IslandPathversion 1.0

IslandPath Analysis: Haloarcula marismortui ATCC 43049



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
No rRNA data available A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 57.96 STD DEV: 3.96
Haloarcula marismortui ATCC 43049 chromosome II, complete sequence - 1..288050
281 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
68	 58.59	0	65459..66040	+	193	55380142	-	rrnB0079	-	hypothetical protein
69	 61.18	0	66104..67123	+	339	55380143	-	rrnB0080	-	hypothetical protein
70	 51.42	-1	67124..67615	-	163	55380144	-	rrnB0081	-	hypothetical protein
71	 52.03	-1	67605..67850	-	81	55380145	-	rrnB0082	-	hypothetical protein
72	 55.65	0	68603..69346	-	247	55380146	ski-1	rrnB0083	-	putative 2-component system sensor kinase
73	 58.12	0	69441..69791	+	116	55380147	-	rrnB0084	-	hypothetical protein
74	 53.75	-1	69788..70120	+	110	55380148	-	rrnB0085	-	hypothetical protein
75	 57.71	0	70117..70395	+	92	55380149	-	rrnB0086	-	hypothetical protein
76	 60.09	0	70479..71132	+	217	55380150	ski-2	rrnB0087	-	sensor protein
77	 58.63	0	71132..71467	+	111	55380151	-	rrnB0089	-	transcription regulator
78	 59.29	0	72599..74197	-	532	55380152	aldY7	rrnB0092	-	aldehyde dehydrogenase
79	 51.09	-1	74444..75040	+	198	55380153	-	rrnB0093	-	hypothetical protein
80	 52.55	-1	75104..75925	+	273	55380154	tnp	rrnB0094	-	putative transposase
81	 60.36	0	76399..77919	+	506	55380155	aldY6	rrnB0095	-	aldehyde dehydrogenase
82	 58.94	0	77913..79853	-	646	55380156	-	rrnB0096	-	hypothetical protein
83	 59.20	0	80167..80688	+	173	55380157	hcp7	rrnB0097	-	halocyanin precursor-like
84	 59.79	0	80863..81705	+	280	55380158	-	rrnB0098	-	hypothetical protein
85	 60.32	0	81785..81910	+	41	55380159	-	rrnB0099	-	hypothetical protein
86	 59.76	0	82068..82313	+	81	55380160	-	rrnB0100	-	hypothetical protein
87	 59.40	0	82920..83717	+	265	55380161	suhB2	rrnB0102	-	inositol-1-monophosphatase
88	 61.12	0	83847..85181	+	444	55380162	rbsB-3	rrnB0103	-	putative ABC transporter substrate binding protein
89	 63.01	+1	85206..86108	+	300	55380163	malFG-9	rrnB0104	-	sugar ABC transport system permease protein
90	 63.28	+1	86110..87024	+	304	55380164	malFG-10	rrnB0105	-	sugar ABC transporter permease protein
91	 61.32	0	87080..88219	+	379	55380165	ugpC2	rrnB0106	-	sugar ABC transporter ATP-binding subunit
92	 60.11	0	88301..89779	+	492	55380166	-	rrnB0107	-	putative carbbohydrate responsive phospholipase
93	 60.23	0	90062..90931	-	289	55380167	-	rrnB0108	-	hypothetical protein
94	 61.03	0	91203..91415	-	70	55380168	-	rrnB0109	-	hypothetical protein
95	 62.33	+1	91415..91714	-	99	55380169	-	rrnB0111	-	hypothetical protein
96	 63.24	+1	92322..92642	-	106	55380170	-	rrnB0112	-	DNA binding domain-containing protein
97	 54.10	0	92942..94501	-	519	55380171	gatA2	rrnB0113	-	amidase
98	 52.84	-1	94742..95023	-	93	55380172	-	rrnB0114	-	hypothetical protein
99	 58.51	0	95726..96154	+	142	55380173	-	rrnB0115	-	hypothetical protein
100	 50.11	-1	97447..97905	+	152	55380174	-	rrnB0116	-	hypothetical protein
101	 60.00	0	98333..99292	-	319	55380175	-	rrnB0117	-	hypothetical protein
102	 57.05	0	99365..100009	-	214	55380176	-	rrnB0118	-	hypothetical protein
103	 57.58	0	100348..100644	+	98	55380177	-	rrnB0120	-	hypothetical protein
104	 49.61	-2	100840..100968	+	42	55380178	-	rrnB0121	-	hypothetical protein
105	 58.11	0	101012..102004	-	330	55380179	tnp	rrnB0122	-	transposase for insertion sequence element ISH11
106	 61.48	0	102346..102615	+	89	55380180	-	rrnB0123	-	hypothetical protein
107	 58.73	0	102616..102867	+	83	55380181	-	rrnB0124	-	hypothetical protein
108	 62.35	+1	103188..103604	+	138	55380182	-	rrnB0127	-	hypothetical protein
109	 65.22	+1	103674..103811	+	45	55380183	-	rrnB0129	-	hypothetical protein
110	 52.38	-1	104094..104303	+	69	55380184	-	rrnB0130	-	hypothetical protein
111	 54.24	0	104269..104622	-	117	55380185	-	rrnB0132	-	hypothetical protein
112	 51.75	-1	105231..107321	+	696	55380186	-	rrnB0133	-	putative redox sensing protein
113	 58.84	0	107457..107954	+	165	55380187	-	rrnB0134	-	hypothetical protein
114	 56.85	0	107962..108450	+	162	55380188	-	rrnB0136	-	hypothetical protein
115	 56.62	0	108664..109131	-	155	55380189	-	rrnB0137	-	hypothetical protein
116	 58.25	0	109620..109916	+	98	55380190	-	rrnB0138	-	hypothetical protein
117	 57.18	0	110062..110430	+	122	55380191	-	rrnB0140	-	hypothetical protein
118	 54.90	0	111730..112086	+	118	55380192	-	rrnB0142	-	hypothetical protein
119	 56.16	0	112086..112304	+	72	55380193	tnp	rrnB0143	-	transposase
120	 58.48	0	112362..112874	+	170	55380194	-	rrnB0145	-	hypothetical protein
121	 56.01	0	113148..114095	+	315	55380195	tnp	rrnB0146	-	putative ISH8 transposase
122	 55.25	0	114675..114893	+	72	55380196	-	rrnB0147	-	hypothetical protein
123	 58.60	0	115275..115646	+	123	55380197	tfbC	rrnB0148	-	transcription initiation factor IIB
124	 53.20	-1	116194..116490	+	98	55380198	-	rrnB0151	-	hypothetical protein
125	 54.51	0	116480..116767	+	95	55380199	-	rrnB0152	-	hypothetical protein
126	 60.51	0	116746..117135	-	129	55380200	-	rrnB0154	-	hypothetical protein
127	 53.51	-1	117242..117682	+	146	55380201	-	rrnB0155	-	hypothetical protein
128	 47.56	-2	118051..120945	+	964	55380202	-	rrnB0156	-	putative light and redox sensing histidine kinase
129	 46.89	-2	121051..121323	+	90	55380203	-	rrnB0157	-	padR like DNA binding protein
130	 58.87	0	121381..121893	+	170	55380204	-	rrnB0158	-	hypothetical protein
131	 55.06	0	122268..122534	+	88	55380205	-	rrnB0160	-	hypothetical protein
132	 51.04	-1	122650..122937	+	95	55380206	-	rrnB0161	-	hypothetical protein
133	 59.15	0	123204..123509	-	101	55380207	-	rrnB0162	-	hypothetical protein
134	 54.07	0	123755..124405	-	216	55380208	-	rrnB0163	-	hypothetical protein
135	 56.95	0	124402..125616	-	404	55380209	-	rrnB0164	-	hypothetical protein
136	 56.36	0	126085..127200	-	371	55380210	-	rrnB0166	-	hypothetical protein
137	 56.84	0	127203..131891	-	1562	55380211	cbp	rrnB0167	-	calcium-binding protein-like
138	 57.70	0	131974..132876	+	300	55380212	-	rrnB0168	-	hypothetical protein
139	 60.00	0	133070..133219	+	49	55380213	-	rrnB0169	-	hypothetical protein
140	 56.21	0	133413..133565	+	50	55380214	-	rrnB0170	-	hypothetical protein
141	 52.57	-1	133828..134664	-	278	55380215	-	rrnB0171	-	putative acyltransferase
142	 57.79	0	134714..135220	-	168	55380216	-	rrnB0172	-	hypothetical protein
143	 51.13	-1	135649..136047	+	132	55380217	-	rrnB0173	-	hypothetical protein
144	 53.03	-1	136333..137403	-	356	55380218	imd2	rrnB0175	-	inosine monophosphate dehydrogenase
145	 54.11	0	137662..138306	-	214	55380219	-	rrnB0176	-	hypothetical protein
146	 54.92	0	138444..139328	-	294	55380220	-	rrnB0177	-	hypothetical protein
147	 59.56	0	140072..140662	-	196	55380221	-	rrnB0179	-	hypothetical protein
148	 63.52	+1	140768..140926	+	52	55380222	-	rrnB0178	-	hypothetical protein
149	 62.06	+1	141028..147948	-	2306	55380223	oye1	rrnB0180	-	light- and oxygen-sensing histidine kinase
150	 56.15	0	148264..148824	+	186	55380224	-	rrnB0181	-	hypothetical protein
151	 56.98	0	148869..149549	+	226	55380225	tnp	rrnB0183	-	transposase
152	 59.08	0	150203..150571	-	122	55380226	-	rrnB0184	-	hypothetical protein
153	 51.28	-1	150817..151011	+	64	55380227	-	rrnB0185	-	hypothetical protein
154	 59.02	0	151150..152025	+	291	55380228	-	rrnB0186	-	hypothetical protein
155	 61.31	0	152022..152450	+	142	55380229	-	rrnB0187	-	putative cupin
156	 63.72	+1	152450..153670	+	406	55380230	-	rrnB0188	-	hypothetical protein
157	 62.05	+1	153777..154166	-	129	55380231	-	rrnB0189	-	hypothetical protein
158	 61.17	0	154242..154550	-	102	55380232	-	rrnB0190	-	hypothetical protein
159	 52.92	-1	154830..155120	-	96	55380233	-	rrnB0191	-	hypothetical protein
160	 58.87	0	155461..156345	+	294	55380234	usp1	rrnB0192	-	universal stress protein 1
161	 53.73	-1	156429..157085	+	218	55380235	-	rrnB0193	-	hypothetical protein
162	 56.27	0	157169..157447	-	92	55380236	-	rrnB0195	-	hypothetical protein
163	 52.45	-1	158857..159060	-	67	55380237	-	rrnB0196	-	hypothetical protein
164	 55.02	0	159026..160459	-	477	55380238	lpdA3	rrnB0197	-	dihydrolipoamide dehydrogenase
165	 57.36	0	160459..162081	-	540	55380239	pdhC1	rrnB0198	-	branched-chain alpha-keto acid dehydrogenase subunit E2
166	 57.82	0	161990..163006	-	338	55380240	pdhB2	rrnB0199	-	pyruvate dehydrogenase
167	 58.22	0	163003..164151	-	382	55380241	pdhA2	rrnB0200	-	pyruvate dehydrogenase E1 component alpha subunit
57.96	MEAN

3.96	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.