IslandPath Analysis: Haloarcula marismortui ATCC 43049



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).



No rRNA data available

A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 57.96   STD DEV: 3.96
Haloarcula marismortui ATCC 43049 chromosome II, complete sequence - 1..288050
281 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
40	 62.56	+1	40791..41813	-	340	55380114	tnp	rrnB0046	-	phage integrase
41	 61.47	0	42261..42587	+	108	55380115	-	rrnB0047	-	hypothetical protein
42	 58.62	0	42593..43462	+	289	55380116	apbE	rrnB0049	-	thiamine biosynthesis protein
43	 56.25	0	43446..43733	+	95	55380117	-	rrnB0050	-	hypothetical protein
44	 58.56	0	43733..44275	+	180	55380118	-	rrnB0051	-	hypothetical protein
45	 60.54	0	44272..44793	-	173	55380119	-	rrnB0052	-	regulatory protein
46	 56.94	0	44797..45084	-	95	55380120	-	rrnB0053	-	hypothetical protein
47	 53.14	-1	45423..45947	-	174	55380121	-	rrnB0055	-	hypothetical protein
48	 55.42	0	46040..46546	-	168	55380122	-	rrnB0056	-	hypothetical protein
49	 57.18	0	46543..46911	-	122	55380123	-	rrnB0058	-	hypothetical protein
50	 62.75	+1	47266..47367	-	33	55380124	-	rrnB0059	-	hypothetical protein
51	 57.84	0	47958..48059	-	33	55380125	-	rrnB0060	-	hypothetical protein
52	 56.52	0	48308..48790	-	160	55380126	-	rrnB0061	-	hypothetical protein
53	 52.58	-1	48783..49655	-	290	55380127	parA3	rrnB0062	-	ParA family chromosome partitioning ATPase
54	 50.20	-1	50205..51485	-	426	55380128	cdc6a	rrnB0063	-	cell division control protein 6 homolog 1
55	 59.50	0	52430..52750	+	106	55380129	-	rrnB0064	-	hypothetical protein
56	 60.73	0	52808..53632	+	274	55380130	-	rrnB0065	-	hypothetical protein
57	 55.48	0	53886..56192	-	768	55380131	-	rrnB0067	-	hypothetical protein
58	 59.55	0	56269..57210	-	313	55380132	-	rrnB0068	-	hypothetical protein
59	 56.67	0	57227..57706	-	159	55380133	-	rrnB0069	-	hypothetical protein
60	 59.09	0	57706..59499	-	597	55380134	speE	rrnB0070	-	spermidine synthase
61	 61.83	0	61341..62249	+	302	55380135	-	rrnB0071	-	hypothetical protein
62	 53.85	-1	62373..62684	-	103	55380137	-	rrnB0073	-	hypothetical protein
63	 57.10	0	62674..64074	+	466	55380136	-	rrnB0075	-	glycosyl transferase
64	 57.45	0	62686..63108	-	140	55380138	-	rrnB0074	-	transcription regulator
65	 50.33	-1	64267..64419	-	50	55380139	-	rrnB0077	-	hypothetical protein
66	 54.90	0	64483..64686	+	67	55380140	-	rrnB0076	-	hypothetical protein
67	 55.56	0	65040..65192	+	50	55380141	-	rrnB0078	-	hypothetical protein
68	 58.59	0	65459..66040	+	193	55380142	-	rrnB0079	-	hypothetical protein
69	 61.18	0	66104..67123	+	339	55380143	-	rrnB0080	-	hypothetical protein
70	 51.42	-1	67124..67615	-	163	55380144	-	rrnB0081	-	hypothetical protein
71	 52.03	-1	67605..67850	-	81	55380145	-	rrnB0082	-	hypothetical protein
72	 55.65	0	68603..69346	-	247	55380146	ski-1	rrnB0083	-	putative 2-component system sensor kinase
73	 58.12	0	69441..69791	+	116	55380147	-	rrnB0084	-	hypothetical protein
74	 53.75	-1	69788..70120	+	110	55380148	-	rrnB0085	-	hypothetical protein
75	 57.71	0	70117..70395	+	92	55380149	-	rrnB0086	-	hypothetical protein
76	 60.09	0	70479..71132	+	217	55380150	ski-2	rrnB0087	-	sensor protein
77	 58.63	0	71132..71467	+	111	55380151	-	rrnB0089	-	transcription regulator
78	 59.29	0	72599..74197	-	532	55380152	aldY7	rrnB0092	-	aldehyde dehydrogenase
79	 51.09	-1	74444..75040	+	198	55380153	-	rrnB0093	-	hypothetical protein
80	 52.55	-1	75104..75925	+	273	55380154	tnp	rrnB0094	-	putative transposase
81	 60.36	0	76399..77919	+	506	55380155	aldY6	rrnB0095	-	aldehyde dehydrogenase
82	 58.94	0	77913..79853	-	646	55380156	-	rrnB0096	-	hypothetical protein
83	 59.20	0	80167..80688	+	173	55380157	hcp7	rrnB0097	-	halocyanin precursor-like
84	 59.79	0	80863..81705	+	280	55380158	-	rrnB0098	-	hypothetical protein
85	 60.32	0	81785..81910	+	41	55380159	-	rrnB0099	-	hypothetical protein
86	 59.76	0	82068..82313	+	81	55380160	-	rrnB0100	-	hypothetical protein
87	 59.40	0	82920..83717	+	265	55380161	suhB2	rrnB0102	-	inositol-1-monophosphatase
88	 61.12	0	83847..85181	+	444	55380162	rbsB-3	rrnB0103	-	putative ABC transporter substrate binding protein
89	 63.01	+1	85206..86108	+	300	55380163	malFG-9	rrnB0104	-	sugar ABC transport system permease protein
90	 63.28	+1	86110..87024	+	304	55380164	malFG-10	rrnB0105	-	sugar ABC transporter permease protein
91	 61.32	0	87080..88219	+	379	55380165	ugpC2	rrnB0106	-	sugar ABC transporter ATP-binding subunit
92	 60.11	0	88301..89779	+	492	55380166	-	rrnB0107	-	putative carbbohydrate responsive phospholipase
93	 60.23	0	90062..90931	-	289	55380167	-	rrnB0108	-	hypothetical protein
94	 61.03	0	91203..91415	-	70	55380168	-	rrnB0109	-	hypothetical protein
95	 62.33	+1	91415..91714	-	99	55380169	-	rrnB0111	-	hypothetical protein
96	 63.24	+1	92322..92642	-	106	55380170	-	rrnB0112	-	DNA binding domain-containing protein
97	 54.10	0	92942..94501	-	519	55380171	gatA2	rrnB0113	-	amidase
98	 52.84	-1	94742..95023	-	93	55380172	-	rrnB0114	-	hypothetical protein
99	 58.51	0	95726..96154	+	142	55380173	-	rrnB0115	-	hypothetical protein
100	 50.11	-1	97447..97905	+	152	55380174	-	rrnB0116	-	hypothetical protein
101	 60.00	0	98333..99292	-	319	55380175	-	rrnB0117	-	hypothetical protein
102	 57.05	0	99365..100009	-	214	55380176	-	rrnB0118	-	hypothetical protein
103	 57.58	0	100348..100644	+	98	55380177	-	rrnB0120	-	hypothetical protein
104	 49.61	-2	100840..100968	+	42	55380178	-	rrnB0121	-	hypothetical protein
105	 58.11	0	101012..102004	-	330	55380179	tnp	rrnB0122	-	transposase for insertion sequence element ISH11
106	 61.48	0	102346..102615	+	89	55380180	-	rrnB0123	-	hypothetical protein
107	 58.73	0	102616..102867	+	83	55380181	-	rrnB0124	-	hypothetical protein
108	 62.35	+1	103188..103604	+	138	55380182	-	rrnB0127	-	hypothetical protein
109	 65.22	+1	103674..103811	+	45	55380183	-	rrnB0129	-	hypothetical protein
110	 52.38	-1	104094..104303	+	69	55380184	-	rrnB0130	-	hypothetical protein
111	 54.24	0	104269..104622	-	117	55380185	-	rrnB0132	-	hypothetical protein
112	 51.75	-1	105231..107321	+	696	55380186	-	rrnB0133	-	putative redox sensing protein
113	 58.84	0	107457..107954	+	165	55380187	-	rrnB0134	-	hypothetical protein
114	 56.85	0	107962..108450	+	162	55380188	-	rrnB0136	-	hypothetical protein
115	 56.62	0	108664..109131	-	155	55380189	-	rrnB0137	-	hypothetical protein
116	 58.25	0	109620..109916	+	98	55380190	-	rrnB0138	-	hypothetical protein
117	 57.18	0	110062..110430	+	122	55380191	-	rrnB0140	-	hypothetical protein
118	 54.90	0	111730..112086	+	118	55380192	-	rrnB0142	-	hypothetical protein
119	 56.16	0	112086..112304	+	72	55380193	tnp	rrnB0143	-	transposase
120	 58.48	0	112362..112874	+	170	55380194	-	rrnB0145	-	hypothetical protein
121	 56.01	0	113148..114095	+	315	55380195	tnp	rrnB0146	-	putative ISH8 transposase
122	 55.25	0	114675..114893	+	72	55380196	-	rrnB0147	-	hypothetical protein
123	 58.60	0	115275..115646	+	123	55380197	tfbC	rrnB0148	-	transcription initiation factor IIB
124	 53.20	-1	116194..116490	+	98	55380198	-	rrnB0151	-	hypothetical protein
125	 54.51	0	116480..116767	+	95	55380199	-	rrnB0152	-	hypothetical protein
126	 60.51	0	116746..117135	-	129	55380200	-	rrnB0154	-	hypothetical protein
127	 53.51	-1	117242..117682	+	146	55380201	-	rrnB0155	-	hypothetical protein
128	 47.56	-2	118051..120945	+	964	55380202	-	rrnB0156	-	putative light and redox sensing histidine kinase
129	 46.89	-2	121051..121323	+	90	55380203	-	rrnB0157	-	padR like DNA binding protein
130	 58.87	0	121381..121893	+	170	55380204	-	rrnB0158	-	hypothetical protein
131	 55.06	0	122268..122534	+	88	55380205	-	rrnB0160	-	hypothetical protein
132	 51.04	-1	122650..122937	+	95	55380206	-	rrnB0161	-	hypothetical protein
133	 59.15	0	123204..123509	-	101	55380207	-	rrnB0162	-	hypothetical protein
134	 54.07	0	123755..124405	-	216	55380208	-	rrnB0163	-	hypothetical protein
135	 56.95	0	124402..125616	-	404	55380209	-	rrnB0164	-	hypothetical protein
136	 56.36	0	126085..127200	-	371	55380210	-	rrnB0166	-	hypothetical protein
137	 56.84	0	127203..131891	-	1562	55380211	cbp	rrnB0167	-	calcium-binding protein-like
138	 57.70	0	131974..132876	+	300	55380212	-	rrnB0168	-	hypothetical protein
139	 60.00	0	133070..133219	+	49	55380213	-	rrnB0169	-	hypothetical protein
57.96	MEAN

3.96	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.