IslandPath Analysis: Haloarcula marismortui ATCC 43049



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 62.75   STD DEV: 4.09
Haloarcula marismortui ATCC 43049 chromosome I, complete sequence - 1..3131724
3131 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
865	 56.14	-1	860540..860710	-	56	55377807	-	rrnAC0983	-	hypothetical protein
866	 61.97	0	860839..861285	-	148	55377808	mamA2	rrnAC0984	-	methylaspartate mutase subunit S
867	 63.33	0	861534..862073	+	179	55377809	-	rrnAC0985	-	hypothetical protein
868	 60.81	0	862147..863154	-	335	55377810	nce2	rrnAC0986	-	Na+/Ca2+-exchanging protein
869	 65.71	0	863202..864137	-	311	55377811	mutY	rrnAC0987	-	A/G-specific adenine glycosylase
870	 62.20	0	864262..866253	-	663	55377812	htlD	rrnAC0988	-	HTR-like protein
871	 61.16	0	866267..866593	+	108	55377813	-	rrnAC0989	-	hypothetical protein
872	 62.93	0	866590..867873	-	427	55377814	mgtC1	rrnAC0990	-	magnesium transporter accessory protein
873	 59.64	0	868447..870381	+	644	55377815	htlD	rrnAC0991	-	HTR-like protein
874	 59.06	0	870541..870816	-	91	55377816	-	rrnAC0992	-	DNA binding domain-containing protein
875	 67.50	+1	871745..872464	+	239	55377817	-	rrnAC0994	-	hypothetical protein
876	 67.91	+1	872468..872950	-	160	55377818	mutT6	rrnAC0995	-	Mut/nudix family protein
877	 63.87	0	872951..873844	-	297	55377819	folD1	rrnAC0996	-	methylenetetrahydrofolate dehydrogenase
878	 66.50	0	873920..874510	-	196	55377820	-	rrnAC0998	-	hypothetical protein
879	 64.42	0	874586..875833	-	415	55377821	glyA	rrnAC0999	-	serine hydroxymethyltransferase
880	 64.13	0	875987..878074	+	695	55377822	-	rrnAC1000	-	hypothetical protein
881	 62.64	0	878453..879271	+	272	55377823	-	rrnAC1001	-	hypothetical protein
882	 66.55	0	879303..881012	+	569	55377824	-	rrnAC1002	-	hypothetical protein
883	 61.44	0	881028..882176	-	382	55377825	-	rrnAC1003	-	hypothetical protein
884	 66.31	0	882280..883119	-	279	55377826	suhB1	rrnAC1004	-	inositol-1-monophosphatase
885	 54.17	-2	883191..883406	-	71	55377827	-	rrnAC1006	-	hypothetical protein
886	 53.92	-2	884016..884117	+	33	55377828	-	rrnAC1007	-	hypothetical protein
887	 52.38	-2	884204..884308	+	34	55377829	-	rrnAC1008	-	hypothetical protein
888	 59.62	0	884544..884756	-	70	55377830	-	rrnAC1009	-	hypothetical protein
889	 53.58	-2	885451..886512	+	353	55377831	rfbB1	rrnAC1010	-	dTDP-glucose 4-6-dehydratase
890	 58.08	-1	886485..887486	+	333	55377832	rffG	rrnAC1011	-	dTDP-glucose dehydratase
891	 56.74	-1	887770..887910	+	46	55377833	-	rrnAC1012	-	hypothetical protein
892	 35.39	-2	888331..889740	-	469	55377834	-	rrnAC1013	-	hypothetical protein
893	 37.52	-2	892287..893816	-	509	55377835	-	rrnAC1014	-	hypothetical protein
894	 47.80	-2	895032..896192	-	386	55377836	gtr-7	rrnAC1015	-	glycosyltransferase
895	 50.00	-2	896327..896422	-	31	55377837	-	rrnAC1016	-	hypothetical protein
896	 52.07	-2	896495..897556	+	353	55377838	lpg2	rrnAC1017	-	LPS glycosyltransferase
897	 52.86	-2	897596..898363	-	255	55377839	-	rrnAC1018	-	glycosyltransferase
898	 52.21	-2	898429..899403	-	324	55377840	dpm1	rrnAC1019	-	dolichyl-phosphate beta-D-mannosyltransferase
899	 60.83	0	899675..900514	+	279	55377841	dpm2	rrnAC1020	-	dolichyl-P-glucose synthetase
900	 60.79	0	900543..901529	-	328	55377842	-	rrnAC1021	-	hypothetical protein
901	 61.69	0	901756..903201	+	481	55377843	-	rrnAC1022	-	hypothetical protein
902	 61.08	0	903198..903698	+	166	55377844	-	rrnAC1023	-	hypothetical protein
903	 60.17	0	903695..904648	+	317	55377845	-	rrnAC1024	-	hypothetical protein
904	 57.86	-1	904663..905673	-	336	55377846	moxR6	rrnAC1025	-	methanol dehydrogenase regulatory protein
905	 62.37	0	905666..906760	-	364	55377847	-	rrnAC1026	-	hypothetical protein
906	 59.78	0	906760..907035	-	91	55377848	-	rrnAC1027	-	hypothetical protein
907	 65.59	0	907132..910197	-	1021	55377849	lolC	rrnAC1028	-	putative permease
908	 63.27	0	910205..910969	-	254	55377850	-	rrnAC1029	-	ABC transporter ATP-binding protein
909	 65.30	0	910997..912685	-	562	55377851	nps	rrnAC1030	-	putative sodium/phosphate symporter
910	 62.47	0	912963..914987	-	674	55377852	-	rrnAC1031	-	hypothetical protein
911	 62.23	0	915197..916210	+	337	55377853	-	rrnAC1032	-	hypothetical protein
912	 62.38	0	916324..916860	+	178	55377854	-	rrnAC1033	-	hypothetical protein
913	 59.57	0	916985..917125	-	46	55377855	-	rrnAC1034	-	hypothetical protein
914	 56.12	-1	917323..919020	-	565	55377856	-	rrnAC1035	-	hypothetical protein
915	 57.56	-1	919348..920664	-	438	55377857	-	rrnAC1036	-	hypothetical protein
916	 63.56	0	921685..922167	+	160	55377858	-	rrnAC1037	-	hypothetical protein
917	 62.86	0	922213..923001	+	262	55377859	-	rrnAC1038	-	hypothetical protein
918	 52.70	-2	923143..924051	-	302	55377860	yafB-2	rrnAC1039	-	aldo/keto reductase family oxidoreductase
919	 50.61	-2	924389..925372	-	327	55377861	-	rrnAC1041	-	hypothetical protein
920	 52.40	-2	925813..927663	-	616	55377862	msbA-2	rrnAC1042	-	ABC transporter ATP-binding protein
921	 51.66	-2	928106..929038	+	310	55377863	lgtD	rrnAC1043	-	glycosyl transferase
922	 65.82	0	929261..930565	+	434	55377864	-	rrnAC1044	-	putative acetamidase/formamidase
923	 63.32	0	931083..931649	+	188	55377865	-	rrnAC1045	-	hypothetical protein
924	 60.94	0	931689..932456	-	255	55377866	-	rrnAC1046	-	hypothetical protein
925	 59.50	0	932760..933275	-	171	55377867	-	rrnAC1047	-	putative membrane-bound metal-dependent hydrolase
926	 51.07	-2	933693..934160	-	155	55377868	-	rrnAC1048	-	hypothetical protein
927	 51.21	-2	934153..934482	-	109	55377869	-	rrnAC1049	-	transcription regulator
928	 60.64	0	934601..935131	-	176	55377870	-	rrnAC1050	-	hypothetical protein
929	 58.42	-1	935131..935421	-	96	55377871	-	rrnAC1051	-	hypothetical protein
930	 56.94	-1	935747..936322	-	191	55377872	-	rrnAC1052	-	hypothetical protein
931	 49.18	-2	937406..938680	+	424	55377873	cdc6i	rrnAC1053	-	cell division control protein 6 homolog 6
932	 57.44	-1	939055..939444	+	129	55377874	tnp	rrnAC1054	-	putative transposase
933	 52.60	-2	939686..939877	+	63	55377875	-	rrnAC1055	-	hypothetical protein
934	 50.00	-2	940238..940465	+	75	55377876	-	rrnAC1056	-	hypothetical protein
935	 53.68	-2	940462..940869	+	135	55377877	stbB	rrnAC1057	-	plasmid stability protein StbB
936	 55.36	-1	940955..941476	-	173	55377878	-	rrnAC1059	-	hypothetical protein
937	 55.76	-1	941632..941952	-	106	55377879	-	rrnAC1060	-	hypothetical protein
938	 58.31	-1	942026..943951	-	641	55377880	trwB1	rrnAC1061	-	transfer complex protein
939	 59.47	0	943948..944961	-	337	55377881	-	rrnAC1062	-	hypothetical protein
940	 59.65	0	944964..946259	-	431	55377882	-	rrnAC1063	-	hypothetical protein
941	 62.67	0	947548..947997	-	149	55377883	-	rrnAC1064	-	hypothetical protein
942	 65.61	0	948030..948407	-	125	55377884	-	rrnAC1065	-	hypothetical protein
943	 61.12	0	949009..951081	+	690	55377885	prk1	rrnAC1067	-	protein kinase
944	 64.08	0	951081..953363	+	760	55377886	prkA	rrnAC1068	-	kinase anchor protein
945	 63.32	0	953354..954667	+	437	55377887	-	rrnAC1069	-	hypothetical protein
946	 62.35	0	954664..956703	+	679	55377888	spoVR	rrnAC1070	-	stage V sporulation protein R-like
947	 62.53	0	956813..957199	+	128	55377889	-	rrnAC1071	-	hypothetical protein
948	 63.42	0	957294..958619	+	441	55377890	cyp2	rrnAC1072	-	cytochrome P450
949	 62.60	0	958678..959070	+	130	55377891	-	rrnAC1073	-	hypothetical protein
950	 61.72	0	959094..961076	-	660	55377892	fadD3	rrnAC1074	-	long-chain fatty-acid-CoA ligase
951	 57.35	-1	961560..962708	+	382	55377893	-	rrnAC1075	-	hypothetical protein
952	 57.04	-1	962678..963871	+	397	55377894	capB	rrnAC1076	-	Mur ligase family CapB protein
953	 59.08	0	963881..965119	+	412	55377895	-	rrnAC1077	-	hypothetical protein
954	 57.42	-1	965204..966133	-	309	55377896	-	rrnAC1078	-	hypothetical protein
955	 50.48	-2	966250..966459	+	69	55377897	-	rrnAC1079	-	hypothetical protein
956	 55.56	-1	966565..966744	-	59	55377898	-	rrnAC1080	-	hypothetical protein
957	 65.99	0	966884..968065	-	393	55377899	rffH1	rrnAC1081	-	glucose-1-phosphate thymidylyltransferase
958	 55.83	-1	968170..969405	-	411	55377900	-	rrnAC1082	-	hypothetical protein
959	 63.73	0	970365..972374	-	669	55377901	hbd1	rrnAC1083	-	3-hydroxyacyl-CoA dehydrogenase
960	 61.92	0	972443..973600	+	385	55377902	acdG	rrnAC1084	-	acyl-CoA dehydrogenase
961	 59.69	0	973612..974127	-	171	55377903	tnp	rrnAC1085	-	transposase
962	 61.15	0	974036..974887	-	283	55377904	-	rrnAC1086	-	hypothetical protein
963	 65.77	0	975298..975855	+	185	55377905	cysE2	rrnAC1087	-	serine acetyltransferase
964	 65.36	0	975901..976512	+	203	55377906	alkA	rrnAC1088	-	DNA-3-methyladenine glycosylase
62.75	MEAN

4.09	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.