IslandPath Analysis: Haloquadratum walsbyi DSM 16790



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 48.79   STD DEV: 3.84
Haloquadratum walsbyi DSM 16790, complete genome - 1..3132494
2610 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
986	 50.38	0	1227790..1229109	-	439	110667962	ywaD	HQ2014A	-	peptidase
987	 40.00	-2	1229220..1229744	+	174	110667963	-	HQ2015A	-	tRNA splicing protein, cyclic phosphodiesterase
988	 49.09	0	1229891..1230055	-	54	110667964	-	HQ2016A	-	hypothetical protein
989	 49.34	0	1230382..1231974	+	530	110667965	-	HQ2017A	-	hypothetical protein
990	 49.86	0	1231971..1232696	+	241	110667966	salX	HQ2018A	-	peptide ABC transporter ATP-binding protein
991	 48.28	0	1232725..1233828	+	367	110667967	salY	HQ2019A	-	peptide ABC transporter permease
992	 48.07	0	1234053..1235477	-	474	110667968	-	HQ2020A	-	beta,beta-carotene 9',10'-dioxygenase 2
993	 49.29	0	1237785..1238204	-	139	110667969	uspA	HQ2022A	-	universal stress protein
994	 50.69	0	1238500..1239957	+	485	110667970	mntH	HQ2023A	-	manganese transporter NRAMP
995	 52.19	0	1240690..1242057	-	455	110667971	ppsA2	HQ2024A	-	pyruvate, water dikinase (phosphoenolpyruvate synthase)
996	 51.46	0	1242068..1243060	-	330	110667972	gapB	HQ2025A	-	glyceraldehyde-3-phosphate dehydrogenase
997	 48.04	0	1244425..1245138	+	237	110667973	-	HQ2026A	-	phosphotransferase domain-containing protein
998	 42.66	-1	1245338..1247224	+	628	110667974	-	HQ2027A	-	ATP/GTP-binding protein
999	 47.84	0	1247592..1247984	-	130	110667975	nudF	HQ2028A	-	ADP-ribose pyrophosphatase
1000	 44.35	-1	1248221..1248565	+	114	110667976	cad	HQ2029A	-	pterin-4a-carbinolamine dehydratase
1001	 56.64	+2	1248719..1249546	-	275	110667977	-	HQ2030A	-	ISH9-type transposase
1002	 47.02	0	1250232..1252466	-	744	110667978	amyA	HQ2031A	-	alpha amylase
1003	 45.54	0	1252820..1253032	-	70	110667979	xseAs	HQ2032A	-	exonuclease VII small subunit
1004	 44.19	-1	1253029..1254207	-	392	110667980	xseAl	HQ2033A	-	exodeoxyribonuclease VII large subunit
1005	 47.69	0	1254523..1255539	+	338	110667981	-	HQ2034A	-	hypothetical protein
1006	 47.70	0	1255536..1256579	+	347	110667982	-	HQ2035A	-	mandelate racemase/muconate lactonizing enzyme family protein
1007	 45.14	0	1257198..1258112	+	304	110667983	elaC	HQ2036A	-	ribonuclease Z (RNase Z) (tRNA 3 endonuclease)
1008	 48.11	0	1258376..1260148	-	590	110667984	-	HQ2037A	-	hypothetical protein
1009	 47.74	0	1260394..1261323	-	309	110667985	cysA	HQ2038A	-	thiosulfate sulfurtransferase
1010	 49.07	0	1261454..1261828	-	124	110667986	-	HQ2039A	-	hypothetical protein
1011	 48.02	0	1261925..1262884	-	319	110667987	sppA	HQ2040A	-	signal peptide peptidase
1012	 47.35	0	1264711..1265466	+	251	110667988	cinA	HQ2043A	-	CinA-like domain-containing protein
1013	 45.19	0	1265675..1266610	+	311	110667989	-	HQ2044A	-	hypothetical protein
1014	 42.70	-1	1266813..1267538	-	241	110667990	-	HQ2045A	-	phosphoesterase
1015	 45.62	0	1267848..1268441	-	197	110667991	cynT	HQ2046A	-	carbonic anhydrase
1016	 51.82	0	1268610..1268912	-	100	110667992	trzA	HQ2047A	-	Atrazine chlorohydrolase
1017	 49.73	0	1268958..1269140	-	60	110667993	trzA	HQ2048A	-	N-ethylammeline chlorohydrolase (S-triazine hydrolase )
1018	 49.21	0	1269425..1270759	+	444	110667994	guaD	HQ2049A	-	N-ethylammeline chlorohydrolase
1019	 45.05	0	1270976..1271521	+	181	110667995	apt	HQ2050A	-	adenine phosphoribosyltransferase
1020	 56.03	+1	1272280..1273605	+	441	110667996	-	HQ2051A	-	IS1341-type transposase
1021	 50.36	0	1273688..1274932	-	414	110667997	pitA	HQ2052A	-	phosphate permease-like protein
1022	 53.95	+1	1275420..1276229	-	269	110667998	-	HQ2053A	-	signal-transducing histidine kinase/response regulator
1023	 54.30	+1	1276307..1277155	-	282	110667999	-	HQ2054A	-	signal-transducing histidine kinase
1024	 48.76	0	1277657..1278019	+	120	110668000	-	HQ2055A	-	hypothetical protein
1025	 53.49	+1	1279161..1279676	+	171	110668001	-	HQ2056A	-	hypothetical protein
1026	 48.21	0	1281026..1281415	-	129	110668002	-	HQ2057A	-	hypothetical protein
1027	 46.02	0	1281749..1282339	+	196	110668003	-	HQ2058A	-	hypothetical protein
1028	 46.50	0	1282509..1283123	+	204	110668004	-	HQ2059A	-	hypothetical protein
1029	 43.37	-1	1283490..1283768	+	92	110668005	-	HQ2060A	-	hypothetical protein
1030	 51.79	0	1284055..1284249	-	64	110668006	-	HQ2061A	-	hypothetical protein
1031	 56.05	+1	1284236..1284970	-	244	110668007	ldcA	HQ2062A	-	LD-carboxypeptidase
1032	 55.32	+1	1284995..1285135	-	46	110668008	-	HQ2063A	-	hypothetical protein
1033	 49.53	0	1285457..1286098	-	213	110668009	rhtB	HQ2064A	-	threonine/homoserine/homoserine lactone efflux protein
1034	 52.69	+1	1286435..1286713	-	92	110668010	-	HQ2065A	-	hypothetical protein
1035	 52.49	0	1287546..1288610	+	354	110668011	serA	HQ2066A	-	phosphoglycerate dehydrogenase
1036	 47.38	0	1288822..1289241	-	139	110668012	-	HQ2067A	-	hypothetical protein
1037	 56.78	+2	1289698..1290324	+	208	110668013	-	HQ2068A	-	hypothetical protein
1038	 57.98	+2	1290364..1290720	+	118	110668014	-	HQ2069A	-	hypothetical protein
1039	 46.83	0	1290858..1291109	+	83	110668015	-	HQ2070A	-	hypothetical protein
1040	 51.08	0	1291268..1291639	-	123	110668016	-	HQ2071A	-	hypothetical protein
1041	 55.26	+1	1291769..1293118	-	449	110668017	-	HQ2072A	-	IS1341-type transposase
1042	 41.59	-1	1294080..1294406	+	108	110668018	-	HQ2073A	-	hypothetical protein
1043	 45.86	0	1294597..1295067	-	156	110668019	-	HQ2074A	-	hypothetical protein
1044	 44.66	-1	1295061..1297064	-	667	110668020	rad	HQ2075A	-	ATPase invovled in DNA repair
1045	 38.10	-2	1297064..1297231	-	55	110668021	-	HQ2076A	-	hypothetical protein
1046	 43.34	-1	1297541..1300507	-	988	110668022	-	HQ2077A	-	site-specific DNA-methyltransferase
1047	 43.39	-1	1300720..1302270	+	516	110668023	-	HQ2078A	-	site-specific DNA-methyltransferase
1048	 43.30	-1	1302340..1304355	+	671	110668024	-	HQ2079A	-	DNA repair helicase
1049	 39.24	-2	1304491..1306554	+	687	110668025	smc	HQ2080A	-	chromosome segregation protein
1050	 42.58	-1	1306551..1306961	+	136	110668026	-	HQ2081A	-	hypothetical protein
1051	 43.69	-1	1306980..1308080	+	366	110668027	-	HQ2082A	-	hypothetical protein
1052	 41.49	-1	1308202..1309218	+	338	110668028	-	HQ2083A	-	haloviral protein
1053	 50.00	0	1309908..1310237	-	109	110668029	-	HQ2084A	-	hypothetical protein
1054	 50.14	0	1310427..1310789	-	120	110668030	-	HQ2085A	-	hypothetical protein
1055	 46.26	0	1310987..1312819	-	610	110668031	-	HQ2086A	-	hypothetical protein
1056	 45.69	0	1312816..1316328	-	1170	110668032	-	HQ2087A	-	helicase family protein
1057	 46.52	0	1316321..1318489	-	722	110668033	-	HQ2088A	-	hypothetical protein
1058	 49.81	0	1319217..1319744	-	175	110668034	-	HQ2089A	-	hypothetical protein
1059	 53.33	+1	1319775..1320164	+	129	110668035	-	HQ2090A	-	hypothetical protein
1060	 51.02	0	1320228..1320815	+	195	110668036	-	HQ2091A	-	hypothetical protein
1061	 54.55	+1	1321023..1321253	+	76	110668037	-	HQ2092A	-	hypothetical protein
1062	 51.52	0	1321270..1321764	+	164	110668038	-	HQ2093A	-	hypothetical protein
1063	 53.07	+1	1322014..1322631	-	205	110668039	-	HQ2094A	-	hypothetical protein
1064	 54.65	+1	1322887..1323477	-	196	110668040	-	HQ2095A	-	hypothetical protein
1065	 52.43	0	1324537..1325913	-	458	110668041	uraA	HQ2096A	-	xanthine/uracil permeases
1066	 56.06	+1	1326351..1327076	+	241	110668042	-	HQ2097A	-	hypothetical protein
1067	 62.79	+2	1327295..1327423	-	42	110668043	-	HQ2098A	-	integrase (PhiCh1 Int1-like)
1068	 49.22	0	1328083..1328592	+	169	110668044	-	HQ2099A	-	hypothetical protein
1069	 52.34	0	1328781..1329143	-	120	110668045	-	HQ2100A	-	hypothetical protein
1070	 61.90	+2	1329588..1329986	+	132	110668046	-	HQ2101A	-	hypothetical protein
1071	 61.24	+2	1330001..1330387	+	128	110668047	-	HQ2102A	-	hypothetical protein
1072	 47.74	0	1330491..1330844	-	117	110668048	-	HQ2103A	-	hypothetical protein
1073	 48.40	0	1331682..1332212	+	176	110668049	-	HQ2104A	-	hypothetical protein
1074	 58.33	+2	1332428..1333135	+	235	110668050	-	HQ2105A	-	hypothetical protein
1075	 47.37	0	1333860..1334315	+	151	110668051	-	HQ2106A	-	hypothetical protein
1076	 52.59	0	1335173..1336081	+	302	110668052	-	HQ2107A	-	hypothetical protein
1077	 53.97	+1	1336297..1336737	+	146	110668053	-	HQ2108A	-	hypothetical protein
1078	 47.99	0	1337118..1337390	-	90	110668054	-	HQ2109A	-	hypothetical protein
1079	 48.01	0	1337749..1338075	-	108	110668055	-	HQ2110A	-	hypothetical protein
1080	 45.43	0	1339542..1339979	-	145	110668056	-	HQ2111A	-	hypothetical protein
1081	 52.80	+1	1341040..1342272	-	410	110668057	-	HQ2112A	-	hypothetical protein
1082	 56.49	+2	1342584..1343192	+	202	110668058	-	HQ2113A	-	hypothetical protein
1083	 49.49	0	1343774..1344262	-	162	110668059	-	HQ2114A	-	pentapeptide repeat-containing protein
1084	 45.43	0	1344712..1345050	-	112	110668060	-	HQ2115A	-	hypothetical protein
1085	 42.90	-1	1345329..1345673	-	114	110668061	-	HQ2116A	-	hypothetical protein
48.79	MEAN

3.84	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.