IslandPathversion 1.0

IslandPath Analysis: Haloquadratum walsbyi DSM 16790



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 48.79 STD DEV: 3.84
Haloquadratum walsbyi DSM 16790, complete genome - 1..3132494
2610 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1174	 53.15	+1	1439683..1441458	+	591	110668150	nirA	HQ2212A	-	ferredoxin--nitrite reductase
1175	 56.54	+2	1441591..1443714	+	707	110668151	narB	HQ2213A	-	nitrate reductase, catalytic subunit
1176	 49.65	0	1443736..1444017	+	93	110668152	-	HQ2214A	-	hypothetical protein
1177	 47.58	0	1444721..1445443	-	240	110668153	-	HQ2215A	-	hypothetical protein
1178	 44.57	-1	1445981..1447066	+	361	110668154	-	HQ2216A	-	hypothetical protein
1179	 43.93	-1	1447456..1448163	+	235	110668155	-	HQ2217A	-	hypothetical protein
1180	 54.11	+1	1449026..1449646	-	206	110668156	gufA	HQ2218A	-	divalent heavy-metal cations transporter
1181	 44.85	-1	1450116..1450523	+	135	110668157	-	HQ2219A	-	hypothetical protein
1182	 43.86	-1	1451383..1451724	-	113	110668158	-	HQ2220A	-	hypothetical protein
1183	 46.39	0	1451915..1452343	+	142	110668159	nikR	HQ2221A	-	putative nickel responsive regulator
1184	 47.75	0	1452513..1453580	-	355	110668160	-	HQ2222A	-	hypothetical protein
1185	 47.58	0	1454403..1455125	+	240	110668161	-	HQ2223A	-	hypothetical protein
1186	 57.58	+2	1456637..1456801	+	54	110668162	-	HQ2224A	-	hypothetical protein
1187	 52.69	+1	1457275..1457646	-	123	110668163	-	HQ2225A	-	transcription regulator
1188	 50.63	0	1458405..1459115	+	236	110668164	pncA	HQ2226A	-	isochorismatase
1189	 45.87	0	1459757..1460131	+	124	110668165	-	HQ2227A	-	hypothetical protein
1190	 52.33	0	1460338..1460853	+	171	110668166	-	HQ2228A	-	hypothetical protein
1191	 43.28	-1	1461238..1462323	+	361	110668167	-	HQ2229A	-	hypothetical protein
1192	 46.60	0	1462503..1462826	-	107	110668168	sugE	HQ2230A	-	small multidrug export protein
1193	 56.37	+1	1463309..1464541	+	410	110668169	-	HQ2231A	-	major facilitator superfamily transporter
1194	 49.23	0	1465132..1466496	+	454	110668170	-	HQ2232A	-	restriction system mrr-like protein
1195	 52.57	0	1466625..1468085	+	486	110668171	cat	HQ2233A	-	cationic amino acid transport protein
1196	 54.03	+1	1468178..1468897	+	239	110668172	-	HQ2234A	-	hypothetical protein
1197	 47.58	0	1468903..1469667	+	254	110668173	-	HQ2235A	-	hypothetical protein
1198	 51.17	0	1469920..1472223	-	767	110668174	metE	HQ2236A	-	5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase
1199	 56.02	+1	1473218..1474297	-	359	110668175	ocd	HQ2237A	-	ornithine cyclodeaminase
1200	 50.47	0	1474617..1475579	-	320	110668176	gufA	HQ2238A	-	divalent heavy-metal cations transporter
1201	 48.09	0	1475808..1475990	+	60	110668177	-	HQ2239A	-	hypothetical protein
1202	 46.92	0	1476441..1478288	-	615	110668178	hyuB	HQ2241A	-	N-methylhydantoinase B (ATP-hydrolyzing)
1203	 48.98	0	1478347..1480404	-	685	110668179	hyuA	HQ2242A	-	N-methylhydantoinase A (ATP-hydrolyzing)
1204	 48.37	0	1481158..1481403	-	81	110668180	-	HQ2243A	-	hypothetical protein
1205	 48.82	0	1481727..1482746	-	339	110668181	cysA	HQ2244A	-	ABC-type sulfate/molybdate transport systems,ATP-binding protein
1206	 46.02	0	1482747..1483763	-	338	110668182	cysT	HQ2245A	-	ABC-type sulfate/molybdate transport system,permease protein
1207	 48.13	0	1483760..1484773	-	337	110668183	cysU	HQ2246A	-	ABC-type sulfate/molybdate transport systems,permease protein
1208	 49.15	0	1484779..1485948	-	389	110668184	-	HQ2247A	-	sulfate/molybdate ABC transporter periplasmic substrate-binding protein
1209	 48.12	0	1486463..1487260	-	265	110668185	-	HQ2249A	-	hypothetical protein
1210	 46.33	0	1487597..1487773	+	58	110668186	-	HQ2250A	-	hypothetical protein
1211	 46.75	0	1487955..1488185	+	76	110668187	-	HQ2251A	-	hypothetical protein
1212	 46.95	0	1488975..1491560	-	861	110668188	cadA	HQ2252A	-	cadmium-transporting ATPase
1213	 45.26	0	1492093..1492419	-	108	110668189	-	HQ2253A	-	hypothetical protein
1214	 44.30	-1	1492698..1493153	+	151	110668190	-	HQ2254A	-	hypothetical protein
1215	 48.86	0	1493502..1496432	+	976	110668191	-	HQ2255A	-	hypothetical protein
1216	 49.03	0	1496429..1497148	+	239	110668192	-	HQ2256A	-	hypothetical protein
1217	 50.67	0	1497157..1498506	+	449	110668193	-	HQ2257A	-	hypothetical protein
1218	 49.45	0	1498503..1500059	+	518	110668194	-	HQ2258A	-	hypothetical protein
1219	 48.41	0	1500183..1501157	-	324	110668195	moxR	HQ2259A	-	MoxR-like ATPase
1220	 44.44	-1	1501671..1502039	-	122	110668196	-	HQ2260A	-	hypothetical protein
1221	 48.37	0	1502221..1502619	-	132	110668197	-	HQ2261A	-	hypothetical protein
1222	 48.40	0	1502667..1503197	-	176	110668198	-	HQ2262A	-	hypothetical protein
1223	 44.39	-1	1503197..1503847	-	216	110668199	-	HQ2263A	-	hypothetical protein
1224	 44.81	-1	1504347..1504808	+	153	110668200	-	HQ2264A	-	hypothetical protein
1225	 45.34	0	1504980..1505462	-	160	110668201	-	HQ2265A	-	pyridoxamine 5'-phosphate oxidase
1226	 52.78	+1	1505704..1505847	-	47	110668202	-	HQ2266A	-	periplasmic serine proteinase (fragment)
1227	 47.83	0	1506295..1506846	+	183	110668203	-	HQ2268A	-	hypothetical protein
1228	 49.21	0	1508228..1509298	-	356	110668204	-	HQ2269A	-	CBS domain-containing protein
1229	 49.87	0	1509408..1510199	-	263	110668205	nagD	HQ2270A	-	putative N-acetyl-glucosamine catabolism protein
1230	 58.42	+2	1510607..1512364	+	585	110668206	-	HQ2271A	-	ferredoxin domain-containing protein
1231	 49.00	0	1513504..1514256	-	250	110668207	-	HQ2273A	-	hypothetical protein
1232	 44.96	0	1514491..1515393	+	300	110668208	-	HQ2274A	-	hypothetical protein
1233	 49.95	0	1516225..1518114	+	629	110668209	dap2	HQ2276A	-	dipeptidyl aminopeptidases/acylaminoacyl-peptidases
1234	 49.81	0	1519249..1519509	+	86	110668210	-	HQ2277A	-	hypothetical protein
1235	 46.35	0	1519653..1519844	+	63	110668211	-	HQ2278A	-	hypothetical protein
1236	 50.30	0	1520382..1521206	+	274	110668212	-	HQ2279A	-	hypothetical protein
1237	 48.01	0	1521210..1521761	+	183	110668213	entB	HQ2280A	-	isochorismatase
1238	 48.86	0	1522447..1523103	+	218	110668214	-	HQ2281A	-	hypothetical protein
1239	 54.48	+1	1523413..1524585	+	390	110668215	-	HQ2282A	-	hypothetical protein
1240	 51.27	0	1525231..1526016	-	261	110668216	-	HQ2283A	-	hypothetical protein
1241	 46.03	0	1526013..1526327	-	104	110668217	-	HQ2284A	-	hypothetical protein
1242	 50.54	0	1526428..1527822	-	464	110668218	-	HQ2285A	-	major facilitator superfamily transporter
1243	 49.61	0	1530353..1530991	-	212	110668219	-	HQ2287A	-	hypothetical protein
1244	 55.38	+1	1531271..1532404	+	377	110668220	-	HQ2288A	-	thiosulfate sulfurtransferase
1245	 50.53	0	1532517..1533272	+	251	110668221	-	HQ2289A	-	hypothetical protein
1246	 46.49	0	1534346..1534573	+	75	110668222	-	HQ2290A	-	hypothetical protein
1247	 49.10	0	1534835..1536058	-	407	110668223	oxlT	HQ2291A	-	oxalate/formate antiporter
1248	 45.28	0	1536710..1537069	+	119	110668224	-	HQ2293A	-	hypothetical protein
1249	 46.79	0	1537280..1537606	-	108	110668225	-	HQ2294A	-	hypothetical protein
1250	 49.80	0	1538024..1540312	-	762	110668226	chlID	HQ2295A	-	magnesium chelatase (protoporphyrin IX magnesium-chelatase)
1251	 50.42	0	1540356..1544288	+	1310	110668227	cobN	HQ2296A	-	cobalt chelatase
1252	 53.21	+1	1544278..1545057	+	259	110668228	cbiC	HQ2297A	-	precorrin-8X methylmutase
1253	 50.83	0	1545054..1545836	+	260	110668229	cbiE	HQ2298A	-	cobalt-precorrin-6Y C(5)-methyltransferase
1254	 46.93	0	1546227..1546763	+	178	110668230	-	HQ2299A	-	atp-binding cobalamin adenosyltransferase
1255	 47.45	0	1546860..1548134	-	424	110668231	argK	HQ2300A	-	transport ATPase, component for LAO/AO transport systems
1256	 47.72	0	1548131..1548547	-	138	110668232	mcmB	HQ2301A	-	methylmalonyl-CoA mutase, subunit B (cobalamin-binding subunit)
1257	 44.79	-1	1548839..1549702	+	287	110668233	hbd	HQ2302A	-	3-hydroxyacyl-CoA dehydrogenase
1258	 51.02	0	1550372..1551208	-	278	110668234	cbiO	HQ2303A	-	ABC-type cobalt transport system, ATP-binding protein
1259	 51.72	0	1551205..1552020	-	271	110668235	cbiQ	HQ2304A	-	ABC-type cobalt transport system, permease protein II
1260	 56.39	+1	1552026..1552346	-	106	110668236	-	HQ2305A	-	cobalamin transport operon protein
1261	 53.30	+1	1552346..1553026	-	226	110668237	cbiM	HQ2306A	-	ABC-type cobalt transport system, permease protein I
1262	 50.90	0	1553181..1554347	+	388	110668238	acaB	HQ2307A	-	acetyl-CoA C-acyltransferase
1263	 48.58	0	1554344..1554730	+	128	110668239	-	HQ2308A	-	hypothetical protein
1264	 44.62	-1	1554896..1555639	-	247	110668240	phaB	HQ2309A	-	3-oxoacyl-[acyl-carrier-protein] reductase (3-ketoacyl-acyl carrier protein reductase) PhaB
1265	 46.12	0	1555807..1557222	-	471	110668241	phaC	HQ2310A	-	Poly-beta-hydroxybutyrate polymerase polyhydroxyalkanoic acid synthase PhaC
1266	 49.55	0	1557219..1557773	-	184	110668242	-	HQ2311A	-	phbC-phbA intergenic region protein
1267	 49.25	0	1557952..1558416	-	154	110668243	-	HQ2312A	-	hypothetical protein
1268	 48.91	0	1558422..1558787	-	121	110668244	-	HQ2313A	-	hypothetical protein
1269	 48.08	0	1558909..1559586	+	225	110668245	maoC	HQ2315A	-	enoyl-CoA hydratase
1270	 46.83	0	1559676..1560431	+	251	110668246	-	HQ2316A	-	hypothetical protein
1271	 49.16	0	1561085..1563808	-	907	110668247	leuS	HQ2317A	-	leucyl-tRNA synthetase
1272	 53.33	+1	1566363..1566887	+	174	110668248	-	HQ2319A	-	transposase homolog (ISHnew96)
1273	 47.12	0	1569129..1569527	+	132	110668249	-	HQ2323A	-	hypothetical protein
48.79	MEAN

3.84	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.