IslandPathversion 1.0

IslandPath Analysis: Haemophilus somnus 129PT



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 37.21 STD DEV: 3.48
Haemophilus somnus 129PT, complete genome - 1..2007700
1792 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1693	 36.69	0	1918677..1920017	-	446	113461829	nqrA	HS_1693	-	Na(+)-translocating NADH-quinone reductase subunit A
1694	 32.21	-1	1920345..1920701	-	118	113461830	bolA	HS_1694	-	transcriptional regulator BolA
1695	 35.43	0	1920846..1921274	-	142	113461831	atpC	HS_1695	-	F0F1 ATP synthase subunit epsilon
1696	 39.08	0	1921317..1922690	-	457	113461832	atpD	HS_1696	-	F0F1 ATP synthase subunit beta
1697	 34.02	0	1922704..1923573	-	289	113461833	atpG	HS_1697	-	F0F1 ATP synthase subunit gamma
1698	 38.13	0	1923597..1925138	-	513	113461834	atpA	HS_1698	-	F0F1 ATP synthase subunit alpha
1699	 34.03	0	1925151..1925726	-	191	113461835	atpH	HS_1699	-	F0F1 ATP synthase subunit delta
1700	 36.73	0	1925713..1926183	-	156	113461836	atpF	HS_1700	-	F0F1 ATP synthase subunit B
1701	 32.16	-1	1926247..1926501	-	84	113461837	atpE	HS_1701	-	F0F1 ATP synthase subunit C
1702	 33.58	-1	1926600..1927397	-	265	113461838	atpB	HS_1702	-	F0F1 ATP synthase subunit A
1703	 22.31	-2	1927416..1927805	-	129	113461839	-	HS_1703	-	F0F1 ATP synthase subunit I
1704	 30.36	-1	1927918..1928556	-	212	113461840	gidB	HS_1704	-	glucose-inhibited division protein B
1705	 34.87	0	1928580..1930469	-	629	113461841	gidA	HS_1705	-	tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
1706	 29.78	-2	1930849..1931298	-	149	113461842	mioC	HS_1706	-	flavodoxin
1707	 27.85	-2	1931364..1931582	-	72	113461843	-	HS_1707	-	hypothetical protein
1708	 33.83	0	1931837..1934260	+	807	113461844	gyrB	HS_1708	-	DNA gyrase subunit B
1709	 37.61	0	1934310..1934963	+	217	113461845	-	HS_1709	-	transposase
1710	 27.57	-2	1935023..1935265	+	80	113461846	-	HS_1710	-	hypothetical protein
1711	 34.35	0	1935345..1937219	-	624	113461847	recQ	HS_1711	-	ATP-dependent DNA helicase RecQ
1712	 34.30	0	1937219..1937527	-	102	113461848	cyaY	HS_1712	-	frataxin-like protein
1713	 36.04	0	1937805..1939058	+	417	113461849	lysA	HS_1713	-	diaminopimelate decarboxylase
1714	 34.39	0	1939322..1940830	+	502	113461850	-	HS_1714	-	SNF family sodium-dependent transporter
1715	 29.43	-2	1941365..1942081	-	238	113461851	tfoX	HS_1715	-	DNA transformation protein
1716	 33.65	-1	1948118..1949056	-	312	113461852	dsdC	HS_1716	-	DNA-binding transcriptional regulator DsdC
1717	 36.85	0	1949246..1950583	+	445	113461853	dsdX	HS_1717	-	permease DsdX
1718	 39.80	0	1950612..1951910	+	432	113461854	dsdA	HS_1718	-	D-serine dehydratase
1719	 40.38	0	1952412..1953263	+	283	113461855	-	HS_1719	-	chromosome partitioning-related protein
1720	 41.90	+1	1953256..1954632	+	458	113461856	dnaB	HS_1720	-	replicative DNA helicase
1721	 40.25	0	1954622..1956328	+	568	113461857	-	HS_1721	-	hypothetical protein
1722	 39.31	0	1956339..1956890	+	183	113461858	-	HS_1722	-	hypothetical protein
1723	 39.27	0	1957053..1958282	+	409	113461859	-	HS_1723	-	hypothetical protein
1724	 41.30	+1	1958896..1959648	+	250	113461860	-	HS_1724	-	hypothetical protein
1725	 35.09	0	1959689..1960201	+	170	113461861	-	HS_1725	-	hypothetical protein
1726	 35.21	0	1960349..1961146	+	265	113461862	-	HS_1726	-	hypothetical protein
1727	 33.33	-1	1961150..1961359	+	69	113461863	-	HS_1727	-	hypothetical protein
1728	 31.79	-1	1961363..1961557	-	64	113461864	-	HS_1728	-	hypothetical protein
1729	 41.33	+1	1961745..1962194	+	149	113461865	ssb	HS_1729	-	single-stranded DNA binding protein
1730	 29.63	-2	1962274..1962732	+	152	113461866	-	HS_1730	-	hypothetical protein
1731	 33.46	-1	1962695..1963465	-	256	113461867	-	HS_1731	-	hypothetical protein
1732	 40.21	0	1963578..1964057	+	159	113461868	-	HS_1732	-	hypothetical protein
1733	 27.17	-2	1964537..1965055	+	172	113461869	-	HS_1733	-	hypothetical protein
1734	 32.14	-1	1965052..1965303	-	83	113461870	-	HS_1734	-	hypothetical protein
1735	 27.80	-2	1965589..1966311	-	240	113461871	-	HS_1735	-	hypothetical protein
1736	 30.84	-1	1966253..1966693	+	146	113461872	-	HS_1736	-	hypothetical protein
1737	 43.03	+1	1966695..1968725	+	676	113461873	topA	HS_1737	-	DNA topoisomerase III
1738	 36.34	0	1969488..1969952	+	154	113461874	-	HS_1738	-	hypothetical protein
1739	 39.35	0	1970033..1970431	+	132	113461875	-	HS_1739	-	hypothetical protein
1740	 39.46	0	1970520..1970813	+	97	113461876	-	HS_1740	-	hypothetical protein
1741	 36.93	0	1971203..1971508	+	101	113461877	-	HS_1741	-	hypothetical protein
1742	 40.59	0	1971652..1972299	+	215	113461878	-	HS_1742	-	hypothetical protein
1743	 44.95	+2	1972320..1972517	+	65	113461879	-	HS_1743	-	hypothetical protein
1744	 37.54	0	1972670..1973002	+	110	113461880	-	HS_1744	-	hypothetical protein
1745	 35.35	0	1973220..1973666	+	148	113461881	-	HS_1745	-	hypothetical protein
1746	 42.13	+1	1973782..1974429	+	215	113461882	-	HS_1746	-	hypothetical protein
1747	 41.90	+1	1974317..1975168	+	283	113461883	-	HS_1747	-	hypothetical protein
1748	 43.06	+1	1975087..1975857	+	256	113461884	-	HS_1748	-	hypothetical protein
1749	 34.47	0	1975888..1976151	+	87	113461885	-	HS_1749	-	hypothetical protein
1750	 43.08	+1	1976152..1976664	+	170	113461886	-	HS_1750	-	hypothetical protein
1751	 42.79	+1	1976664..1978895	+	743	113461887	-	HS_1751	-	hypothetical protein
1752	 34.81	0	1978892..1979230	+	112	113461888	-	HS_1752	-	hypothetical protein
1753	 38.84	0	1979230..1979919	+	229	113461889	-	HS_1753	-	hypothetical protein
1754	 39.68	0	1980104..1980292	+	62	113461890	-	HS_1754	-	hypothetical protein
1755	 33.33	-1	1980289..1980570	+	93	113461891	-	HS_1755	-	hypothetical protein
1756	 43.21	+1	1981051..1981374	+	107	113461892	-	HS_1756	-	hypothetical protein
1757	 40.33	0	1981385..1981627	+	80	113461893	-	HS_1757	-	hypothetical protein
1758	 39.17	0	1981636..1982046	+	136	113461894	-	HS_1758	-	hypothetical protein
1759	 43.90	+1	1982089..1982457	+	122	113461895	-	HS_1759	-	hypothetical protein
1760	 40.69	0	1982458..1983096	+	212	113461896	-	HS_1760	-	hypothetical protein
1761	 44.30	+2	1983097..1984017	+	306	113461897	-	HS_1761	-	hypothetical protein
1762	 44.51	+2	1984004..1985425	+	473	113461898	-	HS_1762	-	hypothetical protein
1763	 42.22	+1	1985437..1985841	+	134	113461899	-	HS_1763	-	hypothetical protein
1764	 42.35	+1	1985841..1988657	+	938	113461900	-	HS_1764	-	hypothetical protein
1765	 43.08	+1	1988644..1989033	+	129	113461901	-	HS_1765	-	hypothetical protein
1766	 40.33	0	1989033..1989332	+	99	113461902	-	HS_1766	-	hypothetical protein
1767	 41.65	+1	1989343..1990845	+	500	113461903	-	HS_1767	-	hypothetical protein
1768	 35.74	0	1990896..1991228	-	110	113461904	-	HS_1768	-	hypothetical protein
1769	 39.14	0	1991256..1991651	-	131	113461905	-	HS_1769	-	hypothetical protein
1770	 37.54	0	1991657..1991989	-	110	113461906	-	HS_1770	-	hypothetical protein
1771	 36.07	0	1992060..1992461	-	133	113461907	-	HS_1771	-	hypothetical protein
1772	 32.08	-1	1992461..1992700	-	79	113461908	-	HS_1772	-	hypothetical protein
1773	 35.16	0	1992821..1993258	-	145	113461909	-	HS_1773	-	hypothetical protein
1774	 42.68	+1	1993321..1995321	-	666	113461910	-	HS_1774	-	hypothetical protein
1775	 44.55	+2	1995333..1996259	-	308	113461911	-	HS_1775	-	hypothetical protein
1776	 43.61	+1	1996261..1996698	-	145	113461912	-	HS_1776	-	hypothetical protein
1777	 39.23	0	1996990..1997430	+	146	113461913	-	HS_1777	-	hypothetical protein
1778	 41.47	+1	1997526..1997783	+	85	113461914	-	HS_1778	-	hypothetical protein
1779	 36.18	0	1997780..1998025	+	81	113461915	-	HS_1779	-	hypothetical protein
1780	 41.18	+1	1998290..1999258	+	322	113461916	-	HS_1780	-	antirestriction protein
1781	 30.43	-1	1999490..1999903	+	137	113461917	-	HS_1781	-	hypothetical protein
1782	 32.91	-1	2000019..2000252	+	77	113461918	-	HS_1782	-	hypothetical protein
1783	 37.82	0	2000602..2001069	-	155	113461919	-	HS_1783	-	hypothetical protein
1784	 37.88	0	2001071..2001334	-	87	113461920	-	HS_1784	-	hypothetical protein
1785	 37.55	0	2001472..2001708	-	78	113461921	-	HS_1785	-	hypothetical protein
1786	 39.63	0	2001784..2002053	-	89	113461922	-	HS_1786	-	hypothetical protein
1787	 31.51	-1	2002226..2003155	+	309	113461923	-	HS_1787	-	hypothetical protein
1788	 29.96	-2	2003166..2003639	-	157	113461924	-	HS_1788	-	hypothetical protein
1789	 39.66	0	2003858..2004094	+	78	113461925	-	HS_1789	-	hypothetical protein
1790	 31.00	-1	2004189..2004617	-	142	113461926	-	HS_1790	-	hypothetical protein
1791	 31.17	-1	2004619..2005728	-	369	113461927	-	HS_1791	-	hypothetical protein
1792	 37.20	0	2006035..257	+	640	113461928	-	HS_1792	-	hypothetical protein
37.21	MEAN

3.48	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.