IslandPathversion 1.0

IslandPath Analysis: Haemophilus somnus 129PT



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 37.21 STD DEV: 3.48
Haemophilus somnus 129PT, complete genome - 1..2007700
1792 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1294	 37.47	0	1475568..1476776	-	402	113461430	oapA	HS_1287	-	opacity associated protein A
1295	 35.40	0	1476826..1477839	-	337	113461431	-	HS_1288	-	L-lysine 2,3-aminomutase
1296	 40.39	0	1477875..1478441	+	188	113461432	efp	HS_1289	-	elongation factor P
1297	 38.92	0	1478488..1479417	-	309	113461433	dusC	HS_1290	-	tRNA-dihydrouridine synthase C
1298	 38.28	0	1479422..1480291	-	289	113461434	djlA	HS_1291	-	DNA-J like membrane chaperone protein
1299	 42.68	+1	1480384..1481100	-	238	113461435	rph	HS_1292	-	ribonuclease PH
1300	 39.00	0	1481221..1482084	+	287	113461436	-	HS_1293	-	hypothetical protein
1301	 35.01	0	1482093..1482926	+	277	113461437	-	HS_1294	-	aminomethyl transferase
1302	 40.42	0	1482970..1484295	-	441	113461438	srmB	HS_1295	-	ATP-dependent RNA helicase SrmB
1303	 35.86	0	1484389..1485099	+	236	113461439	-	HS_1296	-	SAM-dependent methyltransferase
1304	 38.17	0	1485116..1485694	-	192	113461440	-	HS_1297	-	acyl-phosphate glycerol-3-phosphate acyltransferase
1305	 35.50	0	1485793..1486161	+	122	113461441	folB	HS_1298	-	dihydroneopterin aldolase
1306	 37.10	0	1486210..1487085	-	291	113461442	xerC	HS_1299	-	site-specific tyrosine recombinase XerC
1307	 38.98	0	1487393..1488277	+	294	113461443	psd	HS_1300	-	phosphatidylserine decarboxylase
1308	 39.18	0	1488304..1488936	+	210	113461444	fklB	HS_1301	-	FKBP-type peptidyl-prolyl cis-trans isomerase
1309	 37.66	0	1489174..1491093	+	639	113461445	-	HS_1302	-	ABC transporter, ATP-binding protein
1310	 39.70	0	1491217..1492284	+	355	113461446	recA	HS_1303	-	recombinase A
1311	 34.41	0	1492393..1492857	+	154	113461447	recX	HS_1304	-	recombination regulator RecX
1312	 39.39	0	1492960..1494675	+	571	113461448	proS	HS_1305	-	prolyl-tRNA synthetase
1313	 44.40	+2	1494813..1496891	+	692	113461449	frpB	HS_1306	-	iron-regulated outer membrane protein
1314	 37.63	0	1497083..1498270	+	395	113461450	tyrS	HS_1307	-	tyrosyl-tRNA synthetase
1315	 40.43	0	1498316..1498921	-	201	113461451	recR	HS_1308	-	recombination protein RecR
1316	 40.00	0	1498984..1499313	-	109	113461452	-	HS_1309	-	hypothetical protein
1317	 37.81	0	1499439..1501337	+	632	113461453	topB	HS_1310	-	DNA topoisomerase III
1318	 39.13	0	1501475..1501819	+	114	113461454	secG	HS_1311	-	preprotein translocase subunit SecG
1319	 36.62	0	1502393..1503334	-	313	113461455	secF	HS_1312	-	preprotein translocase subunit SecF
1320	 37.44	0	1503374..1505224	-	616	113461456	secD	HS_1313	-	preprotein translocase subunit SecD
1321	 33.70	-1	1505256..1505525	-	89	113461457	yajC	HS_1314	-	preprotein translocase subunit YajC
1322	 38.64	0	1505711..1506841	-	376	113461458	tgt	HS_1315	-	queuine tRNA-ribosyltransferase
1323	 39.68	0	1506892..1507962	-	356	113461459	queA	HS_1316	-	S-adenosylmethionine:tRNA ribosyltransferase-isomerase
1324	 36.49	0	1508094..1509362	-	422	113461460	dctM	HS_1317	-	C4-dicarboxylate transport system, large subunit (permease)
1325	 31.13	-1	1509380..1509832	-	150	113461461	dctQ	HS_1318	-	C4-dicarboxylate transport system, small subunit
1326	 32.59	-1	1509829..1510899	-	356	113461462	dctP	HS_1319	-	C4-dicarboxylate transport system, C4-dicarboxylate-binding protein
1327	 39.51	0	1511236..1511850	-	204	113461463	-	HS_1320	-	hypothetical protein
1328	 35.16	0	1512130..1512402	+	90	113461464	-	HS_1321	-	hypothetical protein
1329	 29.10	-2	1512411..1512599	+	62	113461465	-	HS_1322	-	hypothetical protein
1330	 37.18	0	1512910..1514286	-	458	113461466	prtC	HS_1323	-	collagenase prtC
1331	 34.07	0	1514428..1515237	-	269	113461467	ligA	HS_1324	-	DNA ligase
1332	 38.93	0	1515405..1516940	-	511	113461468	engA	HS_1325	-	GTP-binding protein EngA
1333	 35.58	0	1517071..1517604	-	177	113461469	-	HS_1326	-	hypothetical protein
1334	 37.47	0	1517751..1519103	+	450	113461470	pmbA	HS_1327	-	antibiotic maturation factor
1335	 39.11	0	1519169..1520467	-	432	113461471	purA	HS_1328	-	adenylosuccinate synthetase
1336	 38.10	0	1520967..1521995	+	342	113461472	kdgK	HS_1329	-	2-keto-3-deoxygluconate kinase
1337	 37.13	0	1522017..1523807	+	596	113461473	uidA	HS_1330	-	beta-D-glucuronidase
1338	 38.69	0	1525271..1525699	-	142	113461474	-	HS_1331	-	hypothetical protein
1339	 28.89	-2	1525748..1525927	-	59	113461475	-	HS_1332	-	hypothetical protein
1340	 36.64	0	1525943..1526275	-	110	113461476	-	HS_1333	-	hypothetical protein
1341	 34.59	0	1526268..1526666	-	132	113461477	-	HS_1334	-	terminase small subunit
1342	 40.58	0	1526741..1526947	-	68	113461478	-	HS_1335	-	prophage CP4-57 regulatory protein
1343	 27.49	-2	1527311..1528012	-	233	113461479	-	HS_1336	-	hypothetical protein
1344	 39.14	0	1528094..1529350	-	418	113461480	int	HS_1337	-	integrase
1345	 37.22	0	1530177..1530716	-	179	113461481	-	HS_1338	-	hypothetical protein
1346	 41.04	+1	1531121..1532470	+	449	113461482	gdhA	HS_1339	-	glutamate dehydrogenase
1347	 36.23	0	1532664..1533491	+	275	113461483	-	HS_1340	-	hypothetical protein
1348	 38.44	0	1533632..1534258	+	208	113461484	upp	HS_1341	-	uracil phosphoribosyltransferase
1349	 40.98	+1	1534360..1535601	+	413	113461485	uraA	HS_1342	-	uracil permease
1350	 30.89	-1	1535688..1536383	+	231	113461486	-	HS_1343	-	DNA replication initiation factor
1351	 34.88	0	1536501..1536824	-	107	113461487	trxA	HS_1344	-	thioredoxin
1352	 37.57	0	1536989..1538098	-	369	113461488	metB	HS_1345	-	cystathionine gamma-synthase
1353	 40.48	0	1538796..1539662	+	288	113461489	-	HS_1346	-	chromosome partitioning-related protein
1354	 41.98	+1	1539655..1541031	+	458	113461490	dnaB	HS_1347	-	replicative DNA helicase
1355	 40.07	0	1541021..1542727	+	568	113461491	-	HS_1348	-	hypothetical protein
1356	 37.77	0	1543110..1543763	+	217	113461492	-	HS_1349	-	hypothetical protein
1357	 36.82	0	1543827..1544285	+	152	113461493	mgsA	HS_1350	-	methylglyoxal synthase
1358	 32.18	-1	1544310..1546475	+	721	113461494	-	HS_1351	-	hypothetical protein
1359	 35.90	0	1546477..1546983	-	168	113461495	-	HS_1352	-	hypothetical protein
1360	 35.95	0	1547068..1548021	+	317	113461496	-	HS_1353	-	N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
1361	 32.48	-1	1548092..1549144	-	350	113461497	-	HS_1354	-	permease
1362	 37.76	0	1549144..1549482	-	112	113461498	glnB	HS_1355	-	nitrogen regulatory protein p-II
1363	 40.17	0	1549525..1550109	-	194	113461499	mogA	HS_1356	-	molybdenum cofactor biosynthesis protein
1364	 39.47	0	1550170..1550805	-	211	113461500	rnhB	HS_1357	-	ribonuclease HII
1365	 37.78	0	1550806..1551975	-	389	113461501	lpxB	HS_1358	-	lipid-A-disaccharide synthase
1366	 38.91	0	1552058..1552846	-	262	113461502	lpxA	HS_1359	-	UDP-N-acetylglucosamine acyltransferase
1367	 37.94	0	1552860..1553315	-	151	113461503	fabZ	HS_1360	-	3-hydroxyacyl-[acyl-carrier-protein] dehydratase
1368	 31.67	-1	1553399..1554358	-	319	113461504	-	HS_1361	-	hypothetical protein
1369	 40.52	0	1554396..1555730	-	444	113461505	argG	HS_1362	-	argininosuccinate synthase
1370	 39.47	0	1555823..1556653	-	276	113461506	-	HS_1363	-	hypothetical protein
1371	 38.42	0	1556720..1557565	-	281	113461507	purC	HS_1364	-	phosphoribosylaminoimidazole-succinocarboxamide synthase
1372	 38.60	0	1558147..1558773	-	208	113461508	-	HS_1365	-	hypothetical protein
1373	 42.88	+1	1558773..1559306	-	177	113461509	-	HS_1366	-	hypothetical protein
1374	 42.90	+1	1559325..1560641	-	438	113461510	-	HS_1367	-	hypothetical protein
1375	 39.62	0	1560645..1560962	-	105	113461511	-	HS_1368	-	hypothetical protein
1376	 40.87	+1	1560979..1562226	-	415	113461512	-	HS_1369	-	hypothetical protein
1377	 45.61	+2	1562322..1562606	-	94	113461513	-	HS_1370	-	hypothetical protein
1378	 48.82	+2	1562582..1563130	-	182	113461514	-	HS_1371	-	hypothetical protein
1379	 44.78	+2	1563261..1565549	-	762	113461515	-	HS_1372	-	phage-related tail fiber protein
1380	 42.12	+1	1565542..1567521	-	659	113461516	-	HS_1373	-	hypothetical protein
1381	 35.56	0	1567585..1568034	-	149	113461517	-	HS_1374	-	hypothetical protein
1382	 42.31	+1	1568244..1568633	-	129	113461518	-	HS_1375	-	hypothetical protein
1383	 37.81	0	1568630..1569076	-	148	113461519	-	HS_1376	-	hypothetical protein
1384	 43.27	+1	1569138..1570133	-	331	113461520	-	HS_1377	-	hypothetical protein
1385	 43.17	+1	1570159..1571022	-	287	113461521	-	HS_1378	-	hypothetical protein
1386	 31.69	-1	1571100..1571282	-	60	113461522	-	HS_1379	-	hypothetical protein
1387	 40.26	0	1571380..1571682	-	100	113461523	-	HS_1380	-	transcription regulator
1388	 41.01	+1	1572189..1580201	-	2670	113461524	-	HS_1381	-	hypothetical protein
1389	 39.79	0	1580282..1580668	-	128	113461525	-	HS_1382	-	phage-related protein
1390	 36.69	0	1580465..1580851	+	128	113461526	-	HS_1383	-	hypothetical protein
1391	 42.09	+1	1581207..1583273	-	688	113461527	-	HS_1384	-	hypothetical protein
1392	 41.54	+1	1583386..1584933	-	515	113461528	-	HS_1385	-	hypothetical protein
1393	 38.79	0	1584933..1585628	-	231	113461529	-	HS_1386	-	terminase small subunit
37.21	MEAN

3.48	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.