954	-	681	110668326	-	HQ2404A	-	hypothetical protein
1351	 49.88	0	1648951..1650237	-	428	110668327	rpa	HQ2405A	-	replication factor A
1352	 46.09	0	1650391..1651644	+	417	110668328	-	HQ2406A	-	permease
1353	 43.20	-1	1651718..1652011	-	97	110668329	padR	HQ2407A	-	transcription regulator
1354	 47.51	0	1652536..1653318	+	260	110668330	-	HQ2408A	-	hypothetical protein
1355	 49.96	0	1653579..1654769	-	396	110668331	-	HQ2409A	-	hypothetical protein
1356	 46.67	0	1654888..1655337	-	149	110668332	-	HQ2410A	-	hypothetical protein
1357	 46.78	0	1655524..1656981	+	485	110668333	-	HQ2411A	-	hypothetical protein
1358	 49.07	0	1657146..1658384	+	412	110668334	rspA	HQ2412A	-	molecular chaperone P45
1359	 48.03	0	1658549..1659283	-	244	110668335	-	HQ2413A	-	hypothetical protein
48.79	MEAN

3.84	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.