IslandPathversion 1.0

IslandPath Analysis: Haloarcula marismortui ATCC 43049



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 62.75 STD DEV: 4.09
Haloarcula marismortui ATCC 43049 chromosome I, complete sequence - 1..3131724
3131 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
901	 61.69	0	901756..903201	+	481	55377843	-	rrnAC1022	-	hypothetical protein
902	 61.08	0	903198..903698	+	166	55377844	-	rrnAC1023	-	hypothetical protein
903	 60.17	0	903695..904648	+	317	55377845	-	rrnAC1024	-	hypothetical protein
904	 57.86	-1	904663..905673	-	336	55377846	moxR6	rrnAC1025	-	methanol dehydrogenase regulatory protein
905	 62.37	0	905666..906760	-	364	55377847	-	rrnAC1026	-	hypothetical protein
906	 59.78	0	906760..907035	-	91	55377848	-	rrnAC1027	-	hypothetical protein
907	 65.59	0	907132..910197	-	1021	55377849	lolC	rrnAC1028	-	putative permease
908	 63.27	0	910205..910969	-	254	55377850	-	rrnAC1029	-	ABC transporter ATP-binding protein
909	 65.30	0	910997..912685	-	562	55377851	nps	rrnAC1030	-	putative sodium/phosphate symporter
910	 62.47	0	912963..914987	-	674	55377852	-	rrnAC1031	-	hypothetical protein
911	 62.23	0	915197..916210	+	337	55377853	-	rrnAC1032	-	hypothetical protein
912	 62.38	0	916324..916860	+	178	55377854	-	rrnAC1033	-	hypothetical protein
913	 59.57	0	916985..917125	-	46	55377855	-	rrnAC1034	-	hypothetical protein
914	 56.12	-1	917323..919020	-	565	55377856	-	rrnAC1035	-	hypothetical protein
915	 57.56	-1	919348..920664	-	438	55377857	-	rrnAC1036	-	hypothetical protein
916	 63.56	0	921685..922167	+	160	55377858	-	rrnAC1037	-	hypothetical protein
917	 62.86	0	922213..923001	+	262	55377859	-	rrnAC1038	-	hypothetical protein
918	 52.70	-2	923143..924051	-	302	55377860	yafB-2	rrnAC1039	-	aldo/keto reductase family oxidoreductase
919	 50.61	-2	924389..925372	-	327	55377861	-	rrnAC1041	-	hypothetical protein
920	 52.40	-2	925813..927663	-	616	55377862	msbA-2	rrnAC1042	-	ABC transporter ATP-binding protein
921	 51.66	-2	928106..929038	+	310	55377863	lgtD	rrnAC1043	-	glycosyl transferase
922	 65.82	0	929261..930565	+	434	55377864	-	rrnAC1044	-	putative acetamidase/formamidase
923	 63.32	0	931083..931649	+	188	55377865	-	rrnAC1045	-	hypothetical protein
924	 60.94	0	931689..932456	-	255	55377866	-	rrnAC1046	-	hypothetical protein
925	 59.50	0	932760..933275	-	171	55377867	-	rrnAC1047	-	putative membrane-bound metal-dependent hydrolase
926	 51.07	-2	933693..934160	-	155	55377868	-	rrnAC1048	-	hypothetical protein
927	 51.21	-2	934153..934482	-	109	55377869	-	rrnAC1049	-	transcription regulator
928	 60.64	0	934601..935131	-	176	55377870	-	rrnAC1050	-	hypothetical protein
929	 58.42	-1	935131..935421	-	96	55377871	-	rrnAC1051	-	hypothetical protein
930	 56.94	-1	935747..936322	-	191	55377872	-	rrnAC1052	-	hypothetical protein
931	 49.18	-2	937406..938680	+	424	55377873	cdc6i	rrnAC1053	-	cell division control protein 6 homolog 6
932	 57.44	-1	939055..939444	+	129	55377874	tnp	rrnAC1054	-	putative transposase
933	 52.60	-2	939686..939877	+	63	55377875	-	rrnAC1055	-	hypothetical protein
934	 50.00	-2	940238..940465	+	75	55377876	-	rrnAC1056	-	hypothetical protein
935	 53.68	-2	940462..940869	+	135	55377877	stbB	rrnAC1057	-	plasmid stability protein StbB
936	 55.36	-1	940955..941476	-	173	55377878	-	rrnAC1059	-	hypothetical protein
937	 55.76	-1	941632..941952	-	106	55377879	-	rrnAC1060	-	hypothetical protein
938	 58.31	-1	942026..943951	-	641	55377880	trwB1	rrnAC1061	-	transfer complex protein
939	 59.47	0	943948..944961	-	337	55377881	-	rrnAC1062	-	hypothetical protein
940	 59.65	0	944964..946259	-	431	55377882	-	rrnAC1063	-	hypothetical protein
941	 62.67	0	947548..947997	-	149	55377883	-	rrnAC1064	-	hypothetical protein
942	 65.61	0	948030..948407	-	125	55377884	-	rrnAC1065	-	hypothetical protein
943	 61.12	0	949009..951081	+	690	55377885	prk1	rrnAC1067	-	protein kinase
944	 64.08	0	951081..953363	+	760	55377886	prkA	rrnAC1068	-	kinase anchor protein
945	 63.32	0	953354..954667	+	437	55377887	-	rrnAC1069	-	hypothetical protein
946	 62.35	0	954664..956703	+	679	55377888	spoVR	rrnAC1070	-	stage V sporulation protein R-like
947	 62.53	0	956813..957199	+	128	55377889	-	rrnAC1071	-	hypothetical protein
948	 63.42	0	957294..958619	+	441	55377890	cyp2	rrnAC1072	-	cytochrome P450
949	 62.60	0	958678..959070	+	130	55377891	-	rrnAC1073	-	hypothetical protein
950	 61.72	0	959094..961076	-	660	55377892	fadD3	rrnAC1074	-	long-chain fatty-acid-CoA ligase
951	 57.35	-1	961560..962708	+	382	55377893	-	rrnAC1075	-	hypothetical protein
952	 57.04	-1	962678..963871	+	397	55377894	capB	rrnAC1076	-	Mur ligase family CapB protein
953	 59.08	0	963881..965119	+	412	55377895	-	rrnAC1077	-	hypothetical protein
954	 57.42	-1	965204..966133	-	309	55377896	-	rrnAC1078	-	hypothetical protein
955	 50.48	-2	966250..966459	+	69	55377897	-	rrnAC1079	-	hypothetical protein
956	 55.56	-1	966565..966744	-	59	55377898	-	rrnAC1080	-	hypothetical protein
957	 65.99	0	966884..968065	-	393	55377899	rffH1	rrnAC1081	-	glucose-1-phosphate thymidylyltransferase
958	 55.83	-1	968170..969405	-	411	55377900	-	rrnAC1082	-	hypothetical protein
959	 63.73	0	970365..972374	-	669	55377901	hbd1	rrnAC1083	-	3-hydroxyacyl-CoA dehydrogenase
960	 61.92	0	972443..973600	+	385	55377902	acdG	rrnAC1084	-	acyl-CoA dehydrogenase
961	 59.69	0	973612..974127	-	171	55377903	tnp	rrnAC1085	-	transposase
962	 61.15	0	974036..974887	-	283	55377904	-	rrnAC1086	-	hypothetical protein
963	 65.77	0	975298..975855	+	185	55377905	cysE2	rrnAC1087	-	serine acetyltransferase
964	 65.36	0	975901..976512	+	203	55377906	alkA	rrnAC1088	-	DNA-3-methyladenine glycosylase
965	 64.15	0	976543..977895	-	450	55377907	-	rrnAC1089	-	hypothetical protein
966	 63.05	0	978010..979032	+	340	55377908	-	rrnAC1090	-	hypothetical protein
967	 62.86	0	979132..979551	+	139	55377909	sdhC	rrnAC1091	-	succinate dehydrogenase subunit C
968	 60.38	0	979551..979916	+	121	55377910	-	rrnAC1092	-	hypothetical protein
969	 61.15	0	979920..980807	+	295	55377911	sdhB	rrnAC1093	-	succinate dehydrogenase iron-sulfur protein subunit
970	 59.93	0	980962..982311	-	449	55377912	kinA4	rrnAC1096	-	signal-transducing histidine kinase-like
971	 64.92	0	982560..984386	+	608	55377913	sdhA1	rrnAC1097	-	succinate dehydrogenase flavoprotein subunit
972	 64.44	0	984426..984695	-	89	55377914	-	rrnAC1099	-	hypothetical protein
973	 55.95	-1	985436..985687	-	83	55377915	-	rrnAC1100	-	hypothetical protein
974	 68.49	+1	985747..986787	+	346	55377916	-	rrnAC1101	-	hypothetical protein
975	 65.76	0	986790..988109	+	439	55377917	cbiA2	rrnAC1102	-	cobyrinic acid ac-diamide synthase
976	 62.10	0	988182..988991	+	269	55377918	-	rrnAC1103	-	hypothetical protein
977	 60.00	0	988994..989788	+	264	55377919	-	rrnAC1105	-	hypothetical protein
978	 65.48	0	989795..990214	-	139	55377920	-	rrnAC1106	-	hypothetical protein
979	 65.14	0	990364..991539	-	391	55377921	trkH1	rrnAC1107	-	Trk family potassium uptake protein
980	 67.48	+1	991919..993271	-	450	55377922	purD2	rrnAC1109	-	phosphoribosylamine-glycine ligase
981	 60.98	0	993424..993687	+	87	55377923	-	rrnAC1110	-	hypothetical protein
982	 66.17	0	993742..995943	+	733	55377924	-	rrnAC1111	-	thioredoxin domain-containing protein
983	 61.79	0	995946..996335	-	129	55377925	-	rrnAC1112	-	hypothetical protein
984	 66.44	0	996445..998604	-	719	55377926	bglX-2	rrnAC1113	-	beta-D-glucosidase
985	 63.08	0	998676..1000403	-	575	55377927	htlD	rrnAC1114	-	HTR-like protein
986	 60.19	0	1000431..1000754	+	107	55377928	-	rrnAC1115	-	hypothetical protein
987	 65.09	0	1000751..1001575	+	274	55377929	-	rrnAC1116	-	hypothetical protein
988	 62.15	0	1001599..1002174	-	191	55377930	-	rrnAC1117	-	hypothetical protein
989	 56.58	-1	1002297..1002881	+	194	55377931	hlx1	rrnAC1118	-	HoxA-like transcriptional regulator
990	 62.43	0	1002868..1003551	+	227	55377932	-	rrnAC1119	-	hypothetical protein
991	 61.16	0	1003634..1004377	+	247	55377933	thyX	rrnAC1121	-	thymidylate synthase ThyX
992	 55.83	-1	1004630..1004749	+	39	55377934	-	rrnAC1123	-	hypothetical protein
993	 62.22	0	1004802..1005206	+	134	55377935	eif2B2	rrnAC1124	-	translation initiation factor IF-2 subunit beta
994	 56.67	-1	1005207..1005386	-	59	55377936	-	rrnAC1125	-	hypothetical protein
995	 62.44	0	1005460..1006428	-	322	55377937	tfbH	rrnAC1126	-	transcription initiation factor IIB
996	 58.33	-1	1006943..1007074	-	43	55377938	-	rrnAC1127	-	hypothetical protein
997	 59.65	0	1007087..1007371	-	94	55377939	-	rrnAC1128	-	hypothetical protein
998	 64.95	0	1007473..1008522	+	349	55377940	trxB3	rrnAC1129	-	thioredoxin reductase
999	 62.50	0	1008585..1008872	+	95	55377941	-	rrnAC1130	-	hypothetical protein
1000	 66.36	0	1008889..1009548	-	219	55377942	ribG	rrnAC1131	-	hypothetical protein
62.75	MEAN

4.09	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.