IslandPath Analysis: Haloarcula marismortui ATCC 43049



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 62.75   STD DEV: 4.09
Haloarcula marismortui ATCC 43049 chromosome I, complete sequence - 1..3131724
3131 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
48	 67.20	+1	44978..45724	+	248	55376990	dpd	rrnAC0052	-	dihydropyrimidine dehydrogenase
49	 67.50	+1	45844..46560	+	238	55376991	citG	rrnAC0053	-	CitG family protein
50	 66.83	0	46557..47183	+	208	55376992	-	rrnAC0054	-	hypothetical protein
51	 56.77	-1	47375..47566	+	63	55376993	rps17E	rrnAC0055	-	30S ribosomal protein S17e
52	 64.31	0	47629..48690	-	353	55376994	mrp1	rrnAC0056	-	Mrp protein-like
53	 63.00	0	48889..49188	-	99	55376995	-	rrnAC0057	-	hypothetical protein
54	 62.36	0	49512..50045	+	177	55376996	rps13p	rrnAC0058	-	30S ribosomal protein S13P
55	 63.76	0	50045..50560	+	171	55376997	rps4p	rrnAC0059	-	30S ribosomal protein S4
56	 65.13	0	50557..50946	+	129	55376998	rps11p	rrnAC0061	-	30S ribosomal protein S11P
57	 64.62	0	50950..51729	+	259	55376999	rpoD	rrnAC0062	-	DNA-directed RNA polymerase subunit D
58	 60.68	0	51943..52293	+	116	55377000	rpl18E	rrnAC0064	-	50S ribosomal protein L18e
59	 60.27	0	52290..52727	+	145	55377001	rpl13p	rrnAC0065	-	50S ribosomal protein L13P
60	 65.66	0	52721..53119	+	132	55377002	rps9p	rrnAC0066	-	30S ribosomal protein S9P
61	 61.19	0	53132..53332	+	66	55377003	rpoN	rrnAC0067	-	DNA-directed RNA polymerase subunit N
62	 60.92	0	53329..53502	+	57	55377004	rpoK	rrnAC0068	-	DNA-directed RNA polymerase subunit K
63	 65.34	0	53505..54710	+	401	55377005	eno	rrnAC0069	-	phosphopyruvate hydratase
64	 65.42	0	54707..55510	+	267	55377006	rps2P	rrnAC0070	-	30S ribosomal protein S2
65	 62.76	0	55610..55993	+	127	55377007	-	rrnAC0071	-	hypothetical protein
66	 65.88	0	56052..56432	+	126	55377008	-	rrnAC0072	-	hypothetical protein
67	 63.75	0	56503..57840	+	445	55377009	cyc	rrnAC0073	-	cytochrome P450
68	 57.47	-1	58045..58218	+	57	55377010	-	rrnAC0074	-	hypothetical protein
69	 61.03	0	58215..60395	+	726	55377011	htlD	rrnAC0075	-	HTR-like protein
70	 66.97	+1	60463..61446	+	327	55377012	mvk	rrnAC0077	-	mevalonate kinase
71	 68.79	+1	61443..62195	+	250	55377013	argB1	rrnAC0078	-	acetylglutamate kinase
72	 65.53	0	62369..63859	+	496	55377014	-	rrnAC0079	-	hypothetical protein
73	 61.24	0	64088..65470	+	460	55377015	-	rrnAC0080	-	hydrolase
74	 64.84	0	65475..66515	+	346	55377016	idsA	rrnAC0081	-	geranylgeranyl diphosphate synthase
75	 66.03	0	66518..67783	+	421	55377017	-	rrnAC0082	-	hypothetical protein
76	 64.22	0	68130..68783	+	217	55377018	arsA1	rrnAC0083	-	arsenical pump-driving ATPase
77	 65.75	0	68964..70703	+	579	55377019	gltX	rrnAC0085	-	glutamyl-tRNA synthetase
78	 63.84	0	70712..73150	-	812	55377020	htlD	rrnAC0086	-	HTR-like protein
79	 62.37	0	73404..73775	+	123	55377021	hsp5	rrnAC0087	-	heat shock protease protein
80	 67.78	+1	73920..74903	+	327	55377022	lipC	rrnAC0088	-	lipase/esterase
81	 61.82	0	74953..75282	+	109	55377023	ferB	rrnAC0089	-	ferredoxin
82	 61.75	0	75487..76341	+	284	55377024	etfB2	rrnAC0090	-	electron transfer flavoprotein beta subunit
83	 62.28	0	76344..78008	+	554	55377025	etfA1	rrnAC0091	-	electron transfer flavoprotein alpha subunit
84	 67.39	+1	78001..79662	+	553	55377026	ydiS	rrnAC0094	-	flavoprotein
85	 66.94	+1	79674..80033	+	119	55377027	-	rrnAC0095	-	hypothetical protein
86	 62.30	0	80102..80833	+	243	55377028	hat-1	rrnAC0096	-	acetyl transferase
87	 64.21	0	80830..81804	-	324	55377029	mer3	rrnAC0097	-	N5N10-methylenetetrahydromethanopterin reductase
88	 62.73	0	81880..83481	-	533	55377030	alkK1	rrnAC0098	-	medium-chain acyl-CoA ligase
89	 67.88	+1	83605..83769	-	54	55377031	-	rrnAC0099	-	hypothetical protein
90	 67.47	+1	83766..84263	-	165	55377032	-	rrnAC0100	-	hypothetical protein
91	 68.64	+1	84260..86587	-	775	55377034	-	rrnAC0101	-	hypothetical protein
92	 69.53	+1	86586..87599	+	337	55377033	npd	rrnAC0102	-	2-nitropropane dioxygenase-related protein
93	 63.36	0	87813..88175	+	120	55377035	rpl7ae	rrnAC0103	-	50S ribosomal protein L7Ae
94	 65.81	0	88417..88767	+	116	55377036	rpl24E	rrnAC0104	-	50S ribosomal protein L24e
95	 63.23	0	88767..89231	+	154	55377037	ndk	rrnAC0106	-	nucleoside diphosphate kinase
96	 62.79	0	89297..89554	+	85	55377038	-	rrnAC0107	-	glutaredoxin-like
97	 62.41	0	89527..89667	-	46	55377039	-	rrnAC0108	-	hypothetical protein
98	 59.01	0	90289..90693	-	134	55377040	msrB	rrnAC0109	-	peptide methionine sulfoxide reductase msrB
99	 60.19	0	90823..92505	-	560	55377041	betA	rrnAC0110	-	GMC family oxidoreductase
100	 59.81	0	92502..93128	-	208	55377042	-	rrnAC0111	-	hypothetical protein
101	 58.62	-1	93088..94032	-	314	55377043	-	rrnAC0112	-	hypothetical protein
102	 59.28	0	94378..94824	-	148	55377044	pai1	rrnAC0113	-	sporulation regulator-like
103	 60.51	0	94928..95512	-	194	55377045	guaB5	rrnAC0114	-	inosine-5'-monophosphate dehydrogenase related protein V
104	 58.64	-1	95571..96479	-	302	55377046	-	rrnAC0115	-	GTP cyclohydrolase III
105	 61.06	0	96454..96792	-	112	55377047	-	rrnAC0116	-	hypothetical protein
106	 61.00	0	96848..97147	-	99	55377048	-	rrnAC0117	-	hypothetical protein
107	 60.59	0	97193..98575	-	460	55377049	-	rrnAC0119	-	hypothetical protein
108	 62.95	0	99064..99816	-	250	55377050	-	rrnAC0120	-	hypothetical protein
109	 64.27	0	99917..100459	+	180	55377051	-	rrnAC0121	-	hypothetical protein
110	 62.04	0	100460..101086	-	208	55377052	udg2	rrnAC0123	-	uracil DNA glycosylase superfamily protein
111	 65.08	0	101088..102287	-	399	55377053	aroC	rrnAC0124	-	chorismate synthase
112	 62.55	0	102336..102578	-	80	55377054	-	rrnAC0126	-	hypothetical protein
113	 67.29	+1	102834..104123	-	429	55377055	aroA	rrnAC0127	-	3-phosphoshikimate 1-carboxyvinyltransferase
114	 66.67	0	104218..104922	+	234	55377056	sdr	rrnAC0128	-	short chain dehydrogenase
115	 65.63	0	104968..105834	+	288	55377057	zip	rrnAC0129	-	zinc transporter
116	 60.09	0	105849..107246	-	465	55377058	htl	rrnAC0130	-	signal-transducing histidine kinase-like
117	 61.77	0	107253..108743	-	496	55377059	-	rrnAC0131	-	RecA/helicase-like
118	 63.33	0	109004..110293	-	429	55377060	-	rrnAC0132	-	lysine-ketoglutarate reductase/saccharopine dehydrogenase
119	 65.63	0	110356..110742	-	128	55377061	-	rrnAC0133	-	hypothetical protein
120	 63.70	0	110908..112557	+	549	55377062	ilvB1	rrnAC0134	-	acetolactate synthase large subunit
121	 62.11	0	112592..113293	+	233	55377063	-	rrnAC0135	-	hypothetical protein
122	 57.94	-1	113302..113427	-	41	55377064	-	rrnAC0136	-	hypothetical protein
123	 65.66	0	113484..114476	+	330	55377065	cysK2	rrnAC0137	-	cysteine synthase
124	 64.22	0	114511..115122	-	203	55377066	eif2B1	rrnAC0138	-	translation initiation factor IF-2 subunit beta
125	 61.68	0	115220..115600	+	126	55377067	-	rrnAC0139	-	hypothetical protein
126	 64.31	0	115611..116330	+	239	55377068	-	rrnAC0140	-	hypothetical protein
127	 66.06	0	116463..118286	-	607	55377069	sdhA2	rrnAC0141	-	succinate dehydrogenase flavoprotein subunit
128	 63.89	0	118418..119893	-	491	55377070	nhaC2	rrnAC0143	-	Na+/H+ antiporter
129	 67.62	+1	120096..120938	-	280	55377071	potA3	rrnAC0145	-	spermidine/putrescine ABC transporter ATP-binding protein
130	 66.78	0	121246..123054	-	602	55377072	cysT2	rrnAC0146	-	sulfate transport system permease protein
131	 64.44	0	123115..124239	-	374	55377073	tppA	rrnAC0147	-	thiamine-binding periplasmic protein precursor-like
132	 63.31	0	124304..124720	-	138	55377074	-	rrnAC0148	-	hypothetical protein
133	 63.79	0	124819..125931	+	370	55377075	pdhA1	rrnAC0149	-	pyruvate dehydrogenase E1 component alpha subunit
134	 63.81	0	126250..126774	-	174	55377076	-	rrnAC0150	-	hypothetical protein
135	 67.32	+1	126829..128196	+	455	55377077	-	rrnAC0151	-	hypothetical protein
136	 63.05	0	128785..129033	-	82	55377078	-	rrnAC0153	-	hypothetical protein
137	 58.97	0	129044..129199	-	51	55377079	-	rrnAC0154	-	hypothetical protein
138	 63.17	0	129273..131189	-	638	55377080	epf2b	rrnAC0155	-	mRNA 3'-end processing factor-like
139	 62.11	0	131455..131937	+	160	55377081	-	rrnAC0157	-	hypothetical protein
140	 64.54	0	132661..133740	-	359	55377082	-	rrnAC0158	-	hypothetical protein
141	 63.27	0	133799..134386	-	195	55377083	-	rrnAC0159	-	hypothetical protein
142	 66.96	+1	134479..135162	-	227	55377084	-	rrnAC0160	-	hypothetical protein
143	 62.70	0	135237..135740	-	167	55377085	-	rrnAC0161	-	putative transcriptional regulator
144	 62.33	0	136046..136876	+	276	55377086	-	rrnAC0163	-	hypothetical protein
145	 63.87	0	136971..137756	+	261	55377087	-	rrnAC0165	-	hypothetical protein
146	 63.78	0	137879..139333	+	484	55377088	proS	rrnAC0166	-	prolyl-tRNA synthetase
147	 64.05	0	139491..140447	-	318	55377089	-	rrnAC0167	-	putative patatin-like phospholipase
62.75	MEAN

4.09	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.