IslandPath Analysis: Haloquadratum walsbyi DSM 16790



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 48.79   STD DEV: 3.84
Haloquadratum walsbyi DSM 16790, complete genome - 1..3132494
2610 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1035	 52.49	0	1287546..1288610	+	354	110668011	serA	HQ2066A	-	phosphoglycerate dehydrogenase
1036	 47.38	0	1288822..1289241	-	139	110668012	-	HQ2067A	-	hypothetical protein
1037	 56.78	+2	1289698..1290324	+	208	110668013	-	HQ2068A	-	hypothetical protein
1038	 57.98	+2	1290364..1290720	+	118	110668014	-	HQ2069A	-	hypothetical protein
1039	 46.83	0	1290858..1291109	+	83	110668015	-	HQ2070A	-	hypothetical protein
1040	 51.08	0	1291268..1291639	-	123	110668016	-	HQ2071A	-	hypothetical protein
1041	 55.26	+1	1291769..1293118	-	449	110668017	-	HQ2072A	-	IS1341-type transposase
1042	 41.59	-1	1294080..1294406	+	108	110668018	-	HQ2073A	-	hypothetical protein
1043	 45.86	0	1294597..1295067	-	156	110668019	-	HQ2074A	-	hypothetical protein
1044	 44.66	-1	1295061..1297064	-	667	110668020	rad	HQ2075A	-	ATPase invovled in DNA repair
1045	 38.10	-2	1297064..1297231	-	55	110668021	-	HQ2076A	-	hypothetical protein
1046	 43.34	-1	1297541..1300507	-	988	110668022	-	HQ2077A	-	site-specific DNA-methyltransferase
1047	 43.39	-1	1300720..1302270	+	516	110668023	-	HQ2078A	-	site-specific DNA-methyltransferase
1048	 43.30	-1	1302340..1304355	+	671	110668024	-	HQ2079A	-	DNA repair helicase
1049	 39.24	-2	1304491..1306554	+	687	110668025	smc	HQ2080A	-	chromosome segregation protein
1050	 42.58	-1	1306551..1306961	+	136	110668026	-	HQ2081A	-	hypothetical protein
1051	 43.69	-1	1306980..1308080	+	366	110668027	-	HQ2082A	-	hypothetical protein
1052	 41.49	-1	1308202..1309218	+	338	110668028	-	HQ2083A	-	haloviral protein
1053	 50.00	0	1309908..1310237	-	109	110668029	-	HQ2084A	-	hypothetical protein
1054	 50.14	0	1310427..1310789	-	120	110668030	-	HQ2085A	-	hypothetical protein
1055	 46.26	0	1310987..1312819	-	610	110668031	-	HQ2086A	-	hypothetical protein
1056	 45.69	0	1312816..1316328	-	1170	110668032	-	HQ2087A	-	helicase family protein
1057	 46.52	0	1316321..1318489	-	722	110668033	-	HQ2088A	-	hypothetical protein
1058	 49.81	0	1319217..1319744	-	175	110668034	-	HQ2089A	-	hypothetical protein
1059	 53.33	+1	1319775..1320164	+	129	110668035	-	HQ2090A	-	hypothetical protein
1060	 51.02	0	1320228..1320815	+	195	110668036	-	HQ2091A	-	hypothetical protein
1061	 54.55	+1	1321023..1321253	+	76	110668037	-	HQ2092A	-	hypothetical protein
1062	 51.52	0	1321270..1321764	+	164	110668038	-	HQ2093A	-	hypothetical protein
1063	 53.07	+1	1322014..1322631	-	205	110668039	-	HQ2094A	-	hypothetical protein
1064	 54.65	+1	1322887..1323477	-	196	110668040	-	HQ2095A	-	hypothetical protein
1065	 52.43	0	1324537..1325913	-	458	110668041	uraA	HQ2096A	-	xanthine/uracil permeases
1066	 56.06	+1	1326351..1327076	+	241	110668042	-	HQ2097A	-	hypothetical protein
1067	 62.79	+2	1327295..1327423	-	42	110668043	-	HQ2098A	-	integrase (PhiCh1 Int1-like)
1068	 49.22	0	1328083..1328592	+	169	110668044	-	HQ2099A	-	hypothetical protein
1069	 52.34	0	1328781..1329143	-	120	110668045	-	HQ2100A	-	hypothetical protein
1070	 61.90	+2	1329588..1329986	+	132	110668046	-	HQ2101A	-	hypothetical protein
1071	 61.24	+2	1330001..1330387	+	128	110668047	-	HQ2102A	-	hypothetical protein
1072	 47.74	0	1330491..1330844	-	117	110668048	-	HQ2103A	-	hypothetical protein
1073	 48.40	0	1331682..1332212	+	176	110668049	-	HQ2104A	-	hypothetical protein
1074	 58.33	+2	1332428..1333135	+	235	110668050	-	HQ2105A	-	hypothetical protein
1075	 47.37	0	1333860..1334315	+	151	110668051	-	HQ2106A	-	hypothetical protein
1076	 52.59	0	1335173..1336081	+	302	110668052	-	HQ2107A	-	hypothetical protein
1077	 53.97	+1	1336297..1336737	+	146	110668053	-	HQ2108A	-	hypothetical protein
1078	 47.99	0	1337118..1337390	-	90	110668054	-	HQ2109A	-	hypothetical protein
1079	 48.01	0	1337749..1338075	-	108	110668055	-	HQ2110A	-	hypothetical protein
1080	 45.43	0	1339542..1339979	-	145	110668056	-	HQ2111A	-	hypothetical protein
1081	 52.80	+1	1341040..1342272	-	410	110668057	-	HQ2112A	-	hypothetical protein
1082	 56.49	+2	1342584..1343192	+	202	110668058	-	HQ2113A	-	hypothetical protein
1083	 49.49	0	1343774..1344262	-	162	110668059	-	HQ2114A	-	pentapeptide repeat-containing protein
1084	 45.43	0	1344712..1345050	-	112	110668060	-	HQ2115A	-	hypothetical protein
1085	 42.90	-1	1345329..1345673	-	114	110668061	-	HQ2116A	-	hypothetical protein
1086	 57.28	+2	1347051..1348520	+	489	110668062	-	HQ2117A	-	hypothetical protein
1087	 56.85	+2	1351161..1351832	+	223	110668063	ugpQ	HQ2118A	-	glycerophosphodiester phosphodiesterase
1088	 58.33	+2	1353480..1353839	+	119	110668064	-	HQ2121A	-	hypothetical protein
1089	 59.85	+2	1353836..1354099	+	87	110668065	-	HQ2122A	-	hypothetical protein
1090	 64.89	+2	1354253..1354870	+	205	110668066	-	HQ2123A	-	hypothetical protein
1091	 61.54	+2	1354870..1354986	+	38	110668067	-	HQ2124A	-	hypothetical protein
1092	 53.62	+1	1354987..1355469	-	160	110668068	-	HQ2125A	-	hypothetical protein
1093	 58.06	+2	1355473..1355925	-	150	110668069	-	HQ2126A	-	hypothetical protein
1094	 61.07	+2	1356235..1357593	+	452	110668070	chrA	HQ2127A	-	chromate transport protein
1095	 58.55	+2	1358300..1359100	+	266	110668071	-	HQ2128A	-	hypothetical protein
1096	 62.03	+2	1359250..1359594	+	114	110668072	-	HQ2129A	-	hypothetical protein
1097	 59.92	+2	1359961..1360479	-	172	110668073	-	HQ2130A	-	hypothetical protein
1098	 62.20	+2	1360480..1360770	-	96	110668074	-	HQ2131A	-	hypothetical protein
1099	 62.89	+2	1361093..1361383	+	96	110668075	-	HQ2132A	-	hypothetical protein
1100	 63.39	+2	1361383..1361718	+	111	110668076	-	HQ2133A	-	hypothetical protein
1101	 58.26	+2	1361803..1362135	+	110	110668077	-	HQ2134A	-	hypothetical protein
1102	 58.12	+2	1362132..1362599	+	155	110668078	-	HQ2135A	-	hypothetical protein
1103	 61.62	+2	1362699..1363055	+	118	110668079	-	HQ2136A	-	hypothetical protein
1104	 57.27	+2	1363065..1363394	+	109	110668080	-	HQ2137A	-	hypothetical protein
1105	 59.52	+2	1364523..1364900	+	125	110668081	-	HQ2138A	-	hypothetical protein
1106	 54.90	+1	1366040..1366396	+	118	110668082	-	HQ2140A	-	hypothetical protein
1107	 47.39	0	1366750..1369416	+	888	110668083	-	HQ2141A	-	signal-transducing histidine kinase/response regulator
1108	 50.48	0	1369688..1369897	+	69	110668084	-	HQ2142A	-	hypothetical protein
1109	 57.55	+2	1370117..1370533	-	138	110668085	-	HQ2143A	-	hypothetical protein
1110	 47.22	0	1372177..1373256	+	359	110668086	-	HQ2145A	-	hypothetical protein
1111	 50.48	0	1373914..1374018	+	34	110668087	-	HQ2146A	-	hypothetical protein
1112	 54.04	+1	1374531..1374926	+	131	110668088	-	HQ2147A	-	hypothetical protein
1113	 50.56	0	1376299..1378887	+	862	110668089	-	HQ2148A	-	hypothetical protein
1114	 51.10	0	1378884..1381781	+	965	110668090	uvrD	HQ2149A	-	DNA helicase II
1115	 52.99	+1	1381963..1382832	-	289	110668091	-	HQ2150A	-	putative protein-tyrosine-phosphatase
1116	 44.02	-1	1384314..1385258	-	314	110668092	-	HQ2151A	-	hypothetical protein
1117	 49.65	0	1385358..1385780	+	140	110668093	-	HQ2152A	-	hypothetical protein
1118	 45.39	0	1385993..1386415	+	140	110668094	-	HQ2153A	-	ATP-dependent Lon-type protease
1119	 53.63	+1	1386834..1388060	+	408	110668095	-	HQ2154A	-	IS1341-type transposase
1120	 61.48	+2	1388874..1389143	+	89	110668096	-	HQ2155A	-	transcriptional regulator
1121	 53.97	+1	1390308..1391000	-	230	110668097	-	HQ2157A	-	hypothetical protein
1122	 49.15	0	1391149..1391616	-	155	110668098	-	HQ2158A	-	hypothetical protein
1123	 49.36	0	1391622..1392326	-	234	110668099	-	HQ2159A	-	hypothetical protein
1124	 56.67	+2	1392388..1392837	-	149	110668100	-	HQ2160A	-	hypothetical protein
1125	 52.70	+1	1392968..1393189	-	73	110668101	-	HQ2161A	-	hypothetical protein
1126	 55.91	+1	1393239..1393517	-	92	110668102	-	HQ2162A	-	hypothetical protein
1127	 54.37	+1	1393580..1394059	-	159	110668103	-	HQ2163A	-	hypothetical protein
1128	 51.69	0	1395026..1396033	-	335	110668104	-	HQ2164A	-	hypothetical protein
1129	 48.42	0	1396061..1396723	-	220	110668105	-	HQ2165A	-	hypothetical protein
1130	 59.52	+2	1398026..1398949	+	307	110668106	-	HQ2167A	-	hypothetical protein
1131	 57.26	+2	1398946..1399179	+	77	110668107	-	HQ2168A	-	hypothetical protein
1132	 56.37	+1	1399333..1399866	+	177	110668108	-	HQ2169A	-	hypothetical protein
1133	 64.10	+2	1399939..1400289	-	116	110668109	-	HQ2170A	-	hypothetical protein
1134	 64.26	+2	1400267..1400557	-	96	110668110	-	HQ2171A	-	hypothetical protein
48.79	MEAN

3.84	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.