IslandPathversion 1.0

IslandPath Analysis: Haemophilus somnus 129PT



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 37.21 STD DEV: 3.48
Haemophilus somnus 129PT, complete genome - 1..2007700
1792 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
715	 36.85	0	753459..755138	+	559	113460853	lctP	HS_0708	-	L-lactate permease
716	 35.93	0	755218..755949	+	243	113460854	-	HS_0709	-	hypothetical protein
717	 38.08	0	755951..757363	+	470	113460855	-	HS_0710	-	hypothetical protein
718	 36.89	0	757444..758061	+	205	113460856	-	HS_0711	-	hypothetical protein
719	 36.54	0	758136..759848	-	570	113460857	dipZ	HS_0712	-	thiol:disulfide interchange protein precursor
720	 35.15	0	760056..760772	+	238	113460858	arcA	HS_0713	-	two-component response regulator
721	 34.96	0	760954..761934	-	326	113460859	rluC	HS_0714	-	23S rRNA pseudouridylate synthase C
722	 37.96	0	762353..765181	+	942	113460860	rne	HS_0715	-	ribonuclease E
723	 37.58	0	765404..765898	+	164	113460861	-	HS_0716	-	transposase
724	 39.85	0	765882..766541	+	219	113460862	-	HS_0717	-	transposase
725	 36.66	0	767061..769916	-	951	113460863	polA	HS_0718	-	DNA polymerase I
726	 35.47	0	770124..772136	+	670	113460864	rep	HS_0719	-	ATP-dependent DNA helicase Rep
727	 36.40	0	776536..777057	-	173	113460865	hugZ	HS_0722	-	heme binding protein
728	 38.18	0	777075..777569	-	164	113460866	hugX	HS_0723	-	heme utilization protein HuvX
729	 38.73	0	777773..778402	+	209	113460867	rrmJ	HS_0724	-	23S rRNA methyltransferase J
730	 39.15	0	778524..780362	+	612	113460868	ftsH	HS_0725	-	FtsH peptidase
731	 26.67	-2	780444..780668	+	74	113460869	-	HS_0726	-	hypothetical protein
732	 28.77	-2	780724..781380	+	218	113460870	licD	HS_0727	-	lipopolysaccharide cholinephosphotransferase
733	 37.14	0	782166..783110	-	314	113460871	hemR	HS_0728	-	hemin receptor, outer membrane protein
734	 37.80	0	783368..784195	+	275	113460872	folP	HS_0729	-	dihydropteroate synthase
735	 40.67	0	784286..785620	+	444	113460873	mrsA	HS_0730	-	phosphoglucosamine mutase
736	 38.46	0	785556..786101	+	181	113460874	sixA	HS_0731	-	phosphohistidine phosphatase
737	 36.46	0	786106..787065	+	319	113460875	-	HS_0732	-	permease
738	 38.17	0	787193..789115	+	640	113460876	dinG	HS_0733	-	ATP-dependent DNA helicase
739	 41.56	+1	789120..789836	+	238	113460877	-	HS_0734	-	glycoprotease family protein
740	 37.31	0	790062..791744	+	560	113460878	fadD	HS_0735	-	long-chain-fatty-acid--CoA ligase
741	 36.65	0	791850..792995	+	381	113460879	rnd	HS_0736	-	ribonuclease D
742	 35.71	0	793113..793700	-	195	113460880	-	HS_0737	-	hypothetical protein
743	 32.48	-1	793762..794346	-	194	113460881	-	HS_0738	-	phosphoheptose isomerase
744	 39.67	0	794352..794714	-	120	113460882	-	HS_0739	-	hypothetical protein
745	 34.16	0	794725..796539	-	604	113460883	lppC	HS_0740	-	LppC precursor
746	 38.42	0	796556..797401	+	281	113460884	-	HS_0741	-	methyltransferase
747	 38.30	0	797478..798101	+	207	113460885	-	HS_0742	-	translation factor SUA5
748	 39.98	0	798231..799208	+	325	113460886	rluB	HS_0743	-	ribosomal large subunit pseudouridine synthase B
749	 30.00	-2	799472..799891	-	139	113460887	-	HS_0744	-	hypothetical protein
750	 30.56	-1	799904..800155	-	83	113460888	-	HS_0745	-	hypothetical protein
751	 36.00	0	800661..802046	-	461	113460889	-	HS_0746	-	outer membrane protein
752	 34.70	0	802177..802908	-	243	113460890	deoR	HS_0747	-	deoxyribose operon repressor
753	 35.85	0	802933..803607	-	224	113460891	deoC	HS_0748	-	deoxyribose-phosphate aldolase
754	 36.16	0	803777..804697	+	306	113460892	rbsK	HS_0749	-	ribokinase
755	 34.90	0	804726..806000	+	424	113460893	fucP	HS_0750	-	fucose permease
756	 37.28	0	806002..807015	+	337	113460894	-	HS_0751	-	hypothetical protein
757	 40.56	0	807284..807712	+	142	113460895	rplM	HS_0752	-	50S ribosomal protein L13
758	 43.77	+1	807729..808121	+	130	113460896	rpsI	HS_0753	-	30S ribosomal protein S9
759	 34.74	0	808266..808904	+	212	113460897	sspA	HS_0754	-	stringent starvation protein A
760	 34.21	0	808912..809367	+	151	113460898	sspB	HS_0755	-	ClpXP protease specificity-enhancing factor
761	 38.82	0	809440..810843	-	467	113460899	asnC	HS_0756	-	asparaginyl-tRNA synthetase
762	 32.43	-1	811046..812263	+	405	113460900	mlc	HS_0757	-	NagC-like transcriptional regulator
763	 33.21	-1	812399..813187	-	262	113460901	-	HS_0758	-	IclR family transcriptional regulator
764	 38.04	0	813410..814408	+	332	113460902	mdh	HS_0759	-	2,3-diketo-L-gulonate reductase
765	 34.16	0	814506..814988	+	160	113460903	-	HS_0760	-	tripartite ATP-independent periplasmic transporter DctQ
766	 37.86	0	814985..816265	+	426	113460904	-	HS_0761	-	DedA family integral membrane protein
767	 36.78	0	816285..817271	+	328	113460905	-	HS_0762	-	C4-dicarboxylate transport system, periplasmic component
768	 39.79	0	817351..818868	+	505	113460906	rbsA	HS_0763	-	ribose ABC transporter, ATP-binding protein
769	 39.43	0	818911..819960	+	349	113460907	rbsC	HS_0764	-	ribose ABC transporter, permease
770	 38.56	0	820001..821110	+	369	113460908	rbsB	HS_0765	-	ABC-type sugar-binding periplasmic protein
771	 36.26	0	821173..822060	+	295	113460909	-	HS_0766	-	gluconolactonase
772	 34.82	0	822127..823065	-	312	113460910	-	HS_0767	-	sugar ABC transporter, periplasmic sugar-binding protein
773	 32.53	-1	823280..824770	+	496	113460911	rbsA	HS_0768	-	ribose ABC transporter, ATP-binding protein
774	 34.50	0	824779..825807	+	342	113460912	rbsC	HS_0769	-	ribose transport system permease
775	 37.87	0	825909..827363	+	484	113460913	sgbK	HS_0770	-	L-xylulose kinase
776	 37.50	0	827374..828021	+	215	113460914	ulaD	HS_0771	-	3-keto-L-gulonate-6-phosphate decarboxylase
777	 37.46	0	828038..828910	+	290	113460915	sgbU	HS_0772	-	putative L-xylulose 5-phosphate 3-epimerase
778	 38.94	0	828904..829599	+	231	113460916	sgbE	HS_0773	-	L-ribulose-5-phosphate 4-epimerase
779	 37.10	0	829642..830463	-	273	113460917	-	HS_0774	-	HAD superfamily hydrolase
780	 35.74	0	830702..831658	+	318	113460918	pldB	HS_0775	-	lysophospholipase L2
781	 33.85	0	831636..832019	-	127	113460919	crcB	HS_0776	-	camphor resistance protein CrcB
782	 36.26	0	832039..832857	-	272	113460920	-	HS_0777	-	HAD superfamily hydrolase
783	 37.56	0	832895..833557	-	220	113460921	frxA	HS_0778	-	NAD(P)H nitroreductase
784	 36.70	0	833578..833874	-	98	113460922	-	HS_0779	-	hypothetical protein
785	 39.19	0	833899..835110	-	403	113460923	tyrP	HS_0780	-	tyrosine-specific transport protein
786	 34.57	0	835204..836253	-	349	113460924	fbpC	HS_0781	-	iron(III) ABC transporter, ATP-binding protein
787	 34.59	0	836253..837920	-	555	113460925	fbpB	HS_0782	-	iron-uptake permease inner membrane protein
788	 35.50	0	838077..839093	-	338	113460926	fbpA	HS_0783	-	periplasmic iron-binding protein
789	 37.17	0	839284..840975	-	563	113460927	dld	HS_0784	-	D-lactate dehydrogenase
790	 39.49	0	841187..842014	+	275	113460928	dapD	HS_0785	-	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase
791	 32.97	-1	842072..842908	-	278	113460929	purU	HS_0786	-	formyltetrahydrofolate deformylase
792	 36.05	0	842970..843374	-	134	113460930	hns	HS_0787	-	DNA-binding protein H-NS
793	 39.08	0	843815..845362	+	515	113460931	-	HS_0788	-	Na(+)/H(+) antiporter
794	 35.89	0	845481..846497	+	338	113460932	galE	HS_0789	-	UDP-galactose 4-epimerase
795	 39.58	0	847130..858892	+	3920	113460933	-	HS_0790	-	large adhesin
796	 37.84	0	858994..861033	-	679	113460934	prlC	HS_0791	-	oligopeptidase A
797	 24.60	-2	861320..862510	+	396	113460935	-	HS_0792	-	aminotransferase
798	 31.77	-1	862500..863909	+	469	113460936	nhaC	HS_0793	-	Na(+)/H(+) antiporter
799	 37.37	0	864058..865221	+	387	113460937	xylR	HS_0794	-	AraC family transcriptional regulator
800	 31.40	-1	865329..865691	+	120	113460938	-	HS_0795	-	hypothetical protein
801	 34.22	0	865741..867312	+	523	113460939	-	HS_0796	-	oligopeptide transporter, periplasmic-binding protein
802	 36.18	0	867381..869315	+	644	113460940	uup-A	HS_0797	-	ABC transporter ATPase component
803	 42.31	+1	869335..869568	+	77	113460941	-	HS_0798	-	hypothetical protein
804	 39.11	0	869528..870514	-	328	113460942	-	HS_0799	-	dihydroorotate oxidase B, catalytic subunit
805	 36.34	0	870879..872108	-	409	113460943	tnaB	HS_0800	-	tryptophan permease
806	 38.49	0	872174..873589	-	471	113460944	tnaA	HS_0801	-	tryptophanase
807	 39.55	0	873911..876049	-	712	113460945	pta	HS_0802	-	phosphate acetyltransferase
808	 38.35	0	876116..877312	-	398	113460946	ackA	HS_0803	-	acetate kinase
809	 33.56	-1	877544..877978	+	144	113460947	-	HS_0804	-	hypothetical protein
810	 31.54	-1	878091..878369	+	92	113460948	-	HS_0805	-	hypothetical protein
811	 39.82	0	878467..880872	-	801	113460949	torZ	HS_0806	-	trimethylamine-N-oxide reductase 2, biotin sulfoxide reductase
812	 39.14	0	881203..882339	-	378	113460950	torY	HS_0807	-	cytochrome c-type protein
813	 32.23	-1	882511..883236	-	241	113460951	yafS	HS_0808	-	SAM-dependent methyltransferase
814	 36.47	0	883270..883971	+	233	113460952	gloB	HS_0809	-	hydroxyacylglutathione hydrolase
37.21	MEAN

3.48	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.