IslandPathversion 1.0

IslandPath Analysis: Haloarcula marismortui ATCC 43049



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 62.75 STD DEV: 4.09
Haloarcula marismortui ATCC 43049 chromosome I, complete sequence - 1..3131724
3131 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
942	 65.61	0	948030..948407	-	125	55377884	-	rrnAC1065	-	hypothetical protein
943	 61.12	0	949009..951081	+	690	55377885	prk1	rrnAC1067	-	protein kinase
944	 64.08	0	951081..953363	+	760	55377886	prkA	rrnAC1068	-	kinase anchor protein
945	 63.32	0	953354..954667	+	437	55377887	-	rrnAC1069	-	hypothetical protein
946	 62.35	0	954664..956703	+	679	55377888	spoVR	rrnAC1070	-	stage V sporulation protein R-like
947	 62.53	0	956813..957199	+	128	55377889	-	rrnAC1071	-	hypothetical protein
948	 63.42	0	957294..958619	+	441	55377890	cyp2	rrnAC1072	-	cytochrome P450
949	 62.60	0	958678..959070	+	130	55377891	-	rrnAC1073	-	hypothetical protein
950	 61.72	0	959094..961076	-	660	55377892	fadD3	rrnAC1074	-	long-chain fatty-acid-CoA ligase
951	 57.35	-1	961560..962708	+	382	55377893	-	rrnAC1075	-	hypothetical protein
952	 57.04	-1	962678..963871	+	397	55377894	capB	rrnAC1076	-	Mur ligase family CapB protein
953	 59.08	0	963881..965119	+	412	55377895	-	rrnAC1077	-	hypothetical protein
954	 57.42	-1	965204..966133	-	309	55377896	-	rrnAC1078	-	hypothetical protein
955	 50.48	-2	966250..966459	+	69	55377897	-	rrnAC1079	-	hypothetical protein
956	 55.56	-1	966565..966744	-	59	55377898	-	rrnAC1080	-	hypothetical protein
957	 65.99	0	966884..968065	-	393	55377899	rffH1	rrnAC1081	-	glucose-1-phosphate thymidylyltransferase
958	 55.83	-1	968170..969405	-	411	55377900	-	rrnAC1082	-	hypothetical protein
959	 63.73	0	970365..972374	-	669	55377901	hbd1	rrnAC1083	-	3-hydroxyacyl-CoA dehydrogenase
960	 61.92	0	972443..973600	+	385	55377902	acdG	rrnAC1084	-	acyl-CoA dehydrogenase
961	 59.69	0	973612..974127	-	171	55377903	tnp	rrnAC1085	-	transposase
962	 61.15	0	974036..974887	-	283	55377904	-	rrnAC1086	-	hypothetical protein
963	 65.77	0	975298..975855	+	185	55377905	cysE2	rrnAC1087	-	serine acetyltransferase
964	 65.36	0	975901..976512	+	203	55377906	alkA	rrnAC1088	-	DNA-3-methyladenine glycosylase
965	 64.15	0	976543..977895	-	450	55377907	-	rrnAC1089	-	hypothetical protein
966	 63.05	0	978010..979032	+	340	55377908	-	rrnAC1090	-	hypothetical protein
967	 62.86	0	979132..979551	+	139	55377909	sdhC	rrnAC1091	-	succinate dehydrogenase subunit C
968	 60.38	0	979551..979916	+	121	55377910	-	rrnAC1092	-	hypothetical protein
969	 61.15	0	979920..980807	+	295	55377911	sdhB	rrnAC1093	-	succinate dehydrogenase iron-sulfur protein subunit
970	 59.93	0	980962..982311	-	449	55377912	kinA4	rrnAC1096	-	signal-transducing histidine kinase-like
971	 64.92	0	982560..984386	+	608	55377913	sdhA1	rrnAC1097	-	succinate dehydrogenase flavoprotein subunit
972	 64.44	0	984426..984695	-	89	55377914	-	rrnAC1099	-	hypothetical protein
973	 55.95	-1	985436..985687	-	83	55377915	-	rrnAC1100	-	hypothetical protein
974	 68.49	+1	985747..986787	+	346	55377916	-	rrnAC1101	-	hypothetical protein
975	 65.76	0	986790..988109	+	439	55377917	cbiA2	rrnAC1102	-	cobyrinic acid ac-diamide synthase
976	 62.10	0	988182..988991	+	269	55377918	-	rrnAC1103	-	hypothetical protein
977	 60.00	0	988994..989788	+	264	55377919	-	rrnAC1105	-	hypothetical protein
978	 65.48	0	989795..990214	-	139	55377920	-	rrnAC1106	-	hypothetical protein
979	 65.14	0	990364..991539	-	391	55377921	trkH1	rrnAC1107	-	Trk family potassium uptake protein
980	 67.48	+1	991919..993271	-	450	55377922	purD2	rrnAC1109	-	phosphoribosylamine-glycine ligase
981	 60.98	0	993424..993687	+	87	55377923	-	rrnAC1110	-	hypothetical protein
982	 66.17	0	993742..995943	+	733	55377924	-	rrnAC1111	-	thioredoxin domain-containing protein
983	 61.79	0	995946..996335	-	129	55377925	-	rrnAC1112	-	hypothetical protein
984	 66.44	0	996445..998604	-	719	55377926	bglX-2	rrnAC1113	-	beta-D-glucosidase
985	 63.08	0	998676..1000403	-	575	55377927	htlD	rrnAC1114	-	HTR-like protein
986	 60.19	0	1000431..1000754	+	107	55377928	-	rrnAC1115	-	hypothetical protein
987	 65.09	0	1000751..1001575	+	274	55377929	-	rrnAC1116	-	hypothetical protein
988	 62.15	0	1001599..1002174	-	191	55377930	-	rrnAC1117	-	hypothetical protein
989	 56.58	-1	1002297..1002881	+	194	55377931	hlx1	rrnAC1118	-	HoxA-like transcriptional regulator
990	 62.43	0	1002868..1003551	+	227	55377932	-	rrnAC1119	-	hypothetical protein
991	 61.16	0	1003634..1004377	+	247	55377933	thyX	rrnAC1121	-	thymidylate synthase ThyX
992	 55.83	-1	1004630..1004749	+	39	55377934	-	rrnAC1123	-	hypothetical protein
993	 62.22	0	1004802..1005206	+	134	55377935	eif2B2	rrnAC1124	-	translation initiation factor IF-2 subunit beta
994	 56.67	-1	1005207..1005386	-	59	55377936	-	rrnAC1125	-	hypothetical protein
995	 62.44	0	1005460..1006428	-	322	55377937	tfbH	rrnAC1126	-	transcription initiation factor IIB
996	 58.33	-1	1006943..1007074	-	43	55377938	-	rrnAC1127	-	hypothetical protein
997	 59.65	0	1007087..1007371	-	94	55377939	-	rrnAC1128	-	hypothetical protein
998	 64.95	0	1007473..1008522	+	349	55377940	trxB3	rrnAC1129	-	thioredoxin reductase
999	 62.50	0	1008585..1008872	+	95	55377941	-	rrnAC1130	-	hypothetical protein
1000	 66.36	0	1008889..1009548	-	219	55377942	ribG	rrnAC1131	-	hypothetical protein
1001	 59.26	0	1009593..1010051	-	152	55377943	-	rrnAC1132	-	hypothetical protein
1002	 66.35	0	1010295..1011575	+	426	55377944	rpaA	rrnAC1133	-	replication factor A
1003	 69.28	+1	1011572..1013293	+	573	55377945	-	rrnAC1135	-	hypothetical protein
1004	 67.07	+1	1013342..1014091	+	249	55377946	yhcR1	rrnAC1137	-	phosphoesterase
1005	 64.89	0	1014111..1014617	-	168	55377947	fbp1	rrnAC1138	-	fructose-1,6-bisphosphatase
1006	 65.19	0	1015136..1017970	+	944	55377948	yprA4	rrnAC1139	-	ATP-dependent helicase
1007	 59.68	0	1017994..1018737	-	247	55377949	-	rrnAC1140	-	hypothetical protein
1008	 55.85	-1	1018894..1020030	-	378	55377950	oye	rrnAC1142	-	hypothetical protein
1009	 67.98	+1	1020231..1020839	+	202	55377951	-	rrnAC1143	-	hypothetical protein
1010	 67.92	+1	1020875..1022632	+	585	55377952	mutS3	rrnAC1144	-	DNA mismatch repair protein
1011	 63.87	0	1022638..1023102	-	154	55377953	blp	rrnAC1145	-	bacterio-opsin linked product
1012	 67.31	+1	1023382..1023693	-	103	55377954	-	rrnAC1146	-	hypothetical protein
1013	 64.33	0	1024049..1024219	-	56	55377955	-	rrnAC1147	-	hypothetical protein
1014	 69.02	+1	1024348..1026729	-	793	55377956	ctpB	rrnAC1149	-	cation transporting ATPase
1015	 68.22	+1	1026726..1027499	-	257	55377957	-	rrnAC1150	-	hypothetical protein
1016	 59.32	0	1027501..1027677	-	58	55377958	-	rrnAC1151	-	hypothetical protein
1017	 64.96	0	1027844..1029073	+	409	55377959	hcp5	rrnAC1152	-	halocyanin precursor-like
1018	 58.12	-1	1029078..1029650	+	190	55377960	coxB2	rrnAC1153	-	cytochrome c oxidase subunit II
1019	 62.34	0	1029650..1031338	+	562	55377961	coxA3	rrnAC1154	-	cytochrome c oxidase polypeptide I
1020	 62.30	0	1031362..1031910	+	182	55377962	-	rrnAC1155	-	hypothetical protein
1021	 63.44	0	1031916..1033187	-	423	55377963	-	rrnAC1156	-	hypothetical protein
1022	 62.26	0	1033228..1034361	-	377	55377964	-	rrnAC1157	-	DNA-binding protein
1023	 62.12	0	1034422..1035630	-	402	55377965	-	rrnAC1158	-	protein phosphatase 2C like phosphatase
1024	 60.29	0	1035627..1036865	-	412	55377966	pknA1	rrnAC1159	-	serine/threonine-protein kinase PknA
1025	 63.12	0	1036922..1038106	-	394	55377967	-	rrnAC1160	-	von Willebrand factor type A like metal binding protein
1026	 64.23	0	1038228..1038842	-	204	55377968	-	rrnAC1161	-	hypothetical protein
1027	 62.54	0	1038832..1039947	-	371	55377969	-	rrnAC1162	-	hypothetical protein
1028	 63.22	0	1040044..1040682	-	212	55377970	estA	rrnAC1163	-	phospholipase/carboxylesterase
1029	 54.43	-2	1041238..1041474	+	78	55377971	-	rrnAC1164	-	hypothetical protein
1030	 57.81	-1	1041611..1042084	-	157	55377972	-	rrnAC1165	-	hypothetical protein
1031	 61.94	0	1042335..1043243	+	302	55377973	ogg	rrnAC1166	-	8-oxoguanine DNA glycosylase
1032	 63.04	0	1043297..1043572	+	91	55377974	acyP	rrnAC1167	-	acylphosphatase
1033	 68.54	+1	1043619..1045061	+	480	55377975	-	rrnAC1168	-	hypothetical protein
1034	 63.44	0	1045069..1045935	-	288	55377976	hflX	rrnAC1169	-	GTP-binding protein HflX
1035	 62.23	0	1046564..1048837	-	757	55377977	katG2	rrnAC1171	-	peroxidase/catalase HPI
1036	 62.93	0	1048964..1049311	+	115	55377978	-	rrnAC1172	-	hypothetical protein
1037	 61.04	0	1049327..1050055	-	242	55377979	-	rrnAC1173	-	putative RNA-associated protein
1038	 65.77	0	1050143..1050925	-	260	55377980	psmA4	rrnAC1174	-	proteasome subunit alpha
1039	 64.20	0	1050928..1051413	-	161	55377981	rpp14	rrnAC1175	-	RNaseP subunit 14
1040	 60.99	0	1051524..1051946	-	140	55377982	-	rrnAC1176	-	hypothetical protein
1041	 66.53	0	1052092..1052799	-	235	55377983	rnp30	rrnAC1177	-	ribonuclease P subunit p30
62.75	MEAN

4.09	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.