IslandPath Analysis: Haloquadratum walsbyi DSM 16790



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 48.79   STD DEV: 3.84
Haloquadratum walsbyi DSM 16790, complete genome - 1..3132494
2610 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1064	 54.65	+1	1322887..1323477	-	196	110668040	-	HQ2095A	-	hypothetical protein
1065	 52.43	0	1324537..1325913	-	458	110668041	uraA	HQ2096A	-	xanthine/uracil permeases
1066	 56.06	+1	1326351..1327076	+	241	110668042	-	HQ2097A	-	hypothetical protein
1067	 62.79	+2	1327295..1327423	-	42	110668043	-	HQ2098A	-	integrase (PhiCh1 Int1-like)
1068	 49.22	0	1328083..1328592	+	169	110668044	-	HQ2099A	-	hypothetical protein
1069	 52.34	0	1328781..1329143	-	120	110668045	-	HQ2100A	-	hypothetical protein
1070	 61.90	+2	1329588..1329986	+	132	110668046	-	HQ2101A	-	hypothetical protein
1071	 61.24	+2	1330001..1330387	+	128	110668047	-	HQ2102A	-	hypothetical protein
1072	 47.74	0	1330491..1330844	-	117	110668048	-	HQ2103A	-	hypothetical protein
1073	 48.40	0	1331682..1332212	+	176	110668049	-	HQ2104A	-	hypothetical protein
1074	 58.33	+2	1332428..1333135	+	235	110668050	-	HQ2105A	-	hypothetical protein
1075	 47.37	0	1333860..1334315	+	151	110668051	-	HQ2106A	-	hypothetical protein
1076	 52.59	0	1335173..1336081	+	302	110668052	-	HQ2107A	-	hypothetical protein
1077	 53.97	+1	1336297..1336737	+	146	110668053	-	HQ2108A	-	hypothetical protein
1078	 47.99	0	1337118..1337390	-	90	110668054	-	HQ2109A	-	hypothetical protein
1079	 48.01	0	1337749..1338075	-	108	110668055	-	HQ2110A	-	hypothetical protein
1080	 45.43	0	1339542..1339979	-	145	110668056	-	HQ2111A	-	hypothetical protein
1081	 52.80	+1	1341040..1342272	-	410	110668057	-	HQ2112A	-	hypothetical protein
1082	 56.49	+2	1342584..1343192	+	202	110668058	-	HQ2113A	-	hypothetical protein
1083	 49.49	0	1343774..1344262	-	162	110668059	-	HQ2114A	-	pentapeptide repeat-containing protein
1084	 45.43	0	1344712..1345050	-	112	110668060	-	HQ2115A	-	hypothetical protein
1085	 42.90	-1	1345329..1345673	-	114	110668061	-	HQ2116A	-	hypothetical protein
1086	 57.28	+2	1347051..1348520	+	489	110668062	-	HQ2117A	-	hypothetical protein
1087	 56.85	+2	1351161..1351832	+	223	110668063	ugpQ	HQ2118A	-	glycerophosphodiester phosphodiesterase
1088	 58.33	+2	1353480..1353839	+	119	110668064	-	HQ2121A	-	hypothetical protein
1089	 59.85	+2	1353836..1354099	+	87	110668065	-	HQ2122A	-	hypothetical protein
1090	 64.89	+2	1354253..1354870	+	205	110668066	-	HQ2123A	-	hypothetical protein
1091	 61.54	+2	1354870..1354986	+	38	110668067	-	HQ2124A	-	hypothetical protein
1092	 53.62	+1	1354987..1355469	-	160	110668068	-	HQ2125A	-	hypothetical protein
1093	 58.06	+2	1355473..1355925	-	150	110668069	-	HQ2126A	-	hypothetical protein
1094	 61.07	+2	1356235..1357593	+	452	110668070	chrA	HQ2127A	-	chromate transport protein
1095	 58.55	+2	1358300..1359100	+	266	110668071	-	HQ2128A	-	hypothetical protein
1096	 62.03	+2	1359250..1359594	+	114	110668072	-	HQ2129A	-	hypothetical protein
1097	 59.92	+2	1359961..1360479	-	172	110668073	-	HQ2130A	-	hypothetical protein
1098	 62.20	+2	1360480..1360770	-	96	110668074	-	HQ2131A	-	hypothetical protein
1099	 62.89	+2	1361093..1361383	+	96	110668075	-	HQ2132A	-	hypothetical protein
1100	 63.39	+2	1361383..1361718	+	111	110668076	-	HQ2133A	-	hypothetical protein
1101	 58.26	+2	1361803..1362135	+	110	110668077	-	HQ2134A	-	hypothetical protein
1102	 58.12	+2	1362132..1362599	+	155	110668078	-	HQ2135A	-	hypothetical protein
1103	 61.62	+2	1362699..1363055	+	118	110668079	-	HQ2136A	-	hypothetical protein
1104	 57.27	+2	1363065..1363394	+	109	110668080	-	HQ2137A	-	hypothetical protein
1105	 59.52	+2	1364523..1364900	+	125	110668081	-	HQ2138A	-	hypothetical protein
1106	 54.90	+1	1366040..1366396	+	118	110668082	-	HQ2140A	-	hypothetical protein
1107	 47.39	0	1366750..1369416	+	888	110668083	-	HQ2141A	-	signal-transducing histidine kinase/response regulator
1108	 50.48	0	1369688..1369897	+	69	110668084	-	HQ2142A	-	hypothetical protein
1109	 57.55	+2	1370117..1370533	-	138	110668085	-	HQ2143A	-	hypothetical protein
1110	 47.22	0	1372177..1373256	+	359	110668086	-	HQ2145A	-	hypothetical protein
1111	 50.48	0	1373914..1374018	+	34	110668087	-	HQ2146A	-	hypothetical protein
1112	 54.04	+1	1374531..1374926	+	131	110668088	-	HQ2147A	-	hypothetical protein
1113	 50.56	0	1376299..1378887	+	862	110668089	-	HQ2148A	-	hypothetical protein
1114	 51.10	0	1378884..1381781	+	965	110668090	uvrD	HQ2149A	-	DNA helicase II
1115	 52.99	+1	1381963..1382832	-	289	110668091	-	HQ2150A	-	putative protein-tyrosine-phosphatase
1116	 44.02	-1	1384314..1385258	-	314	110668092	-	HQ2151A	-	hypothetical protein
1117	 49.65	0	1385358..1385780	+	140	110668093	-	HQ2152A	-	hypothetical protein
1118	 45.39	0	1385993..1386415	+	140	110668094	-	HQ2153A	-	ATP-dependent Lon-type protease
1119	 53.63	+1	1386834..1388060	+	408	110668095	-	HQ2154A	-	IS1341-type transposase
1120	 61.48	+2	1388874..1389143	+	89	110668096	-	HQ2155A	-	transcriptional regulator
1121	 53.97	+1	1390308..1391000	-	230	110668097	-	HQ2157A	-	hypothetical protein
1122	 49.15	0	1391149..1391616	-	155	110668098	-	HQ2158A	-	hypothetical protein
1123	 49.36	0	1391622..1392326	-	234	110668099	-	HQ2159A	-	hypothetical protein
1124	 56.67	+2	1392388..1392837	-	149	110668100	-	HQ2160A	-	hypothetical protein
1125	 52.70	+1	1392968..1393189	-	73	110668101	-	HQ2161A	-	hypothetical protein
1126	 55.91	+1	1393239..1393517	-	92	110668102	-	HQ2162A	-	hypothetical protein
1127	 54.37	+1	1393580..1394059	-	159	110668103	-	HQ2163A	-	hypothetical protein
1128	 51.69	0	1395026..1396033	-	335	110668104	-	HQ2164A	-	hypothetical protein
1129	 48.42	0	1396061..1396723	-	220	110668105	-	HQ2165A	-	hypothetical protein
1130	 59.52	+2	1398026..1398949	+	307	110668106	-	HQ2167A	-	hypothetical protein
1131	 57.26	+2	1398946..1399179	+	77	110668107	-	HQ2168A	-	hypothetical protein
1132	 56.37	+1	1399333..1399866	+	177	110668108	-	HQ2169A	-	hypothetical protein
1133	 64.10	+2	1399939..1400289	-	116	110668109	-	HQ2170A	-	hypothetical protein
1134	 64.26	+2	1400267..1400557	-	96	110668110	-	HQ2171A	-	hypothetical protein
1135	 57.21	+2	1400751..1401173	-	140	110668111	-	HQ2172A	-	hypothetical protein
1136	 60.00	+2	1401241..1401675	-	144	110668112	-	HQ2173A	-	hypothetical protein
1137	 63.48	+2	1401684..1402217	-	177	110668113	-	HQ2174A	-	hypothetical protein
1138	 57.94	+2	1402367..1403008	-	213	110668114	-	HQ2175A	-	hypothetical protein
1139	 59.58	+2	1403243..1403482	+	79	110668115	-	HQ2176A	-	hypothetical protein
1140	 53.23	+1	1403523..1404884	-	453	110668116	-	HQ2177A	-	hypothetical protein
1141	 53.40	+1	1404871..1406280	-	469	110668117	rad25	HQ2178A	-	DNA repair helicase RAD25
1142	 51.08	0	1406345..1406716	-	123	110668118	-	HQ2179A	-	hypothetical protein
1143	 55.39	+1	1407223..1408206	+	327	110668119	-	HQ2180A	-	hypothetical protein
1144	 50.86	0	1408266..1408556	+	96	110668120	-	HQ2181A	-	hypothetical protein
1145	 50.57	0	1408549..1408722	+	57	110668121	-	HQ2182A	-	hypothetical protein
1146	 58.33	+2	1409095..1409442	-	115	110668122	-	HQ2183A	-	hypothetical protein
1147	 44.03	-1	1410746..1412044	-	432	110668123	dctM	HQ2184A	-	TRAP-type C4-dicarboxylate transport system,large permease component DctM (YiaN)
1148	 46.33	0	1412058..1412534	-	158	110668124	dctQ	HQ2185A	-	TRAP-type C4-dicarboxylate transport system,small permease component
1149	 47.73	0	1412554..1413678	-	374	110668125	dctP	HQ2186A	-	TRAP-type C4-dicarboxylate transport system,periplasmic component DctP (YiaO)
1150	 44.51	-1	1413885..1414403	+	172	110668126	-	HQ2187A	-	hypothetical protein
1151	 40.74	-2	1414532..1414666	-	44	110668127	-	HQ2188A	-	hypothetical protein
1152	 62.58	+2	1415269..1416246	+	325	110668128	sdt	HQ2189A	-	sodium-dependent transporter
1153	 52.75	+1	1416348..1416620	-	90	110668129	-	HQ2190A	-	transcriptional regulator
1154	 47.92	0	1416797..1417708	-	303	110668130	-	HQ2191A	-	acetamidase/formamidase family protein
1155	 51.49	0	1417857..1419161	+	434	110668131	livJ	HQ2192A	-	ABC-type branched-chain amino acid transport systems, substrate-binding protein
1156	 48.15	0	1419175..1419579	-	134	110668132	livF	HQ2193A	-	ABC-type branched-chain amino acid transport systems, ATP-binding protein II
1157	 41.40	-1	1419694..1419879	-	61	110668133	livF	HQ2194A	-	ABC-type branched-chain amino acid transport systems, ATP-binding protein II
1158	 47.55	0	1419876..1420670	-	264	110668134	livG	HQ2195A	-	ABC-type branched-chain amino acid transport systems, ATP-binding protein I
1159	 50.04	0	1420670..1421986	-	438	110668135	livM	HQ2196A	-	ABC-type branched-chain amino acid transport system, permease protein II
1160	 49.24	0	1421983..1423101	-	372	110668136	livH	HQ2197A	-	ABC-type branched-chain amino acid transport system, permease protein I
1161	 52.13	0	1423906..1424187	+	93	110668137	-	HQ2198A	-	homolog to transcription regulator
1162	 51.65	0	1424715..1424987	+	90	110668138	-	HQ2199A	-	hypothetical protein
1163	 46.38	0	1425602..1426996	-	464	110668139	-	HQ2201A	-	hypothetical protein
48.79	MEAN

3.84	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.