IslandPath Analysis: Haloarcula marismortui ATCC 43049



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 62.75   STD DEV: 4.09
Haloarcula marismortui ATCC 43049 chromosome I, complete sequence - 1..3131724
3131 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
795	 60.82	0	779163..780326	+	387	55377737	-	rrnAC0905	-	hypothetical protein
796	 63.18	0	780364..781569	+	401	55377738	ibp	rrnAC0906	-	iron-binding protein
797	 64.45	0	781571..783193	+	540	55377739	sfuB	rrnAC0907	-	iron ABC transporter permease protein
798	 63.04	0	783193..784323	+	376	55377740	potA4	rrnAC0908	-	spermidine/putrescine ABC transporter ATP-binding protein
799	 65.52	0	784320..786326	+	668	55377741	-	rrnAC0910	-	hypothetical protein
800	 63.93	0	786336..786920	+	194	55377742	-	rrnAC0911	-	hypothetical protein
801	 62.75	0	786951..787664	-	237	55377743	gtr-3	rrnAC0912	-	glycosyltransferase
802	 59.46	0	787714..788490	-	258	55377744	-	rrnAC0913	-	hypothetical protein
803	 60.40	0	788924..789976	-	350	55377745	trmB1	rrnAC0914	-	sugar-specific transcriptional regulator TrmB
804	 62.09	0	790150..791526	-	458	55377746	-	rrnAC0915	-	hypothetical protein
805	 62.37	0	791803..792942	-	379	55377747	sorD	rrnAC0917	-	sorbitol dehydrogenase
806	 63.60	0	792908..793984	-	358	55377748	gfo4	rrnAC0918	-	oxidoreductase
807	 53.43	-2	794010..794213	-	67	55377749	-	rrnAC0919	-	hypothetical protein
808	 60.40	0	794215..795411	-	398	55377750	msmX-2	rrnAC0920	-	sugar ABC transporter ATP-binding protein
809	 62.48	0	795416..796417	-	333	55377751	malFG-4	rrnAC0921	-	putative sugar ABC transporter permease protein
810	 59.84	0	796419..797399	-	326	55377752	malFG-5	rrnAC0922	-	putative ABC transporter permease protein
811	 63.99	0	797478..799007	-	509	55377753	rbsB-2	rrnAC0923	-	sugar ABC transporter substrate binding protein
812	 60.72	0	799240..800316	-	358	55377754	-	rrnAC0924	-	hypothetical protein
813	 60.68	0	800377..801411	-	344	55377755	yajO2	rrnAC0925	-	aldo/keto reductase family oxidoreductase
814	 62.56	0	801426..802301	+	291	55377756	-	rrnAC0926	-	hypothetical protein
815	 64.01	0	802638..803276	+	212	55377757	pyrE2	rrnAC0927	-	orotate phosphoribosyltransferase
816	 59.60	0	803392..803589	+	65	55377758	-	rrnAC0928	-	hypothetical protein
817	 66.50	0	803743..804909	+	388	55377759	acaB4	rrnAC0929	-	3-ketoacyl-CoA thiolase
818	 65.63	0	804906..805292	+	128	55377760	-	rrnAC0930	-	hypothetical protein
819	 65.29	0	805296..806237	-	313	55377761	-	rrnAC0931	-	hypothetical protein
820	 64.78	0	806345..807403	-	352	55377762	argK	rrnAC0933	-	ArgK protein
821	 61.57	0	807400..807870	-	156	55377763	mcmA3	rrnAC0934	-	putative methylmalonyl-CoA mutase
822	 61.39	0	808413..808772	+	119	55377764	gtr-8	rrnAC0935	-	putative glycosyltransferase
823	 58.66	-1	808775..809161	+	128	55377765	-	rrnAC0936	-	hypothetical protein
824	 64.10	0	809154..810011	+	285	55377766	ybaN	rrnAC0937	-	polysaccharide deacetylase
825	 65.36	0	810344..811030	+	228	55377767	-	rrnAC0938	-	hypothetical protein
826	 64.21	0	811059..812846	-	595	55377768	dpm6	rrnAC0939	-	dolichyl-phosphate-mannose-protein mannosyltransferase
827	 63.32	0	812889..813575	-	228	55377769	-	rrnAC0940	-	glycosyl transferase
828	 62.22	0	813711..815126	-	471	55377770	htr	rrnAC0942	-	MCP domain-containing signal transducer
829	 58.82	0	815318..815674	-	118	55377771	-	rrnAC0943	-	hypothetical protein
830	 64.52	0	815778..817127	-	449	55377772	-	rrnAC0944	-	putative sugar transporter
831	 58.63	-1	817426..817761	-	111	55377773	-	rrnAC0945	-	hypothetical protein
832	 60.26	0	817802..818347	-	181	55377774	-	rrnAC0946	-	hypothetical protein
833	 63.73	0	819125..820654	+	509	55377775	-	rrnAC0948	-	hypothetical protein
834	 67.85	+1	820651..821577	+	308	55377776	-	rrnAC0949	-	hypothetical protein
835	 69.67	+1	821577..822908	+	443	55377777	-	rrnAC0950	-	hypothetical protein
836	 64.64	0	822909..824336	+	475	55377778	-	rrnAC0951	-	glycosyl transferase
837	 64.01	0	824444..825649	+	401	55377779	moxR1	rrnAC0952	-	methanol dehydrogenase regulatory protein
838	 65.66	0	825701..826096	+	131	55377780	-	rrnAC0953	-	hypothetical protein
839	 66.89	+1	826166..828901	+	911	55377781	hel	rrnAC0954	-	DNA helicase
840	 68.09	+1	828902..830584	-	560	55377782	-	rrnAC0955	-	hypothetical protein
841	 63.69	0	830581..831117	-	178	55377783	-	rrnAC0956	-	hypothetical protein
842	 59.63	0	831192..831518	+	108	55377784	-	rrnAC0957	-	hypothetical protein
843	 63.22	0	831544..832182	-	212	55377785	icfA2	rrnAC0958	-	carbonic anhydrase
844	 63.21	0	832276..835026	-	916	55377786	yprA3	rrnAC0959	-	ATP-dependent helicase
845	 67.58	+1	835123..835998	+	291	55377787	dapA2	rrnAC0960	-	dihydrodipicolinate synthase
846	 64.85	0	836069..836893	+	274	55377788	-	rrnAC0961	-	hypothetical protein
847	 64.23	0	836916..837530	-	204	55377789	pcm3	rrnAC0962	-	protein-L-isoaspartate O-methyltransferase
848	 63.35	0	837814..838566	+	250	55377790	-	rrnAC0963	-	hypothetical protein
849	 62.69	0	838563..839720	-	385	55377791	kinA7	rrnAC0964	-	signal-transducing histidine kinase-like
850	 63.39	0	839839..840906	-	355	55377792	pelA	rrnAC0965	-	cell division protein pelota
851	 65.83	0	840992..841711	-	239	55377793	-	rrnAC0966	-	hypothetical protein
852	 68.12	+1	841850..842881	-	343	55377794	hypE	rrnAC0967	-	hydrogenase expression/formation protein
853	 65.09	0	842927..845080	-	717	55377795	-	rrnAC0969	-	hypothetical protein
854	 65.89	0	845117..846151	-	344	55377796	aor3	rrnAC0970	-	flavin-containing amine-oxidoreductase
855	 58.97	0	846419..850486	-	1355	55377797	csg4	rrnAC0971	-	cell surface glycoprotein related protein
856	 58.08	-1	850638..851522	+	294	55377798	tnp	rrnAC0972	-	putative ISH4 transposase
857	 62.44	0	851843..853498	-	551	55377799	-	rrnAC0974	-	hypothetical protein
858	 57.78	-1	853606..853740	+	44	55377800	-	rrnAC0975	-	hypothetical protein
859	 60.12	0	854107..855999	+	630	55377801	htr8	rrnAC0976	-	MCP domain-containing signal transducer
860	 65.64	0	856004..856492	-	162	55377802	-	rrnAC0977	-	hypothetical protein
861	 65.66	0	856533..858713	-	726	55377803	-	rrnAC0979	-	putative nuclease
862	 54.17	-2	858778..859041	-	87	55377804	-	rrnAC0980	-	hypothetical protein
863	 66.67	0	859068..859298	-	76	55377805	-	rrnAC0981	-	hypothetical protein
864	 63.56	0	859853..860431	-	192	55377806	ssuE1	rrnAC0982	-	NADPH-dependent FMN reductase
865	 56.14	-1	860540..860710	-	56	55377807	-	rrnAC0983	-	hypothetical protein
866	 61.97	0	860839..861285	-	148	55377808	mamA2	rrnAC0984	-	methylaspartate mutase subunit S
867	 63.33	0	861534..862073	+	179	55377809	-	rrnAC0985	-	hypothetical protein
868	 60.81	0	862147..863154	-	335	55377810	nce2	rrnAC0986	-	Na+/Ca2+-exchanging protein
869	 65.71	0	863202..864137	-	311	55377811	mutY	rrnAC0987	-	A/G-specific adenine glycosylase
870	 62.20	0	864262..866253	-	663	55377812	htlD	rrnAC0988	-	HTR-like protein
871	 61.16	0	866267..866593	+	108	55377813	-	rrnAC0989	-	hypothetical protein
872	 62.93	0	866590..867873	-	427	55377814	mgtC1	rrnAC0990	-	magnesium transporter accessory protein
873	 59.64	0	868447..870381	+	644	55377815	htlD	rrnAC0991	-	HTR-like protein
874	 59.06	0	870541..870816	-	91	55377816	-	rrnAC0992	-	DNA binding domain-containing protein
875	 67.50	+1	871745..872464	+	239	55377817	-	rrnAC0994	-	hypothetical protein
876	 67.91	+1	872468..872950	-	160	55377818	mutT6	rrnAC0995	-	Mut/nudix family protein
877	 63.87	0	872951..873844	-	297	55377819	folD1	rrnAC0996	-	methylenetetrahydrofolate dehydrogenase
878	 66.50	0	873920..874510	-	196	55377820	-	rrnAC0998	-	hypothetical protein
879	 64.42	0	874586..875833	-	415	55377821	glyA	rrnAC0999	-	serine hydroxymethyltransferase
880	 64.13	0	875987..878074	+	695	55377822	-	rrnAC1000	-	hypothetical protein
881	 62.64	0	878453..879271	+	272	55377823	-	rrnAC1001	-	hypothetical protein
882	 66.55	0	879303..881012	+	569	55377824	-	rrnAC1002	-	hypothetical protein
883	 61.44	0	881028..882176	-	382	55377825	-	rrnAC1003	-	hypothetical protein
884	 66.31	0	882280..883119	-	279	55377826	suhB1	rrnAC1004	-	inositol-1-monophosphatase
885	 54.17	-2	883191..883406	-	71	55377827	-	rrnAC1006	-	hypothetical protein
886	 53.92	-2	884016..884117	+	33	55377828	-	rrnAC1007	-	hypothetical protein
887	 52.38	-2	884204..884308	+	34	55377829	-	rrnAC1008	-	hypothetical protein
888	 59.62	0	884544..884756	-	70	55377830	-	rrnAC1009	-	hypothetical protein
889	 53.58	-2	885451..886512	+	353	55377831	rfbB1	rrnAC1010	-	dTDP-glucose 4-6-dehydratase
890	 58.08	-1	886485..887486	+	333	55377832	rffG	rrnAC1011	-	dTDP-glucose dehydratase
891	 56.74	-1	887770..887910	+	46	55377833	-	rrnAC1012	-	hypothetical protein
892	 35.39	-2	888331..889740	-	469	55377834	-	rrnAC1013	-	hypothetical protein
893	 37.52	-2	892287..893816	-	509	55377835	-	rrnAC1014	-	hypothetical protein
894	 47.80	-2	895032..896192	-	386	55377836	gtr-7	rrnAC1015	-	glycosyltransferase
62.75	MEAN

4.09	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.