IslandPath Analysis: Haemophilus somnus 129PT



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 37.21   STD DEV: 3.48
Haemophilus somnus 129PT, complete genome - 1..2007700
1792 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
819	 32.36	-1	888919..889533	-	204	113460957	lolA	HS_0814	-	outer-membrane lipoprotein carrier protein
820	 33.09	-1	889755..890168	+	137	113460958	-	HS_0815	-	hypothetical protein
821	 37.29	0	890297..891685	+	462	113460959	htrA	HS_0816	-	periplasmic serine protease
822	 33.16	-1	891770..892330	-	186	113460960	yfkJ	HS_0817	-	low molecular weight protein-tyrosine-phosphatase
823	 31.67	-1	892379..893101	+	240	113460961	-	HS_0818	-	hypothetical protein
824	 35.93	0	893535..893996	+	153	113460962	-	HS_0819	-	hypothetical protein
825	 37.25	0	894011..895492	+	493	113460963	nusA	HS_0820	-	transcription elongation factor NusA
826	 40.62	0	895513..898008	+	831	113460964	infB	HS_0821	-	translation initiation factor IF-2
827	 37.01	0	898262..898642	+	126	113460965	rbfA	HS_0822	-	ribosome-binding factor A
828	 37.22	0	898655..899581	+	308	113460966	truB	HS_0823	-	tRNA pseudouridine synthase B
829	 39.80	0	899629..901902	-	757	113460967	metE	HS_0824	-	5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase
830	 36.56	0	902107..904371	-	754	113460968	ponB	HS_0825	-	penicillin-binding protein 1B
831	 31.68	-1	904443..904805	-	120	113460969	-	HS_0826	-	hypothetical protein
832	 38.30	0	904809..905150	-	113	113460970	-	HS_0827	-	HesB family protein
833	 39.18	0	905284..906087	+	267	113460971	map	HS_0828	-	methionine aminopeptidase
834	 32.95	-1	906145..908730	+	861	113460972	glnD	HS_0829	-	PII uridylyl-transferase
835	 38.61	0	908809..909282	+	157	113460973	ribH	HS_0830	-	riboflavin synthase subunit beta
836	 34.25	0	909291..909725	+	144	113460974	nusB	HS_0831	-	transcription antitermination protein NusB
837	 38.10	0	909740..910747	+	335	113460975	thiL	HS_0832	-	thiamine-monophosphate kinase
838	 35.39	0	910757..911242	+	161	113460976	pgpA	HS_0833	-	phosphatidylglycerophosphatase
839	 31.90	-1	911255..911884	+	209	113460977	-	HS_0834	-	lysine exporter protein
840	 40.10	0	911904..912716	+	270	113460978	dapB	HS_0835	-	dihydrodipicolinate reductase
841	 35.07	0	912874..913677	+	267	113460979	xthA	HS_0836	-	exonuclease III
842	 30.28	-1	913616..914467	+	283	113460980	-	HS_0837	-	hypothetical protein
843	 35.68	0	914522..915712	-	396	113460981	aspC	HS_0838	-	aromatic amino acid aminotransferase
844	 35.26	0	915857..916945	-	362	113460982	purK	HS_0839	-	phosphoribosylaminoimidazole carboxylase ATPase subunit
845	 33.77	0	916988..917680	-	230	113460983	cah	HS_0840	-	carbonic anhydrase
846	 34.96	0	917847..918890	+	347	113460984	sohB	HS_0841	-	putative periplasmic protease
847	 36.25	0	919074..919895	+	273	113460985	-	HS_0842	-	outer membrane protein
848	 31.64	-1	919946..920950	-	334	113460986	-	HS_0843	-	fructosamine kinase family protein
849	 39.09	0	921208..923136	+	642	113460987	thrS	HS_0844	-	threonyl-tRNA synthetase
850	 32.16	-1	923192..924040	-	282	113460988	-	HS_0845	-	hypothetical protein
851	 37.91	0	924377..925687	+	436	113460989	-	HS_0846	-	xanthine/uracil family permease
852	 37.80	0	925768..926304	+	178	113460990	-	HS_0847	-	hypothetical protein
853	 33.98	0	926305..927234	+	309	113460991	-	HS_0848	-	ABC-type multidrug transport system, ATP-binding protein
854	 33.59	-1	927234..927998	+	254	113460992	-	HS_0849	-	ABC-type multidrug transport system, permease component
855	 34.85	0	928108..929490	-	460	113460993	-	HS_0850	-	hypothetical protein
856	 34.17	0	929503..930342	-	279	113460994	queF	HS_0851	-	7-cyano-7-deazaguanine reductase
857	 33.21	-1	930358..931146	-	262	113460995	-	HS_0852	-	hypothetical protein
858	 37.14	0	931232..931546	+	104	113460996	-	HS_0853	-	hypothetical protein
859	 35.18	0	931549..932253	+	234	113460997	truC	HS_0854	-	tRNA pseudouridine synthase C
860	 33.33	-1	932247..932447	+	66	113460998	-	HS_0855	-	hypothetical protein
861	 37.14	0	932597..932806	+	69	113460999	cspD	HS_0856	-	cold-shock DNA-binding protein family protein
862	 31.32	-1	932878..933324	-	148	113461000	-	HS_0857	-	hypothetical protein
863	 34.82	0	933476..935287	+	603	113461001	-	HS_0858	-	ATP-dependent Lon protease
864	 36.57	0	935382..936371	+	329	113461002	pheS	HS_0859	-	phenylalanyl-tRNA synthetase subunit alpha
865	 32.71	-1	936386..936865	+	159	113461003	-	HS_0860	-	hypothetical protein
866	 38.82	0	936880..939267	+	795	113461004	pheT	HS_0861	-	phenylalanyl-tRNA synthetase subunit beta
867	 36.73	0	939270..939563	+	97	113461005	himA	HS_0862	-	integration host factor, alpha-subunit
868	 33.97	0	939707..940651	-	314	113461006	-	HS_0863	-	hypothetical protein
869	 37.19	0	940859..942181	+	440	113461007	kicB	HS_0864	-	condesin subunit F
870	 37.37	0	942248..942991	+	247	113461008	kicA	HS_0865	-	condesin subunit E
871	 38.08	0	943114..947520	+	1468	113461009	mukB	HS_0866	-	cell division protein MukB
872	 37.08	0	947677..948531	+	284	113461010	-	HS_0867	-	permease
873	 32.65	-1	948627..948920	+	97	113461011	-	HS_0868	-	hypothetical protein
874	 27.99	-2	949454..949846	+	130	113461012	-	HS_0869	-	hypothetical protein
875	 30.49	-1	949941..950996	+	351	113461013	-	HS_0870	-	hypothetical protein
876	 35.27	0	951085..951342	+	85	113461014	-	HS_0871	-	hypothetical protein
877	 34.98	0	951474..952934	+	486	113461015	sbcB	HS_0872	-	exonuclease I
878	 37.15	0	953614..953901	-	95	113461016	rplY	HS_0873	-	50S ribosomal protein L25
879	 33.17	-1	954122..954727	+	201	113461017	-	HS_0874	-	hypothetical protein
880	 39.83	0	954900..955253	-	117	113461018	rplT	HS_0875	-	50S ribosomal protein L20
881	 37.88	0	955324..955521	-	65	113461019	rpmI	HS_0876	-	50S ribosomal protein L35
882	 39.38	0	955620..956099	-	159	113461020	infC	HS_0877	-	translation initiation factor IF-3
883	 33.85	0	956523..957296	+	257	113461021	fnr	HS_0878	-	fumarate/nitrate reduction transcriptional regulator
884	 34.63	0	957447..958370	+	307	113461022	uspE	HS_0879	-	universal stress protein UspE
885	 32.88	-1	958415..959746	-	443	113461023	folC	HS_0880	-	folylpolyglutamate synthase
886	 37.33	0	959736..960635	-	299	113461024	accD	HS_0881	-	acetyl-CoA carboxylase subunit beta
887	 35.24	0	960720..961664	-	314	113461025	usg	HS_0882	-	aspartate-semialdehyde dehydrogenase
888	 37.78	0	961769..962578	-	269	113461026	trpH	HS_0883	-	TrpH protein
889	 35.98	0	962676..965285	-	869	113461027	pepN	HS_0884	-	aminopeptidase N
890	 35.73	0	965394..967853	-	819	113461028	glgP	HS_0885	-	glycogen phosphorylase
891	 36.94	0	967975..969414	-	479	113461029	glgA	HS_0886	-	glycogen synthase
892	 36.00	0	969484..970794	-	436	113461030	glgC	HS_0887	-	glucose-1-phosphate adenylyltransferase
893	 36.56	0	970853..972835	-	660	113461031	glgX	HS_0888	-	glycogen operon protein
894	 37.62	0	972861..975284	-	807	113461032	glgB	HS_0889	-	1,4-alpha-glucan branching enzyme
895	 35.52	0	975296..977395	-	699	113461033	malQ	HS_0890	-	4-alpha-glucanotransferase
896	 36.11	0	977505..977972	-	155	113461034	-	HS_0891	-	hypothetical protein
897	 37.57	0	978062..980845	-	927	113461035	pqqL	HS_0892	-	zinc protease
898	 37.20	0	980845..981645	-	266	113461036	-	HS_0893	-	hypothetical protein
899	 39.40	0	981768..983234	-	488	113461037	-	HS_0894	-	hypothetical protein
900	 38.49	0	983429..985075	-	548	113461038	glnS	HS_0895	-	glutaminyl-tRNA synthetase
901	 40.42	0	985301..986245	+	314	113461039	-	HS_0896	-	hypothetical protein
902	 38.38	0	986232..989321	-	1029	113461040	ttrA	HS_0897	-	tetrathionate reductase, subunit A
903	 34.21	0	989314..990342	-	342	113461041	ttrC	HS_0898	-	tetrathionate reductase, subunit C
904	 39.02	0	990339..991076	-	245	113461042	ttrB	HS_0899	-	tetrathionate reductase, subunit B
905	 33.04	-1	991289..992986	+	565	113461043	ttrS	HS_0900	-	sensor kinase
906	 31.47	-1	992988..993578	+	196	113461044	ttrR	HS_0901	-	two component response regulator
907	 35.74	0	993618..995072	-	484	113461045	thiI	HS_0902	-	thiamine biosynthesis protein ThiI
908	 39.46	0	995253..995513	+	86	113461046	xseB	HS_0903	-	exodeoxyribonuclease VII small subunit
909	 38.05	0	995529..996419	+	296	113461047	ispA	HS_0904	-	farnesyl-diphosphate synthase
910	 38.62	0	996452..998305	+	617	113461048	dxs	HS_0905	-	1-deoxy-D-xylulose-5-phosphate synthase
911	 34.54	0	998563..999471	+	302	113461049	-	HS_0906	-	permease
912	 38.34	0	999657..1000175	+	172	113461050	fabA	HS_0907	-	3-hydroxydecanoyl-(acyl carrier protein) dehydratase
913	 36.44	0	1000290..1002155	-	621	113461051	sppA	HS_0908	-	protease IV family protein
914	 37.12	0	1002283..1002837	+	184	113461052	-	HS_0909	-	nitroreductase family protein
915	 35.01	0	1002903..1003559	-	218	113461053	folE	HS_0910	-	GTP cyclohydrolase I
916	 38.48	0	1003736..1004920	+	394	113461054	moeA	HS_0911	-	molybdopterin molybdochelatase
917	 37.04	0	1004928..1005656	+	242	113461055	moeB	HS_0912	-	molybdopterin biosynthesis protein MoeB
918	 47.39	+2	1005729..1006361	-	210	113461056	purN	HS_0913	-	phosphoribosylglycinamide formyltransferase
37.21	MEAN

3.48	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.