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Haemophilus somnus 129PT, complete genome - 1..2007700 1792 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 50 40.03 0 53491..55044 - 517 113460198 - HS_0049 - autoinducer-2 (AI-2) kinase 51 40.52 0 55098..56057 - 319 113460199 - HS_0050 - sorbitol operon transcriptional regulator 52 39.10 0 56274..57782 + 502 113460200 ego HS_0051 - ABC transporter, ATP-binding, sugar transport 53 37.34 0 57791..58789 + 332 113460201 - HS_0052 - ABC transporter, permease, sugar transport 54 40.55 0 58786..59769 + 327 113460202 - HS_0053 - ABC transporter, permease, sugar transport 55 40.10 0 59882..60901 + 339 113460203 - HS_0054 - ABC transporter, solute-binding, sugar transport 56 41.52 +1 60920..61798 + 292 113460204 - HS_0055 - aldolase 57 34.32 0 61864..62166 + 100 113460205 - HS_0056 - autoinducer-2 (AI-2) modifying protein LsrG 58 34.74 0 62159..62869 + 236 113460206 rpe HS_0057 - ribulose-phosphate 3-epimerase 59 41.03 +1 63132..63443 + 103 113460207 rpsJ HS_0058 - SSU ribosomal protein S10P 60 39.71 0 63460..64086 + 208 113460208 rplC HS_0059 - 50S ribosomal protein L3 61 41.46 +1 64102..64704 + 200 113460209 rplD HS_0060 - 50S ribosomal protein L4 62 37.58 0 64701..65006 + 101 113460210 rplW HS_0061 - 50S ribosomal protein L23 63 42.46 +1 65027..65848 + 273 113460211 rplB HS_0062 - 50S ribosomal protein L2 64 44.57 +2 65875..66150 + 91 113460212 rpsS HS_0063 - 30S ribosomal protein S19 65 41.14 +1 66161..66493 + 110 113460213 rplV HS_0064 - 50S ribosomal protein L22 66 42.37 +1 66510..67217 + 235 113460214 rpsC HS_0065 - 30S ribosomal protein S3 67 42.34 +1 67231..67641 + 136 113460215 rplP HS_0066 - 50S ribosomal protein L16 68 41.67 +1 67641..67832 + 63 113460216 rpmC HS_0067 - 50S ribosomal protein L29 69 38.43 0 67832..68086 + 84 113460217 rpsQ HS_0068 - SSU ribosomal protein S17P 70 39.74 0 68283..70889 + 868 113460218 irp HS_0069 - iron-regulated outer membrane protein 71 43.28 +1 71086..71457 + 123 113460219 rplN HS_0070 - 50S ribosomal protein L14 72 35.58 0 71470..71781 + 103 113460220 rplX HS_0071 - 50S ribosomal protein L24 73 40.56 0 71799..72338 + 179 113460221 rplE HS_0072 - 50S ribosomal protein L5 74 42.16 +1 72350..72655 + 101 113460222 rpsN HS_0073 - SSU ribosomal protein S14P 75 41.48 +1 72692..73084 + 130 113460223 rpsH HS_0074 - 30S ribosomal protein S8 76 41.01 +1 73101..73634 + 177 113460224 rplF HS_0075 - 50S ribosomal protein L6 77 42.94 +1 73648..74001 + 117 113460225 rplR HS_0076 - 50S ribosomal protein L18 78 43.51 +1 74017..74517 + 166 113460226 rpsE HS_0077 - 30S ribosomal protein S5 79 37.70 0 74521..74703 + 60 113460227 rpmD HS_0078 - 50S ribosomal protein L30 80 41.84 +1 74708..75142 + 144 113460228 rplO HS_0079 - 50S ribosomal protein L15 81 36.35 0 75150..76475 + 441 113460229 secY HS_0080 - preprotein translocase subunit SecY 82 37.72 0 76503..76616 + 37 113461930 rpmJ HS_0080a - 50S ribosomal protein L36 83 42.86 +1 76760..77116 + 118 113460230 rpsM HS_0081 - 30S ribosomal protein S13 84 43.85 +1 77132..77521 + 129 113460231 rpsK HS_0082 - 30S ribosomal protein S11 85 40.26 0 77551..78171 + 206 113460232 rpsD HS_0083 - 30S ribosomal protein S4 86 40.10 0 78204..79193 + 329 113460233 rpoA HS_0084 - DNA-directed RNA polymerase subunit alpha 87 41.09 +1 79235..79621 + 128 113460234 rplQ HS_0085 - 50S ribosomal protein L17 88 34.35 0 79692..80378 - 228 113460235 - HS_0086 - hypothetical protein 89 33.72 -1 80383..81660 - 425 113460236 nadR HS_0087 - nicotinamide-nucleotide adenylyltransferase 90 30.58 -1 81736..82026 - 96 113460237 - HS_0088 - hypothetical protein 91 43.04 +1 82323..82961 + 212 113460238 ribB HS_0089 - 3,4-dihydroxy-2-butanone 4-phosphate synthase 92 42.49 +1 83118..83783 - 221 113460239 thiE HS_0090 - thiamine-phosphate pyrophosphorylase 93 41.70 +1 83783..84595 - 270 113460240 thiD HS_0091 - phosphomethylpyrimidine kinase 94 41.20 +1 84588..85388 - 266 113460241 thiM HS_0092 - hydroxyethylthiazole kinase 95 37.44 0 85961..86569 + 202 113460242 recO HS_0093 - DNA repair protein RecO 96 37.05 0 86590..87909 + 439 113460243 rumA HS_0094 - 23S rRNA 5-methyluridine methyltransferase 97 37.98 0 87921..90158 + 745 113460244 relA HS_0095 - GTP diphosphokinase (GTP pyrophosphokinase) 98 36.41 0 90183..90539 + 118 113460245 dgkA HS_0096 - diacylglycerol kinase 99 28.29 -2 92709..92966 + 85 113460246 - HS_0099 - hypothetical protein 100 27.78 -2 93052..93987 + 311 113460247 - HS_0100 - transcriptional regulator 101 29.46 -2 94032..94934 + 300 113460248 - HS_0101 - hypothetical protein 102 29.33 -2 95537..95761 + 74 113460249 - HS_0103 - hypothetical protein 103 42.07 +1 95721..96155 + 144 113460250 - HS_0104 - hypothetical protein 104 44.25 +2 96182..97399 + 405 113460251 fabF HS_0105 - 3-oxoacyl-[acyl-carrier-protein] synthase (beta-ketoacyl-ACP synthase) 105 41.28 +1 97401..97853 + 150 113460252 - HS_0106 - dehydratase 106 46.50 +2 97853..98581 + 242 113460253 fabG HS_0107 - 3-ketoacyl-(acyl-carrier-protein) reductase 107 44.23 +2 98654..99892 + 412 113460254 fab HS_0108 - 3-oxoacyl-[acyl-carrier-protein] synthase II 108 42.50 +1 100060..100812 + 250 113460255 - HS_0109 - hypothetical protein 109 40.16 0 100788..101549 + 253 113460256 plsC HS_0110 - 1-acyl-sn-glycerol-3-phosphate acyltransferase 110 39.15 0 101553..101810 + 85 113460257 acp HS_0111 - acyl carrier protein 111 36.14 0 101826..102074 + 82 113460258 acp HS_0112 - acyl carrier protein 112 38.85 0 102135..102515 + 126 113460259 - HS_0113 - 3-hydroxymyristoyl/3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase 113 42.30 +1 102625..103059 + 144 113460260 - HS_0114 - hypothetical protein 114 42.06 +1 103052..104335 + 427 113460261 - HS_0115 - acyl-coenzyme A synthetase-related protein 115 39.09 0 104332..105060 + 242 113460262 - HS_0116 - glycosyl transferase, group 2 family protein 116 40.50 0 105057..105977 + 306 113460263 - HS_0117 - acyltransferase 117 38.03 0 105959..106426 + 155 113460264 - HS_0118 - hypothetical protein 118 38.06 0 106506..106949 + 147 113460265 - HS_0119 - thioesterase 119 34.86 0 106960..107547 + 195 113460266 - HS_0120 - hypothetical protein 120 37.61 0 107556..109847 + 763 113460267 - HS_0121 - hypothetical protein 121 37.23 0 109988..111220 - 410 113460268 serA HS_0122 - D-3-phosphoglycerate dehydrogenase 122 37.73 0 111246..111905 - 219 113460269 rpiA HS_0123 - ribose-5-phosphate isomerase A 123 36.30 0 112001..113179 - 392 113460270 - HS_0124 - coproporphyrinogen III oxidase 124 40.03 0 113179..113775 - 198 113460271 - HS_0125 - putative deoxyribonucleotide triphosphate pyrophosphatase 125 36.01 0 113965..114300 - 111 113460272 comEA HS_0126 - ComE operon protein (competence protein) 126 40.26 0 114522..114911 - 129 113460273 - HS_0127 - translation initiation inhibitor (endoribonuclease L-PSP) 127 32.65 -1 114972..115553 - 193 113460274 - HS_0128 - hypothetical protein 128 32.34 -1 115702..116709 - 335 113460275 pabB HS_0129 - para-aminobenzoate synthase component I 129 34.74 0 116766..117335 + 189 113460276 trpG HS_0130 - para-aminobenzoate synthase component II 130 32.92 -1 117488..117967 + 159 113460277 - HS_0131 - DNA-binding stress protein 131 39.07 0 118067..119425 - 452 113460278 trmE HS_0132 - tRNA modification GTPase TrmE 132 38.50 0 119511..121136 - 541 113460279 oxaA HS_0133 - putative inner membrane protein translocase component YidC 133 37.93 0 121136..121396 - 86 113460280 - HS_0134 - hypothetical protein 134 37.22 0 121360..121719 - 119 113460281 rnpA HS_0135 - ribonuclease P 135 42.96 +1 121734..121868 - 44 113461931 rpmH HS_0135a - 50S ribosomal protein L34 136 37.16 0 122211..123569 + 452 113460282 dnaA HS_0136 - chromosomal replication initiation protein 137 37.06 0 123581..124681 + 366 113460283 dnaN HS_0137 - DNA polymerase III subunit beta 138 36.86 0 124685..125761 + 358 113460284 recF HS_0138 - recombination protein F 139 36.59 0 125818..126462 - 214 113460285 crp HS_0139 - cAMP-regulatory protein 140 30.83 -1 126475..126714 - 79 113460286 - HS_0140 - hypothetical protein 141 36.21 0 126734..127393 - 219 113460287 slmA HS_0141 - nucleoid occlusion protein 142 36.84 0 127393..127848 - 151 113460288 dut HS_0142 - deoxyuridine 5'-triphosphate nucleotidohydrolase 143 38.96 0 127845..129071 - 408 113460289 coaBC HS_0143 - bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase 144 33.93 0 129244..129912 + 222 113460290 radC HS_0144 - DNA repair protein RadC 145 43.88 +1 130133..130369 + 78 113460291 rpmB HS_0145 - 50S ribosomal protein L28 146 33.92 0 130381..130551 + 56 113461932 rpmG HS_0145a - 50S ribosomal protein L33 147 36.41 0 130656..131468 + 270 113460292 mutM HS_0146 - formamidopyrimidine-DNA glycosylase 148 39.77 0 131560..133236 + 558 113460293 ilvG HS_0147 - acetolactate synthase 2 catalytic subunit 149 33.79 0 133240..133458 + 72 113460294 ilvM HS_0148 - acetolactate synthase 2 regulatory subunit 37.21 MEAN 3.48 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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