IslandPath Analysis: Haloarcula marismortui ATCC 43049



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).



No rRNA data available

A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 57.96   STD DEV: 3.96
Haloarcula marismortui ATCC 43049 chromosome II, complete sequence - 1..288050
281 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
90	 63.28	+1	86110..87024	+	304	55380164	malFG-10	rrnB0105	-	sugar ABC transporter permease protein
91	 61.32	0	87080..88219	+	379	55380165	ugpC2	rrnB0106	-	sugar ABC transporter ATP-binding subunit
92	 60.11	0	88301..89779	+	492	55380166	-	rrnB0107	-	putative carbbohydrate responsive phospholipase
93	 60.23	0	90062..90931	-	289	55380167	-	rrnB0108	-	hypothetical protein
94	 61.03	0	91203..91415	-	70	55380168	-	rrnB0109	-	hypothetical protein
95	 62.33	+1	91415..91714	-	99	55380169	-	rrnB0111	-	hypothetical protein
96	 63.24	+1	92322..92642	-	106	55380170	-	rrnB0112	-	DNA binding domain-containing protein
97	 54.10	0	92942..94501	-	519	55380171	gatA2	rrnB0113	-	amidase
98	 52.84	-1	94742..95023	-	93	55380172	-	rrnB0114	-	hypothetical protein
99	 58.51	0	95726..96154	+	142	55380173	-	rrnB0115	-	hypothetical protein
100	 50.11	-1	97447..97905	+	152	55380174	-	rrnB0116	-	hypothetical protein
101	 60.00	0	98333..99292	-	319	55380175	-	rrnB0117	-	hypothetical protein
102	 57.05	0	99365..100009	-	214	55380176	-	rrnB0118	-	hypothetical protein
103	 57.58	0	100348..100644	+	98	55380177	-	rrnB0120	-	hypothetical protein
104	 49.61	-2	100840..100968	+	42	55380178	-	rrnB0121	-	hypothetical protein
105	 58.11	0	101012..102004	-	330	55380179	tnp	rrnB0122	-	transposase for insertion sequence element ISH11
106	 61.48	0	102346..102615	+	89	55380180	-	rrnB0123	-	hypothetical protein
107	 58.73	0	102616..102867	+	83	55380181	-	rrnB0124	-	hypothetical protein
108	 62.35	+1	103188..103604	+	138	55380182	-	rrnB0127	-	hypothetical protein
109	 65.22	+1	103674..103811	+	45	55380183	-	rrnB0129	-	hypothetical protein
110	 52.38	-1	104094..104303	+	69	55380184	-	rrnB0130	-	hypothetical protein
111	 54.24	0	104269..104622	-	117	55380185	-	rrnB0132	-	hypothetical protein
112	 51.75	-1	105231..107321	+	696	55380186	-	rrnB0133	-	putative redox sensing protein
113	 58.84	0	107457..107954	+	165	55380187	-	rrnB0134	-	hypothetical protein
114	 56.85	0	107962..108450	+	162	55380188	-	rrnB0136	-	hypothetical protein
115	 56.62	0	108664..109131	-	155	55380189	-	rrnB0137	-	hypothetical protein
116	 58.25	0	109620..109916	+	98	55380190	-	rrnB0138	-	hypothetical protein
117	 57.18	0	110062..110430	+	122	55380191	-	rrnB0140	-	hypothetical protein
118	 54.90	0	111730..112086	+	118	55380192	-	rrnB0142	-	hypothetical protein
119	 56.16	0	112086..112304	+	72	55380193	tnp	rrnB0143	-	transposase
120	 58.48	0	112362..112874	+	170	55380194	-	rrnB0145	-	hypothetical protein
121	 56.01	0	113148..114095	+	315	55380195	tnp	rrnB0146	-	putative ISH8 transposase
122	 55.25	0	114675..114893	+	72	55380196	-	rrnB0147	-	hypothetical protein
123	 58.60	0	115275..115646	+	123	55380197	tfbC	rrnB0148	-	transcription initiation factor IIB
124	 53.20	-1	116194..116490	+	98	55380198	-	rrnB0151	-	hypothetical protein
125	 54.51	0	116480..116767	+	95	55380199	-	rrnB0152	-	hypothetical protein
126	 60.51	0	116746..117135	-	129	55380200	-	rrnB0154	-	hypothetical protein
127	 53.51	-1	117242..117682	+	146	55380201	-	rrnB0155	-	hypothetical protein
128	 47.56	-2	118051..120945	+	964	55380202	-	rrnB0156	-	putative light and redox sensing histidine kinase
129	 46.89	-2	121051..121323	+	90	55380203	-	rrnB0157	-	padR like DNA binding protein
130	 58.87	0	121381..121893	+	170	55380204	-	rrnB0158	-	hypothetical protein
131	 55.06	0	122268..122534	+	88	55380205	-	rrnB0160	-	hypothetical protein
132	 51.04	-1	122650..122937	+	95	55380206	-	rrnB0161	-	hypothetical protein
133	 59.15	0	123204..123509	-	101	55380207	-	rrnB0162	-	hypothetical protein
134	 54.07	0	123755..124405	-	216	55380208	-	rrnB0163	-	hypothetical protein
135	 56.95	0	124402..125616	-	404	55380209	-	rrnB0164	-	hypothetical protein
136	 56.36	0	126085..127200	-	371	55380210	-	rrnB0166	-	hypothetical protein
137	 56.84	0	127203..131891	-	1562	55380211	cbp	rrnB0167	-	calcium-binding protein-like
138	 57.70	0	131974..132876	+	300	55380212	-	rrnB0168	-	hypothetical protein
139	 60.00	0	133070..133219	+	49	55380213	-	rrnB0169	-	hypothetical protein
140	 56.21	0	133413..133565	+	50	55380214	-	rrnB0170	-	hypothetical protein
141	 52.57	-1	133828..134664	-	278	55380215	-	rrnB0171	-	putative acyltransferase
142	 57.79	0	134714..135220	-	168	55380216	-	rrnB0172	-	hypothetical protein
143	 51.13	-1	135649..136047	+	132	55380217	-	rrnB0173	-	hypothetical protein
144	 53.03	-1	136333..137403	-	356	55380218	imd2	rrnB0175	-	inosine monophosphate dehydrogenase
145	 54.11	0	137662..138306	-	214	55380219	-	rrnB0176	-	hypothetical protein
146	 54.92	0	138444..139328	-	294	55380220	-	rrnB0177	-	hypothetical protein
147	 59.56	0	140072..140662	-	196	55380221	-	rrnB0179	-	hypothetical protein
148	 63.52	+1	140768..140926	+	52	55380222	-	rrnB0178	-	hypothetical protein
149	 62.06	+1	141028..147948	-	2306	55380223	oye1	rrnB0180	-	light- and oxygen-sensing histidine kinase
150	 56.15	0	148264..148824	+	186	55380224	-	rrnB0181	-	hypothetical protein
151	 56.98	0	148869..149549	+	226	55380225	tnp	rrnB0183	-	transposase
152	 59.08	0	150203..150571	-	122	55380226	-	rrnB0184	-	hypothetical protein
153	 51.28	-1	150817..151011	+	64	55380227	-	rrnB0185	-	hypothetical protein
154	 59.02	0	151150..152025	+	291	55380228	-	rrnB0186	-	hypothetical protein
155	 61.31	0	152022..152450	+	142	55380229	-	rrnB0187	-	putative cupin
156	 63.72	+1	152450..153670	+	406	55380230	-	rrnB0188	-	hypothetical protein
157	 62.05	+1	153777..154166	-	129	55380231	-	rrnB0189	-	hypothetical protein
158	 61.17	0	154242..154550	-	102	55380232	-	rrnB0190	-	hypothetical protein
159	 52.92	-1	154830..155120	-	96	55380233	-	rrnB0191	-	hypothetical protein
160	 58.87	0	155461..156345	+	294	55380234	usp1	rrnB0192	-	universal stress protein 1
161	 53.73	-1	156429..157085	+	218	55380235	-	rrnB0193	-	hypothetical protein
162	 56.27	0	157169..157447	-	92	55380236	-	rrnB0195	-	hypothetical protein
163	 52.45	-1	158857..159060	-	67	55380237	-	rrnB0196	-	hypothetical protein
164	 55.02	0	159026..160459	-	477	55380238	lpdA3	rrnB0197	-	dihydrolipoamide dehydrogenase
165	 57.36	0	160459..162081	-	540	55380239	pdhC1	rrnB0198	-	branched-chain alpha-keto acid dehydrogenase subunit E2
166	 57.82	0	161990..163006	-	338	55380240	pdhB2	rrnB0199	-	pyruvate dehydrogenase
167	 58.22	0	163003..164151	-	382	55380241	pdhA2	rrnB0200	-	pyruvate dehydrogenase E1 component alpha subunit
168	 56.74	0	164818..165522	-	234	55380242	livF-8	rrnB0202	-	branched-chain amino acid ABC transporter ATP-binding protein
169	 54.71	0	165519..166421	-	300	55380243	livG-8	rrnB0203	-	branched-chain amino acid ABC transporter ATP-binding protein
170	 59.10	0	166339..167646	-	435	55380244	livM-7	rrnB0204	-	high-affinity branched-chain amino acid transport protein
171	 57.83	0	167643..168740	-	365	55380245	livH-8	rrnB0205	-	branched-chain amino acid ABC transporter permease protein
172	 57.73	0	169034..170152	-	372	55380246	aspC1	rrnB0206	-	aspartate aminotransferase
173	 57.19	0	170337..171581	-	414	55380247	-	rrnB0207	-	putative extracellular ligand binding protein
174	 54.55	0	172114..172212	-	32	55380248	-	rrnB0208	-	hypothetical protein
175	 61.56	0	172797..174500	+	567	55380249	ilvB3	rrnB0209	-	acetolactate synthase large subunit
176	 60.94	0	174562..175521	+	319	55380250	galE10	rrnB0210	-	UDP-glucose 4-epimerase
177	 61.07	0	175636..176904	+	422	55380251	pepB5	rrnB0212	-	aminopeptidase
178	 61.00	0	176991..177995	+	334	55380252	-	rrnB0214	-	luciferase monooxygenase
179	 58.97	0	178153..178542	+	129	55380253	-	rrnB0215	-	thioesterase
180	 59.97	0	178596..180596	+	666	55380254	acs2	rrnB0217	-	acyl-coenzyme A synthetase
181	 60.12	0	180710..181381	-	223	55380255	npdG-2	rrnB0218	-	F420-dependent NADP reductase
182	 60.13	0	181516..182877	-	453	55380256	gabD	rrnB0219	-	succinate-semialdehyde dehydrogenase
183	 57.50	0	182982..183701	+	239	55380257	-	rrnB0220	-	hypothetical protein
184	 57.44	0	183703..184287	+	194	55380258	-	rrnB0221	-	putative metal dependent phosphohydrolase
185	 56.18	0	185612..186364	+	250	55380259	kdgR2	rrnB0222	-	transcription regulator KdgR
186	 58.23	0	186622..187344	-	240	55380260	livF-9	rrnB0224	-	branched-chain amino acid ABC transporter ATP-binding protein
187	 57.25	0	187341..188105	-	254	55380261	livG-10	rrnB0225	-	branched-chain amino acid ABC transporter ATP-binding protein
188	 58.91	0	188098..190122	-	674	55380262	livH-9	rrnB0227	-	branched-chain amino acid ABC transporter permease protein
189	 61.14	0	190131..191378	-	415	55380263	-	rrnB0228	-	hypothetical protein
57.96	MEAN

3.96	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.