IslandPathversion 1.0

IslandPath Analysis: Haemophilus somnus 129PT



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 37.21 STD DEV: 3.48
Haemophilus somnus 129PT, complete genome - 1..2007700
1792 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1376	 40.87	+1	1560979..1562226	-	415	113461512	-	HS_1369	-	hypothetical protein
1377	 45.61	+2	1562322..1562606	-	94	113461513	-	HS_1370	-	hypothetical protein
1378	 48.82	+2	1562582..1563130	-	182	113461514	-	HS_1371	-	hypothetical protein
1379	 44.78	+2	1563261..1565549	-	762	113461515	-	HS_1372	-	phage-related tail fiber protein
1380	 42.12	+1	1565542..1567521	-	659	113461516	-	HS_1373	-	hypothetical protein
1381	 35.56	0	1567585..1568034	-	149	113461517	-	HS_1374	-	hypothetical protein
1382	 42.31	+1	1568244..1568633	-	129	113461518	-	HS_1375	-	hypothetical protein
1383	 37.81	0	1568630..1569076	-	148	113461519	-	HS_1376	-	hypothetical protein
1384	 43.27	+1	1569138..1570133	-	331	113461520	-	HS_1377	-	hypothetical protein
1385	 43.17	+1	1570159..1571022	-	287	113461521	-	HS_1378	-	hypothetical protein
1386	 31.69	-1	1571100..1571282	-	60	113461522	-	HS_1379	-	hypothetical protein
1387	 40.26	0	1571380..1571682	-	100	113461523	-	HS_1380	-	transcription regulator
1388	 41.01	+1	1572189..1580201	-	2670	113461524	-	HS_1381	-	hypothetical protein
1389	 39.79	0	1580282..1580668	-	128	113461525	-	HS_1382	-	phage-related protein
1390	 36.69	0	1580465..1580851	+	128	113461526	-	HS_1383	-	hypothetical protein
1391	 42.09	+1	1581207..1583273	-	688	113461527	-	HS_1384	-	hypothetical protein
1392	 41.54	+1	1583386..1584933	-	515	113461528	-	HS_1385	-	hypothetical protein
1393	 38.79	0	1584933..1585628	-	231	113461529	-	HS_1386	-	terminase small subunit
1394	 40.06	0	1585825..1586151	-	108	113461530	-	HS_1387	-	hypothetical protein
1395	 42.27	+1	1586124..1586660	-	178	113461531	-	HS_1388	-	lysozyme, phage-related lysozyme
1396	 39.66	0	1586653..1586889	-	78	113461532	-	HS_1389	-	hypothetical protein
1397	 39.54	0	1587177..1588223	-	348	113461533	-	HS_1390	-	transposase
1398	 36.45	0	1588360..1588776	+	138	113461534	-	HS_1391	-	transposase
1399	 40.85	+1	1588836..1589234	-	132	113461535	-	HS_1392	-	hypothetical protein
1400	 35.80	0	1589385..1589789	-	134	113461536	-	HS_1393	-	hypothetical protein
1401	 39.54	0	1589779..1590390	-	203	113461537	-	HS_1394	-	NinG recombination protein
1402	 41.94	+1	1590548..1590733	+	61	113461538	-	HS_1395	-	hypothetical protein
1403	 43.48	+1	1590756..1591169	+	137	113461539	-	HS_1396	-	hypothetical protein
1404	 38.23	0	1591256..1592215	-	319	113461540	-	HS_1397	-	hypothetical protein
1405	 42.76	+1	1592579..1593193	+	204	113461541	-	HS_1398	-	prophage antirepressor
1406	 37.75	0	1593245..1593697	-	150	113461542	-	HS_1399	-	hypothetical protein
1407	 41.39	+1	1593710..1594243	-	177	113461543	-	HS_1400	-	DNA methylase
1408	 42.71	+1	1594258..1594950	-	230	113461544	-	HS_1401	-	replication protein P
1409	 39.27	0	1594947..1595738	-	263	113461545	-	HS_1402	-	hypothetical protein
1410	 37.75	0	1595735..1595983	-	82	113461546	-	HS_1403	-	hypothetical protein
1411	 43.27	+1	1596026..1596478	-	150	113461547	-	HS_1404	-	hypothetical protein
1412	 34.78	0	1596523..1596729	-	68	113461548	-	HS_1405	-	hypothetical protein
1413	 36.32	0	1596868..1597503	+	211	113461549	-	HS_1406	-	repressor protein
1414	 33.05	-1	1597622..1598665	+	347	113461550	-	HS_1407	-	hypothetical protein
1415	 34.85	0	1598658..1598921	+	87	113461551	-	HS_1408	-	hypothetical protein
1416	 34.97	0	1598911..1599276	+	121	113461552	-	HS_1409	-	hypothetical protein
1417	 39.70	0	1599786..1600052	+	88	113461553	-	HS_1410	-	hypothetical protein
1418	 35.98	0	1600415..1600603	-	62	113461554	-	HS_1411	-	hypothetical protein
1419	 35.95	0	1600832..1601518	+	228	113461555	-	HS_1412	-	hypothetical protein
1420	 39.39	0	1601521..1601718	+	65	113461556	-	HS_1413	-	hypothetical protein
1421	 30.67	-1	1602088..1602576	+	162	113461557	-	HS_1414	-	hypothetical protein
1422	 34.38	0	1602930..1603595	+	221	113461558	-	HS_1415	-	prophage antirepressor
1423	 42.46	+1	1603682..1603966	+	94	113461559	-	HS_1416	-	hypothetical protein
1424	 36.30	0	1603963..1604400	+	145	113461560	-	HS_1417	-	hypothetical protein
1425	 37.67	0	1604397..1604696	+	99	113461561	-	HS_1418	-	hypothetical protein
1426	 40.06	0	1604708..1605643	+	311	113461562	-	HS_1419	-	phage recombinase
1427	 40.66	0	1605636..1606304	+	222	113461563	-	HS_1420	-	hypothetical protein
1428	 41.83	+1	1606354..1607412	+	352	113461564	-	HS_1421	-	hypothetical protein
1429	 44.44	+2	1607441..1608538	+	365	113461565	-	HS_1422	-	DNA-cytosine methyltransferase
1430	 36.72	0	1608571..1609368	+	265	113461566	-	HS_1423	-	hypothetical protein
1431	 39.25	0	1609378..1609563	+	61	113461567	-	HS_1424	-	phage transcriptional regulator, AlpA
1432	 35.91	0	1609525..1610766	-	413	113461568	-	HS_1425	-	integrase
1433	 39.37	0	1611223..1612962	+	579	113461569	ychM	HS_1426	-	putative sulfate transporter YchM
1434	 39.43	0	1613005..1614381	-	458	113461570	ffh	HS_1427	-	signal recognition particle subunit FFH/SRP54 (srp54)
1435	 31.45	-1	1614531..1615328	+	265	113461571	-	HS_1428	-	permease
1436	 34.52	0	1615398..1616657	+	419	113461572	-	HS_1429	-	transporter
1437	 37.22	0	1616691..1618106	-	471	113461573	pilB	HS_1430	-	pilin/fimbriae biogenesis protein
1438	 37.34	0	1618465..1619763	+	432	113461574	tig	HS_1431	-	trigger factor
1439	 38.32	0	1619849..1620430	+	193	161486690	clpP	HS_1432	-	ATP-dependent Clp protease proteolytic subunit
1440	 36.14	0	1620446..1621690	+	414	113461576	clpX	HS_1433	-	ATP-dependent protease ATP-binding subunit
1441	 46.30	+2	1622188..1623375	-	395	113461577	amaA	HS_1434	-	N-acyl-L-amino acid amidohydrolase
1442	 41.11	+1	1623908..1624357	-	149	113461578	rplI	HS_1435	-	50S ribosomal protein L9
1443	 41.23	+1	1624376..1624603	-	75	113461579	rpsR	HS_1436	-	30S ribosomal protein S18
1444	 34.86	0	1624616..1624942	-	108	113461580	priB	HS_1437	-	primosomal replication protein N
1445	 42.86	+1	1624929..1625306	-	125	113461581	rpsF	HS_1438	-	30S ribosomal protein S6
1446	 36.65	0	1625558..1626280	-	240	113461582	-	HS_1439	-	MgtC family membrane protein
1447	 37.33	0	1626397..1627398	-	333	113461583	asnA	HS_1440	-	asparagine synthetase AsnA
1448	 34.22	0	1627573..1628025	+	150	113461584	asnC	HS_1441	-	DNA-binding transcriptional regulator AsnC
1449	 37.76	0	1628080..1628892	-	270	113461585	-	HS_1442	-	hypothetical protein
1450	 35.77	0	1628939..1630171	-	410	113461586	-	HS_1443	-	hypothetical protein
1451	 39.26	0	1630263..1631594	-	443	113461587	-	HS_1444	-	hypothetical protein
1452	 39.04	0	1631734..1632417	-	227	113461588	gpmA	HS_1445	-	phosphoglycerate mutase
1453	 35.59	0	1632653..1633405	+	250	113461589	fucR	HS_1446	-	L-fucose operon activator
1454	 36.35	0	1633660..1634952	+	430	113461590	fucP	HS_1447	-	L-fucose permease
1455	 41.26	+1	1635148..1636914	+	588	113461591	fucI	HS_1448	-	L-fucose isomerase
1456	 37.79	0	1636996..1638453	+	485	113461592	fucK	HS_1449	-	L-fuculokinase
1457	 37.70	0	1638447..1638881	+	144	113461593	fucU	HS_1450	-	fucose operon fucU protein
1458	 35.03	0	1638895..1639542	+	215	113461594	fucA	HS_1451	-	L-fuculose phosphate aldolase
1459	 35.79	0	1639764..1640048	+	94	113461595	-	HS_1452	-	hypothetical protein
1460	 33.08	-1	1645935..1646738	-	267	113461596	murI	HS_1453	-	glutamate racemase
1461	 39.63	0	1646808..1648889	-	693	113461597	recG	HS_1454	-	ATP-dependent DNA helicase
1462	 39.31	0	1648889..1651012	-	707	113461598	spoT	HS_1455	-	guanosine-3'5'-bis(diphosphate) 3'- pyrophosphohydrolase
1463	 37.36	0	1651093..1651365	-	90	113461599	rpoZ	HS_1456	-	DNA-directed RNA polymerase subunit omega
1464	 34.90	0	1651420..1652058	-	212	113461600	gmk	HS_1457	-	guanylate kinase
1465	 31.46	-1	1652155..1652955	-	266	113461601	licD	HS_1458	-	lipopolysaccharide choline phosphotransferase
1466	 27.47	-2	1652957..1653655	-	232	113461602	licC	HS_1459	-	LicC protein
1467	 29.69	-2	1653652..1654584	-	310	113461603	licB	HS_1460	-	lic-1 operon protein (LicB)
1468	 26.12	-2	1654571..1655374	-	267	113461604	licA	HS_1461	-	LicA protein
1469	 46.35	+2	1656140..1656331	+	63	113461605	-	HS_1464	-	hypothetical protein
1470	 44.76	+2	1656163..1656372	+	69	113461606	-	HS_1465	-	hypothetical protein
1471	 38.51	0	1656605..1657609	+	334	113461607	gapA	HS_1466	-	glyceraldehyde-3-phosphate dehydrogenase
1472	 38.68	0	1657785..1658252	-	155	113461608	nrdG	HS_1467	-	anaerobic ribonucleotide reductase-activating protein
1473	 37.14	0	1658268..1660394	-	708	113461609	nrdD	HS_1468	-	anaerobic ribonucleoside triphosphate reductase
1474	 35.61	0	1660679..1662475	-	598	113461610	-	HS_1469	-	ABC transporter, ATP-binding/permease protein
1475	 38.94	0	1662669..1664327	+	552	113461611	-	HS_1470	-	hypothetical protein
37.21	MEAN

3.48	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.