IslandPathversion 1.0

IslandPath Analysis: Haloquadratum walsbyi DSM 16790



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 48.79 STD DEV: 3.84
Haloquadratum walsbyi DSM 16790, complete genome - 1..3132494
2610 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1135	 57.21	+2	1400751..1401173	-	140	110668111	-	HQ2172A	-	hypothetical protein
1136	 60.00	+2	1401241..1401675	-	144	110668112	-	HQ2173A	-	hypothetical protein
1137	 63.48	+2	1401684..1402217	-	177	110668113	-	HQ2174A	-	hypothetical protein
1138	 57.94	+2	1402367..1403008	-	213	110668114	-	HQ2175A	-	hypothetical protein
1139	 59.58	+2	1403243..1403482	+	79	110668115	-	HQ2176A	-	hypothetical protein
1140	 53.23	+1	1403523..1404884	-	453	110668116	-	HQ2177A	-	hypothetical protein
1141	 53.40	+1	1404871..1406280	-	469	110668117	rad25	HQ2178A	-	DNA repair helicase RAD25
1142	 51.08	0	1406345..1406716	-	123	110668118	-	HQ2179A	-	hypothetical protein
1143	 55.39	+1	1407223..1408206	+	327	110668119	-	HQ2180A	-	hypothetical protein
1144	 50.86	0	1408266..1408556	+	96	110668120	-	HQ2181A	-	hypothetical protein
1145	 50.57	0	1408549..1408722	+	57	110668121	-	HQ2182A	-	hypothetical protein
1146	 58.33	+2	1409095..1409442	-	115	110668122	-	HQ2183A	-	hypothetical protein
1147	 44.03	-1	1410746..1412044	-	432	110668123	dctM	HQ2184A	-	TRAP-type C4-dicarboxylate transport system,large permease component DctM (YiaN)
1148	 46.33	0	1412058..1412534	-	158	110668124	dctQ	HQ2185A	-	TRAP-type C4-dicarboxylate transport system,small permease component
1149	 47.73	0	1412554..1413678	-	374	110668125	dctP	HQ2186A	-	TRAP-type C4-dicarboxylate transport system,periplasmic component DctP (YiaO)
1150	 44.51	-1	1413885..1414403	+	172	110668126	-	HQ2187A	-	hypothetical protein
1151	 40.74	-2	1414532..1414666	-	44	110668127	-	HQ2188A	-	hypothetical protein
1152	 62.58	+2	1415269..1416246	+	325	110668128	sdt	HQ2189A	-	sodium-dependent transporter
1153	 52.75	+1	1416348..1416620	-	90	110668129	-	HQ2190A	-	transcriptional regulator
1154	 47.92	0	1416797..1417708	-	303	110668130	-	HQ2191A	-	acetamidase/formamidase family protein
1155	 51.49	0	1417857..1419161	+	434	110668131	livJ	HQ2192A	-	ABC-type branched-chain amino acid transport systems, substrate-binding protein
1156	 48.15	0	1419175..1419579	-	134	110668132	livF	HQ2193A	-	ABC-type branched-chain amino acid transport systems, ATP-binding protein II
1157	 41.40	-1	1419694..1419879	-	61	110668133	livF	HQ2194A	-	ABC-type branched-chain amino acid transport systems, ATP-binding protein II
1158	 47.55	0	1419876..1420670	-	264	110668134	livG	HQ2195A	-	ABC-type branched-chain amino acid transport systems, ATP-binding protein I
1159	 50.04	0	1420670..1421986	-	438	110668135	livM	HQ2196A	-	ABC-type branched-chain amino acid transport system, permease protein II
1160	 49.24	0	1421983..1423101	-	372	110668136	livH	HQ2197A	-	ABC-type branched-chain amino acid transport system, permease protein I
1161	 52.13	0	1423906..1424187	+	93	110668137	-	HQ2198A	-	homolog to transcription regulator
1162	 51.65	0	1424715..1424987	+	90	110668138	-	HQ2199A	-	hypothetical protein
1163	 46.38	0	1425602..1426996	-	464	110668139	-	HQ2201A	-	hypothetical protein
1164	 55.65	+1	1427580..1427933	-	117	110668140	-	HQ2202A	-	PemK-like growth inhibitor protein (MazF protein)
1165	 60.34	+2	1427930..1428166	-	78	110668141	-	HQ2203A	-	hypothetical protein
1166	 56.67	+2	1428801..1428980	+	59	110668142	-	HQ2204A	-	hypothetical protein
1167	 61.11	+2	1428977..1429192	+	71	110668143	-	HQ2205A	-	hypothetical protein
1168	 57.32	+2	1429189..1429434	+	81	110668144	-	HQ2206A	-	hypothetical protein
1169	 50.56	0	1430070..1431416	-	448	110668145	sqlE	HQ2207A	-	oxidoreductase
1170	 53.29	+1	1432045..1433307	+	420	110668146	-	HQ2208A	-	hypothetical protein
1171	 52.11	0	1433958..1434170	-	70	110668147	-	HQ2209A	-	hypothetical protein
1172	 52.16	0	1435237..1436553	-	438	110668148	narK	HQ2210A	-	nitrate/nitrite transporter
1173	 55.27	+1	1437133..1439220	-	695	110668149	narB	HQ2211A	-	nitrate reductase, catalytic subunit
1174	 53.15	+1	1439683..1441458	+	591	110668150	nirA	HQ2212A	-	ferredoxin--nitrite reductase
1175	 56.54	+2	1441591..1443714	+	707	110668151	narB	HQ2213A	-	nitrate reductase, catalytic subunit
1176	 49.65	0	1443736..1444017	+	93	110668152	-	HQ2214A	-	hypothetical protein
1177	 47.58	0	1444721..1445443	-	240	110668153	-	HQ2215A	-	hypothetical protein
1178	 44.57	-1	1445981..1447066	+	361	110668154	-	HQ2216A	-	hypothetical protein
1179	 43.93	-1	1447456..1448163	+	235	110668155	-	HQ2217A	-	hypothetical protein
1180	 54.11	+1	1449026..1449646	-	206	110668156	gufA	HQ2218A	-	divalent heavy-metal cations transporter
1181	 44.85	-1	1450116..1450523	+	135	110668157	-	HQ2219A	-	hypothetical protein
1182	 43.86	-1	1451383..1451724	-	113	110668158	-	HQ2220A	-	hypothetical protein
1183	 46.39	0	1451915..1452343	+	142	110668159	nikR	HQ2221A	-	putative nickel responsive regulator
1184	 47.75	0	1452513..1453580	-	355	110668160	-	HQ2222A	-	hypothetical protein
1185	 47.58	0	1454403..1455125	+	240	110668161	-	HQ2223A	-	hypothetical protein
1186	 57.58	+2	1456637..1456801	+	54	110668162	-	HQ2224A	-	hypothetical protein
1187	 52.69	+1	1457275..1457646	-	123	110668163	-	HQ2225A	-	transcription regulator
1188	 50.63	0	1458405..1459115	+	236	110668164	pncA	HQ2226A	-	isochorismatase
1189	 45.87	0	1459757..1460131	+	124	110668165	-	HQ2227A	-	hypothetical protein
1190	 52.33	0	1460338..1460853	+	171	110668166	-	HQ2228A	-	hypothetical protein
1191	 43.28	-1	1461238..1462323	+	361	110668167	-	HQ2229A	-	hypothetical protein
1192	 46.60	0	1462503..1462826	-	107	110668168	sugE	HQ2230A	-	small multidrug export protein
1193	 56.37	+1	1463309..1464541	+	410	110668169	-	HQ2231A	-	major facilitator superfamily transporter
1194	 49.23	0	1465132..1466496	+	454	110668170	-	HQ2232A	-	restriction system mrr-like protein
1195	 52.57	0	1466625..1468085	+	486	110668171	cat	HQ2233A	-	cationic amino acid transport protein
1196	 54.03	+1	1468178..1468897	+	239	110668172	-	HQ2234A	-	hypothetical protein
1197	 47.58	0	1468903..1469667	+	254	110668173	-	HQ2235A	-	hypothetical protein
1198	 51.17	0	1469920..1472223	-	767	110668174	metE	HQ2236A	-	5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase
1199	 56.02	+1	1473218..1474297	-	359	110668175	ocd	HQ2237A	-	ornithine cyclodeaminase
1200	 50.47	0	1474617..1475579	-	320	110668176	gufA	HQ2238A	-	divalent heavy-metal cations transporter
1201	 48.09	0	1475808..1475990	+	60	110668177	-	HQ2239A	-	hypothetical protein
1202	 46.92	0	1476441..1478288	-	615	110668178	hyuB	HQ2241A	-	N-methylhydantoinase B (ATP-hydrolyzing)
1203	 48.98	0	1478347..1480404	-	685	110668179	hyuA	HQ2242A	-	N-methylhydantoinase A (ATP-hydrolyzing)
1204	 48.37	0	1481158..1481403	-	81	110668180	-	HQ2243A	-	hypothetical protein
1205	 48.82	0	1481727..1482746	-	339	110668181	cysA	HQ2244A	-	ABC-type sulfate/molybdate transport systems,ATP-binding protein
1206	 46.02	0	1482747..1483763	-	338	110668182	cysT	HQ2245A	-	ABC-type sulfate/molybdate transport system,permease protein
1207	 48.13	0	1483760..1484773	-	337	110668183	cysU	HQ2246A	-	ABC-type sulfate/molybdate transport systems,permease protein
1208	 49.15	0	1484779..1485948	-	389	110668184	-	HQ2247A	-	sulfate/molybdate ABC transporter periplasmic substrate-binding protein
1209	 48.12	0	1486463..1487260	-	265	110668185	-	HQ2249A	-	hypothetical protein
1210	 46.33	0	1487597..1487773	+	58	110668186	-	HQ2250A	-	hypothetical protein
1211	 46.75	0	1487955..1488185	+	76	110668187	-	HQ2251A	-	hypothetical protein
1212	 46.95	0	1488975..1491560	-	861	110668188	cadA	HQ2252A	-	cadmium-transporting ATPase
1213	 45.26	0	1492093..1492419	-	108	110668189	-	HQ2253A	-	hypothetical protein
1214	 44.30	-1	1492698..1493153	+	151	110668190	-	HQ2254A	-	hypothetical protein
1215	 48.86	0	1493502..1496432	+	976	110668191	-	HQ2255A	-	hypothetical protein
1216	 49.03	0	1496429..1497148	+	239	110668192	-	HQ2256A	-	hypothetical protein
1217	 50.67	0	1497157..1498506	+	449	110668193	-	HQ2257A	-	hypothetical protein
1218	 49.45	0	1498503..1500059	+	518	110668194	-	HQ2258A	-	hypothetical protein
1219	 48.41	0	1500183..1501157	-	324	110668195	moxR	HQ2259A	-	MoxR-like ATPase
1220	 44.44	-1	1501671..1502039	-	122	110668196	-	HQ2260A	-	hypothetical protein
1221	 48.37	0	1502221..1502619	-	132	110668197	-	HQ2261A	-	hypothetical protein
1222	 48.40	0	1502667..1503197	-	176	110668198	-	HQ2262A	-	hypothetical protein
1223	 44.39	-1	1503197..1503847	-	216	110668199	-	HQ2263A	-	hypothetical protein
1224	 44.81	-1	1504347..1504808	+	153	110668200	-	HQ2264A	-	hypothetical protein
1225	 45.34	0	1504980..1505462	-	160	110668201	-	HQ2265A	-	pyridoxamine 5'-phosphate oxidase
1226	 52.78	+1	1505704..1505847	-	47	110668202	-	HQ2266A	-	periplasmic serine proteinase (fragment)
1227	 47.83	0	1506295..1506846	+	183	110668203	-	HQ2268A	-	hypothetical protein
1228	 49.21	0	1508228..1509298	-	356	110668204	-	HQ2269A	-	CBS domain-containing protein
1229	 49.87	0	1509408..1510199	-	263	110668205	nagD	HQ2270A	-	putative N-acetyl-glucosamine catabolism protein
1230	 58.42	+2	1510607..1512364	+	585	110668206	-	HQ2271A	-	ferredoxin domain-containing protein
1231	 49.00	0	1513504..1514256	-	250	110668207	-	HQ2273A	-	hypothetical protein
1232	 44.96	0	1514491..1515393	+	300	110668208	-	HQ2274A	-	hypothetical protein
1233	 49.95	0	1516225..1518114	+	629	110668209	dap2	HQ2276A	-	dipeptidyl aminopeptidases/acylaminoacyl-peptidases
1234	 49.81	0	1519249..1519509	+	86	110668210	-	HQ2277A	-	hypothetical protein
48.79	MEAN

3.84	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.