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IslandPath Analysis: Haemophilus somnus 129PT

Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).

A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 37.21 STD DEV: 3.48

Haemophilus somnus 129PT, complete genome - 1..2007700
1792 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 28.82	-2	384..1181	+	265	113460150	-	HS_0001	-	integrase
2	 36.41	0	1927..3324	+	465	113460151	pncB	HS_0002	-	putative nicotinate phosphoribosyltransferase
3	 38.28	0	3401..3865	-	154	113460152	gptA	HS_0003	-	xanthine-guanine phosphoribosyltransferase
4	 37.58	0	3990..5450	+	486	113460153	pepD	HS_0004	-	M20C family Xaa-His dipeptidase
5	 38.90	0	5598..8168	-	856	113460154	mutS	HS_0005	-	DNA mismatch repair protein
6	 38.24	0	8310..9125	-	271	113460155	aroE	HS_0006	-	shikimate 5-dehydrogenase
7	 35.23	0	9129..9707	-	192	113460156	-	HS_0007	-	Sua5 family translation factor
8	 36.79	0	9677..10225	-	182	113460157	-	HS_0008	-	DNA topoisomerase I-related protein
9	 35.11	0	10359..10922	+	187	113460158	-	HS_0009	-	hypothetical protein
10	 38.97	0	10922..11347	+	141	113460159	-	HS_0010	-	Holliday junction resolvase-like protein
11	 32.15	-1	11348..12106	-	252	113460160	-	HS_0011	-	sugar metabolism transcriptional regulator
12	 39.38	0	12277..13185	+	302	113460161	-	HS_0012	-	3-hydroxyisobutyrate dehydrogenase family protein
13	 41.55	+1	13187..14428	+	413	113460162	-	HS_0013	-	secretion system component
14	 40.13	0	14425..15057	+	210	113460163	fucA	HS_0014	-	putative aldolase
15	 41.57	+1	15060..15836	+	258	113460164	-	HS_0015	-	hydroxypyruvate isomerase
16	 35.97	0	15963..16910	+	315	113460165	-	HS_0016	-	hypothetical protein
17	 41.34	+1	16926..18398	+	490	113460166	gntP	HS_0017	-	GntP family permease
18	 36.16	0	18540..18716	-	58	113461929	-	HS_0017a	-	hypothetical protein
19	 24.52	-2	19007..20050	+	347	113460167	-	HS_0018	-	hypothetical protein
20	 36.82	0	20037..21212	+	391	113460168	-	HS_0019	-	major facilitator superfamily permease
21	 34.89	0	21510..22280	-	256	113460169	uxuR	HS_0020	-	GntR family transcriptional regulator
22	 35.98	0	22388..23446	+	352	113460170	-	HS_0021	-	Zn-binding dehydrogenase
23	 33.54	-1	23475..24458	+	327	113460171	-	HS_0022	-	dicarboxylate-binding protein
24	 33.54	-1	24523..25002	+	159	113460172	-	HS_0023	-	permease (transport protein)
25	 36.00	0	24999..26273	+	424	113460173	-	HS_0024	-	permease (transport protein)
26	 41.67	+1	26460..27107	+	215	113460174	-	HS_0025	-	allophanate hydrolase, subunit 1
27	 42.04	+1	27104..28033	+	309	113460175	-	HS_0026	-	allophanate hydrolase, subunit 2
28	 42.47	+1	28020..28763	+	247	113460176	-	HS_0027	-	hypothetical protein
29	 40.82	+1	28889..30076	+	395	113460177	-	HS_0028	-	permease (transport protein)
30	 32.65	-1	30320..31048	+	242	113460178	araC	HS_0029	-	DNA-binding transcriptional regulator AraC
31	 36.62	0	31236..32210	+	324	113460179	-	HS_0030	-	sugar ABC transporter, sugar-binding protein
32	 34.76	0	32278..33753	+	491	113460180	-	HS_0031	-	sugar ABC transporter, ATP-binding
33	 35.90	0	33722..34696	+	324	113460181	-	HS_0032	-	sugar ABC transporter, permease
34	 33.12	-1	34699..35649	+	316	113460182	-	HS_0033	-	sugar ABC transporter, permease
35	 36.41	0	35662..37254	+	530	113460183	-	HS_0034	-	sugar kinase
36	 38.63	0	37376..38092	-	238	113460184	-	HS_0035	-	peroxiredoxin
37	 36.17	0	38221..39135	+	304	113460185	oxyR	HS_0036	-	DNA-binding transcriptional regulator OxyR
38	 32.07	-1	39262..39657	-	131	113460186	mscL	HS_0037	-	large-conductance mechanosensitive channel
39	 37.25	0	39742..41118	-	458	113460187	trkA	HS_0038	-	potassium transporter peripheral membrane component
40	 40.17	0	41203..42591	-	462	113460188	rsmB	HS_0039	-	ribosomal RNA small subunit methyltransferase B
41	 40.04	0	42588..43541	-	317	113460189	fmt	HS_0040	-	methionyl-tRNA formyltransferase
42	 35.48	0	43616..44128	-	170	113460190	def	HS_0041	-	peptide deformylase
43	 36.98	0	44316..44945	-	209	113460191	narP	HS_0042	-	nitrate/nitrite response regulator protein
44	 35.44	0	44960..47470	-	836	113460192	cyaA	HS_0043	-	adenylate cyclase
45	 39.96	0	47625..48590	+	321	113460193	hemC	HS_0044	-	porphobilinogen deaminase
46	 37.52	0	48677..49345	+	222	113460194	hemD	HS_0045	-	uroporphyrinogen-III synthase
47	 34.67	0	49546..50745	+	399	113460195	hemX	HS_0046	-	uroporphyrin-III C-methyltransferase
48	 37.32	0	50760..52037	+	425	113460196	hemY	HS_0047	-	porphyrin biosynthesis protein
49	 39.41	0	52092..53078	-	328	113460197	dusA	HS_0048	-	tRNA-dihydrouridine synthase A
50	 40.03	0	53491..55044	-	517	113460198	-	HS_0049	-	autoinducer-2 (AI-2) kinase
51	 40.52	0	55098..56057	-	319	113460199	-	HS_0050	-	sorbitol operon transcriptional regulator
52	 39.10	0	56274..57782	+	502	113460200	ego	HS_0051	-	ABC transporter, ATP-binding, sugar transport
53	 37.34	0	57791..58789	+	332	113460201	-	HS_0052	-	ABC transporter, permease, sugar transport
54	 40.55	0	58786..59769	+	327	113460202	-	HS_0053	-	ABC transporter, permease, sugar transport
55	 40.10	0	59882..60901	+	339	113460203	-	HS_0054	-	ABC transporter, solute-binding, sugar transport
56	 41.52	+1	60920..61798	+	292	113460204	-	HS_0055	-	aldolase
57	 34.32	0	61864..62166	+	100	113460205	-	HS_0056	-	autoinducer-2 (AI-2) modifying protein LsrG
58	 34.74	0	62159..62869	+	236	113460206	rpe	HS_0057	-	ribulose-phosphate 3-epimerase
59	 41.03	+1	63132..63443	+	103	113460207	rpsJ	HS_0058	-	SSU ribosomal protein S10P
60	 39.71	0	63460..64086	+	208	113460208	rplC	HS_0059	-	50S ribosomal protein L3
61	 41.46	+1	64102..64704	+	200	113460209	rplD	HS_0060	-	50S ribosomal protein L4
62	 37.58	0	64701..65006	+	101	113460210	rplW	HS_0061	-	50S ribosomal protein L23
63	 42.46	+1	65027..65848	+	273	113460211	rplB	HS_0062	-	50S ribosomal protein L2
64	 44.57	+2	65875..66150	+	91	113460212	rpsS	HS_0063	-	30S ribosomal protein S19
65	 41.14	+1	66161..66493	+	110	113460213	rplV	HS_0064	-	50S ribosomal protein L22
66	 42.37	+1	66510..67217	+	235	113460214	rpsC	HS_0065	-	30S ribosomal protein S3
67	 42.34	+1	67231..67641	+	136	113460215	rplP	HS_0066	-	50S ribosomal protein L16
68	 41.67	+1	67641..67832	+	63	113460216	rpmC	HS_0067	-	50S ribosomal protein L29
69	 38.43	0	67832..68086	+	84	113460217	rpsQ	HS_0068	-	SSU ribosomal protein S17P
70	 39.74	0	68283..70889	+	868	113460218	irp	HS_0069	-	iron-regulated outer membrane protein
71	 43.28	+1	71086..71457	+	123	113460219	rplN	HS_0070	-	50S ribosomal protein L14
72	 35.58	0	71470..71781	+	103	113460220	rplX	HS_0071	-	50S ribosomal protein L24
73	 40.56	0	71799..72338	+	179	113460221	rplE	HS_0072	-	50S ribosomal protein L5
74	 42.16	+1	72350..72655	+	101	113460222	rpsN	HS_0073	-	SSU ribosomal protein S14P
75	 41.48	+1	72692..73084	+	130	113460223	rpsH	HS_0074	-	30S ribosomal protein S8
76	 41.01	+1	73101..73634	+	177	113460224	rplF	HS_0075	-	50S ribosomal protein L6
77	 42.94	+1	73648..74001	+	117	113460225	rplR	HS_0076	-	50S ribosomal protein L18
78	 43.51	+1	74017..74517	+	166	113460226	rpsE	HS_0077	-	30S ribosomal protein S5
79	 37.70	0	74521..74703	+	60	113460227	rpmD	HS_0078	-	50S ribosomal protein L30
80	 41.84	+1	74708..75142	+	144	113460228	rplO	HS_0079	-	50S ribosomal protein L15
81	 36.35	0	75150..76475	+	441	113460229	secY	HS_0080	-	preprotein translocase subunit SecY
82	 37.72	0	76503..76616	+	37	113461930	rpmJ	HS_0080a	-	50S ribosomal protein L36
83	 42.86	+1	76760..77116	+	118	113460230	rpsM	HS_0081	-	30S ribosomal protein S13
84	 43.85	+1	77132..77521	+	129	113460231	rpsK	HS_0082	-	30S ribosomal protein S11
85	 40.26	0	77551..78171	+	206	113460232	rpsD	HS_0083	-	30S ribosomal protein S4
86	 40.10	0	78204..79193	+	329	113460233	rpoA	HS_0084	-	DNA-directed RNA polymerase subunit alpha
87	 41.09	+1	79235..79621	+	128	113460234	rplQ	HS_0085	-	50S ribosomal protein L17
88	 34.35	0	79692..80378	-	228	113460235	-	HS_0086	-	hypothetical protein
89	 33.72	-1	80383..81660	-	425	113460236	nadR	HS_0087	-	nicotinamide-nucleotide adenylyltransferase
90	 30.58	-1	81736..82026	-	96	113460237	-	HS_0088	-	hypothetical protein
91	 43.04	+1	82323..82961	+	212	113460238	ribB	HS_0089	-	3,4-dihydroxy-2-butanone 4-phosphate synthase
92	 42.49	+1	83118..83783	-	221	113460239	thiE	HS_0090	-	thiamine-phosphate pyrophosphorylase
93	 41.70	+1	83783..84595	-	270	113460240	thiD	HS_0091	-	phosphomethylpyrimidine kinase
94	 41.20	+1	84588..85388	-	266	113460241	thiM	HS_0092	-	hydroxyethylthiazole kinase
95	 37.44	0	85961..86569	+	202	113460242	recO	HS_0093	-	DNA repair protein RecO
96	 37.05	0	86590..87909	+	439	113460243	rumA	HS_0094	-	23S rRNA 5-methyluridine methyltransferase
97	 37.98	0	87921..90158	+	745	113460244	relA	HS_0095	-	GTP diphosphokinase (GTP pyrophosphokinase)
98	 36.41	0	90183..90539	+	118	113460245	dgkA	HS_0096	-	diacylglycerol kinase
99	 28.29	-2	92709..92966	+	85	113460246	-	HS_0099	-	hypothetical protein
100	 27.78	-2	93052..93987	+	311	113460247	-	HS_0100	-	transcriptional regulator
37.21	MEAN

3.48	STD DEV

Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.