IslandPathversion 1.0

IslandPath Analysis: Haloarcula marismortui ATCC 43049



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
No rRNA data available A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 57.96 STD DEV: 3.96
Haloarcula marismortui ATCC 43049 chromosome II, complete sequence - 1..288050
281 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
179	 58.97	0	178153..178542	+	129	55380253	-	rrnB0215	-	thioesterase
180	 59.97	0	178596..180596	+	666	55380254	acs2	rrnB0217	-	acyl-coenzyme A synthetase
181	 60.12	0	180710..181381	-	223	55380255	npdG-2	rrnB0218	-	F420-dependent NADP reductase
182	 60.13	0	181516..182877	-	453	55380256	gabD	rrnB0219	-	succinate-semialdehyde dehydrogenase
183	 57.50	0	182982..183701	+	239	55380257	-	rrnB0220	-	hypothetical protein
184	 57.44	0	183703..184287	+	194	55380258	-	rrnB0221	-	putative metal dependent phosphohydrolase
185	 56.18	0	185612..186364	+	250	55380259	kdgR2	rrnB0222	-	transcription regulator KdgR
186	 58.23	0	186622..187344	-	240	55380260	livF-9	rrnB0224	-	branched-chain amino acid ABC transporter ATP-binding protein
187	 57.25	0	187341..188105	-	254	55380261	livG-10	rrnB0225	-	branched-chain amino acid ABC transporter ATP-binding protein
188	 58.91	0	188098..190122	-	674	55380262	livH-9	rrnB0227	-	branched-chain amino acid ABC transporter permease protein
189	 61.14	0	190131..191378	-	415	55380263	-	rrnB0228	-	hypothetical protein
190	 60.06	0	191508..193460	-	650	55380264	pga-1	rrnB0229	-	penicillin acylase
191	 60.87	0	193668..194357	-	229	55380265	pga-2	rrnB0230	-	penicillin G amidase
192	 58.82	0	194565..195851	-	428	55380266	paaK2	rrnB0231	-	phenylacetyl-CoA ligase
193	 59.87	0	196066..196536	+	156	55380267	-	rrnB0232	-	hypothetical protein
194	 59.02	0	196595..196921	-	108	55380269	-	rrnB0234	-	hypothetical protein
195	 57.97	0	196920..197804	+	294	55380268	iclR	rrnB0235	-	transcriptional regulator
196	 61.25	0	197910..198722	-	270	55380270	ech4	rrnB0237	-	enoyl-CoA hydratase
197	 59.91	0	198719..199606	-	295	55380271	hbd3	rrnB0238	-	3-hydroxyacyl-CoA dehydrogenase
198	 63.79	+1	199703..200848	+	381	55380272	aca1	rrnB0240	-	acetyl-CoA acetyltransferase
199	 65.62	+1	200855..202291	-	478	55380273	acaA	rrnB0241	-	acyl carrier protein synthase
200	 61.54	0	202288..203574	-	428	55380274	acaB2	rrnB0242	-	3-ketoacyl-CoA thiolase
201	 57.98	0	203593..204882	+	429	55380275	paaK1	rrnB0243	-	phenylacetyl-coenzyme A ligase
202	 58.33	0	204886..205281	-	131	55380276	paaI	rrnB0244	-	phenylacetic acid degradation protein PaaI
203	 57.73	0	205380..205838	+	152	55380277	maoC2	rrnB0245	-	monoamine oxidase regulatory protein
204	 62.53	+1	205986..207437	+	483	55380278	aldY5	rrnB0246	-	aldehyde dehydrogenase
205	 58.93	0	207548..207715	-	55	55380279	-	rrnB0247	-	hypothetical protein
206	 61.84	0	207712..208146	-	144	55380280	-	rrnB0248	-	hypothetical protein
207	 60.43	0	208139..208972	-	277	55380281	paaC	rrnB0249	-	phenylacetic acid degradation protein PaaC
208	 60.04	0	208972..209499	-	175	55380282	pacF	rrnB0250	-	PacF protein
209	 57.28	0	209505..210569	-	354	55380284	paaA	rrnB0252	-	phenylacetate-CoA oxygenase subunit PaaA
210	 59.39	0	210523..211209	+	228	55380283	boa-12	rrnB0253	-	transcription regulator
211	 62.86	+1	211283..212044	+	253	55380285	ech6	rrnB0254	-	enoyl-CoA hydratase
212	 60.00	0	212041..212820	-	259	55380286	-	rrnB0255	-	amidohydrolase
213	 61.94	+1	213077..213964	+	295	55380287	citE2	rrnB0257	-	citrate lyase beta chain
214	 62.79	+1	214007..214729	+	240	55380288	fapS	rrnB0259	-	cyclopropane-fatty-acyl-phospholipid synthase
215	 57.85	0	214771..215235	-	154	55380289	maoC3	rrnB0260	-	molybdenum cofactor biosynthesis protein
216	 60.56	0	215239..216957	-	572	55380290	pccB	rrnB0261	-	propionyl-CoA carboxylase beta subunit
217	 62.58	+1	216960..218744	-	594	55380291	accC1	rrnB0263	-	carbamoyl phosphate synthase L chain
218	 60.33	0	218744..219910	-	388	55380292	acdH	rrnB0264	-	acyl-CoA dehydrogenase
219	 59.21	0	219956..221806	-	616	55380293	acs4	rrnB0265	-	acyl-coenzyme A synthetase
220	 62.71	+1	221809..222819	-	336	55380294	-	rrnB0266	-	hypothetical protein
221	 62.48	+1	223209..224714	-	501	55380295	ubiD	rrnB0267	-	3-octaprenyl-4-hydroxybenzoate carboxy-lyase
222	 60.20	0	224718..225212	-	164	55380296	-	rrnB0268	-	hypothetical protein
223	 65.22	+1	225595..226353	+	252	55380297	-	rrnB0269	-	hypothetical protein
224	 63.82	+1	226413..228833	+	806	55380298	zntA2	rrnB0270	-	zinc-transporting ATPase
225	 59.16	0	228967..230205	-	412	55380299	-	rrnB0271	-	hypothetical protein
226	 59.71	0	230425..231990	-	521	55380300	-	rrnB0272	-	hypothetical protein
227	 57.96	0	232171..232710	+	179	55380301	-	rrnB0273	-	hypothetical protein
228	 64.89	+1	232775..233056	-	93	55380302	-	rrnB0274	-	hypothetical protein
229	 59.25	0	233255..234319	+	354	55380303	-	rrnB0275	-	putative-iron binding protein
230	 61.80	0	234644..235054	+	136	55380304	trxA5	rrnB0277	-	thioredoxin
231	 62.22	+1	235275..235499	+	74	55380305	-	rrnB0278	-	hypothetical protein
232	 61.65	0	235622..236020	-	132	55380306	-	rrnB0280	-	hypothetical protein
233	 63.96	+1	236032..237177	-	381	55380307	-	rrnB0281	-	hypothetical protein
234	 59.84	0	237174..237422	-	82	55380308	-	rrnB0282	-	hypothetical protein
235	 63.57	+1	237747..238457	-	236	55380309	guaA4	rrnB0283	-	GMP synthase
236	 61.61	0	238499..239071	-	190	55380310	-	rrnB0284	-	hypothetical protein
237	 58.13	0	239073..239318	-	81	55380311	-	rrnB0285	-	hypothetical protein
238	 64.17	+1	239568..240809	+	413	55380312	-	rrnB0286	-	hypothetical protein
239	 66.46	+2	240816..241307	+	163	55380313	-	rrnB0287	-	hypothetical protein
240	 67.09	+2	241307..241777	+	156	55380314	-	rrnB0288	-	hypothetical protein
241	 67.51	+2	241797..242978	+	393	55380315	phoT1	rrnB0290	-	sodium-dependent phosphate transporter
242	 62.38	+1	242988..243827	-	279	55380316	usp27	rrnB0291	-	universal stress protein
243	 64.20	+1	244206..244367	+	53	55380317	-	rrnB0292	-	hypothetical protein
244	 62.49	+1	244371..245399	+	342	55380318	-	rrnB0294	-	hypothetical protein
245	 57.28	0	245576..247567	+	663	55380319	-	rrnB0295	-	GAF only light sensing his kinase
246	 56.86	0	247693..248793	-	366	55380320	kinA2	rrnB0296	-	signal-transducing histidine kinase-like
247	 55.48	0	248786..249223	-	145	55380321	rre-2	rrnB0297	-	two-component response regulator
248	 59.63	0	249216..255131	-	1971	55380322	oye	rrnB0299	-	light and oxygen sensing histidine kinase
249	 57.41	0	255128..256024	-	298	55380323	hlx2	rrnB0301	-	HoxA-like transcriptional regulator
250	 57.88	0	256017..256517	-	166	55380324	rre-3	rrnB0302	-	response regulator
251	 58.04	0	257094..258368	+	424	55380325	tnp	rrnB0303	-	putative ISH8 transposase
252	 59.17	0	258660..259739	+	359	55380326	-	rrnB0304	-	hypothetical protein
253	 59.42	0	259758..260033	-	91	55380327	-	rrnB0305	-	hypothetical protein
254	 54.17	0	260220..260507	+	95	55380328	-	rrnB0306	-	hypothetical protein
255	 58.31	0	260744..261700	+	318	55380329	-	rrnB0307	-	hypothetical protein
256	 68.06	+2	261795..262226	-	143	55380330	-	rrnB0308	-	hypothetical protein
257	 68.21	+2	262223..263392	-	389	55380331	acaB1	rrnB0309	-	3-ketoacyl-CoA thiolase
258	 61.11	0	263631..264854	-	407	55380332	fmn	rrnB0310	-	FMN oxidoreductase protein
259	 59.77	0	265039..266400	+	453	55380333	ugpB	rrnB0311	-	glycerol-3-phosphate-binding protein
260	 59.44	0	266400..267284	+	294	55380334	ugpA	rrnB0312	-	ABC transporter permease protein
261	 59.63	0	267265..268188	+	307	55380335	ugpE	rrnB0314	-	sn-glycerol-3-phosphate transport system permease
262	 59.74	0	268198..269337	+	379	55380336	msmX-3	rrnB0315	-	sugar ABC transporter ATP-binding protein
263	 55.90	0	269631..270587	+	318	55380337	glpQ1	rrnB0316	-	glycerophosphoryl diester phosphodiesterase
264	 55.01	0	270647..271435	-	262	55380338	araL2	rrnB0317	-	L-arabinose operon protein AraL
265	 55.53	0	271557..272858	-	433	55380339	mgtC2	rrnB0318	-	magnesium transporter accessory protein
266	 58.55	0	273159..274328	+	389	55380340	phnD1	rrnB0319	-	ABC tranporter phosphate-binding protein
267	 57.48	0	274344..275159	+	271	55380341	phnC2	rrnB0320	-	phosphonates ABC transporter ATP-binding protein
268	 56.13	0	275165..275980	+	271	55380342	phnE	rrnB0321	-	phosphonates ABC tranporter permease protein
269	 57.74	0	275980..276774	+	264	55380343	phnD2	rrnB0322	-	phosphonates ABC transporter permease protein
270	 58.43	0	277927..278436	-	169	55380344	-	rrnB0323	-	hypothetical protein
271	 63.63	+1	278566..279651	-	361	55380345	pqsH	rrnB0324	-	hypothetical protein
272	 61.74	0	279737..281014	+	425	55380346	ftsZ2	rrnB0325	-	cell division protein
273	 61.47	0	281185..282549	+	454	55380347	cpdB1	rrnB0326	-	2', 3'-cyclic nucleotide 2'-phosphodiesterase
274	 51.53	-1	282576..283097	-	173	55380348	-	rrnB0327	-	hypothetical protein
275	 55.75	0	283468..283641	+	57	55380349	-	rrnB0328	-	hypothetical protein
276	 52.78	-1	284164..284487	+	107	55380350	-	rrnB0330	-	hypothetical protein
277	 57.51	0	285284..285556	-	90	55380351	-	rrnB0331	-	hypothetical protein
278	 57.35	0	285591..285794	-	67	55380352	-	rrnB0333	-	hypothetical protein
57.96	MEAN

3.96	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.