IslandPath Analysis: Haloarcula marismortui ATCC 43049



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 62.75   STD DEV: 4.09
Haloarcula marismortui ATCC 43049 chromosome I, complete sequence - 1..3131724
3131 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
744	 68.97	+1	735561..735995	-	144	55377686	-	rrnAC0849	-	hypothetical protein
745	 66.48	0	736062..737111	-	349	55377687	-	rrnAC0850	-	hypothetical protein
746	 61.72	0	737203..737505	-	100	55377688	-	rrnAC0851	-	hypothetical protein
747	 64.80	0	737498..738463	-	321	55377689	-	rrnAC0852	-	hypothetical protein
748	 65.50	0	738592..738762	-	56	55377690	-	rrnAC0853	-	hypothetical protein
749	 64.49	0	739189..739878	+	229	55377691	pebP	rrnAC0854	-	phosphatidylethanolamine-binding protein
750	 61.49	0	739887..740813	-	308	55377692	galE4	rrnAC0855	-	UDP-glucose 4-epimerase
751	 66.52	0	740931..741599	+	222	55377693	-	rrnAC0856	-	hypothetical protein
752	 67.40	+1	741596..742138	+	180	55377694	-	rrnAC0857	-	tRNA 2'-O-methylase
753	 65.56	0	742194..743546	+	450	55377695	-	rrnAC0858	-	arylsulfatase
754	 64.34	0	743543..744100	+	185	55377696	folA1	rrnAC0859	-	dihydrofolate reductase
755	 56.04	-1	744172..744444	+	90	55377697	-	rrnAC0860	-	hypothetical protein
756	 60.08	0	744632..745162	+	176	55377698	tfeA	rrnAC0861	-	transcription initiation factor IIE alpha subunit
757	 65.78	0	745162..745836	+	224	55377699	-	rrnAC0862	-	hypothetical protein
758	 64.50	0	745846..746628	+	260	55377700	-	rrnAC0863	-	hypothetical protein
759	 69.40	+1	746710..747552	+	280	55377701	nop56/58	rrnAC0864	-	nucleolar protein-like
760	 67.30	+1	747549..748181	+	210	55377702	fib	rrnAC0865	-	fibrillarin
761	 65.46	0	748289..749368	+	359	55377703	gcs2	rrnAC0866	-	carboxylate-amine ligase
762	 62.77	0	749480..750043	+	187	55377704	-	rrnAC0867	-	transcription regulator
763	 65.85	0	750114..750602	+	162	55377705	coaD2	rrnAC0868	-	phosphopantetheine adenylyltransferase
764	 65.37	0	750603..750911	-	102	55377706	-	rrnAC0869	-	transcription factor TFIIB
765	 60.32	0	751531..751719	+	62	55377707	-	rrnAC0871	-	hypothetical protein
766	 63.69	0	752072..752575	+	167	55377708	-	rrnAC0872	-	DNA binding domain-containing protein
767	 63.74	0	752613..753740	+	375	55377709	acdA	rrnAC0874	-	acyl-CoA dehydrogenase
768	 65.68	0	753927..754331	+	134	55377710	-	rrnAC0875	-	putative haloacid dehalogenase-like hydrolase
769	 67.23	+1	754310..754486	-	58	55377711	-	rrnAC0876	-	hypothetical protein
770	 65.01	0	754662..755444	+	260	55377712	panB	rrnAC0878	-	3-methyl-2-oxobutanoate hydroxymethyltransferase
771	 62.52	0	755467..756189	-	240	55377713	coxB3	rrnAC0879	-	cytochrome c oxidase subunit II
772	 61.37	0	756366..758648	+	760	55377714	coxA4	rrnAC0880	-	cytochrome C oxidase subunit I
773	 66.48	0	758652..759176	+	174	55377715	-	rrnAC0881	-	hypothetical protein
774	 65.81	0	759199..760014	-	271	55377716	coxC	rrnAC0882	-	cytochrome c oxidase subunit III
775	 64.29	0	760732..761235	+	167	55377717	bioB	rrnAC0883	-	biotin synthase
776	 65.25	0	761238..762365	+	375	55377718	-	rrnAC0884	-	hypothetical protein
777	 65.17	0	762387..763589	+	400	55377719	bioF	rrnAC0885	-	8-amino-7-oxononanoate synthase
778	 57.50	-1	764201..764320	+	39	55377720	-	rrnAC0886	-	hypothetical protein
779	 63.88	0	764517..765593	-	358	55377721	cbiA1	rrnAC0887	-	cobyrinic acid ac-diamide synthase
780	 62.96	0	765590..767695	-	701	55377722	scs	rrnAC0888	-	succinyl-CoA synthetase
781	 60.72	0	767828..768214	+	128	55377723	-	rrnAC0889	-	hypothetical protein
782	 59.81	0	768390..768929	+	179	55377724	frt	rrnAC0890	-	ferritin
783	 58.67	0	769070..769219	-	49	55377725	-	rrnAC0891	-	hypothetical protein
784	 61.37	0	769368..769952	+	194	55377726	-	rrnAC0892	-	hypothetical protein
785	 62.71	0	770031..770510	+	159	55377727	-	rrnAC0893	-	hypothetical protein
786	 63.04	0	770600..772171	+	523	55377728	cpdB2	rrnAC0894	-	2'3'-cyclic-nucleotide 2'-phosphodiesterase
787	 62.73	0	772172..772552	-	126	55377729	-	rrnAC0895	-	hypothetical protein
788	 62.95	0	772549..773841	-	430	55377730	acaB3	rrnAC0896	-	3-ketoacyl-CoA thiolase
789	 64.73	0	773765..774592	-	275	55377731	-	rrnAC0897	-	hypothetical protein
790	 62.21	0	774811..775977	-	388	55377732	-	rrnAC0899	-	hypothetical protein
791	 59.68	0	776121..776306	+	61	55377733	-	rrnAC0900	-	hypothetical protein
792	 68.27	+1	776303..776614	-	103	55377734	-	rrnAC0901	-	hypothetical protein
793	 63.19	0	776616..778199	-	527	55377735	accA	rrnAC0903	-	acetyl-CoA carboxylase alpha subunit
794	 60.48	0	778201..778944	-	247	55377736	fabG1	rrnAC0904	-	3-oxoacyl-[acyl-carrier protein] reductase
795	 60.82	0	779163..780326	+	387	55377737	-	rrnAC0905	-	hypothetical protein
796	 63.18	0	780364..781569	+	401	55377738	ibp	rrnAC0906	-	iron-binding protein
797	 64.45	0	781571..783193	+	540	55377739	sfuB	rrnAC0907	-	iron ABC transporter permease protein
798	 63.04	0	783193..784323	+	376	55377740	potA4	rrnAC0908	-	spermidine/putrescine ABC transporter ATP-binding protein
799	 65.52	0	784320..786326	+	668	55377741	-	rrnAC0910	-	hypothetical protein
800	 63.93	0	786336..786920	+	194	55377742	-	rrnAC0911	-	hypothetical protein
801	 62.75	0	786951..787664	-	237	55377743	gtr-3	rrnAC0912	-	glycosyltransferase
802	 59.46	0	787714..788490	-	258	55377744	-	rrnAC0913	-	hypothetical protein
803	 60.40	0	788924..789976	-	350	55377745	trmB1	rrnAC0914	-	sugar-specific transcriptional regulator TrmB
804	 62.09	0	790150..791526	-	458	55377746	-	rrnAC0915	-	hypothetical protein
805	 62.37	0	791803..792942	-	379	55377747	sorD	rrnAC0917	-	sorbitol dehydrogenase
806	 63.60	0	792908..793984	-	358	55377748	gfo4	rrnAC0918	-	oxidoreductase
807	 53.43	-2	794010..794213	-	67	55377749	-	rrnAC0919	-	hypothetical protein
808	 60.40	0	794215..795411	-	398	55377750	msmX-2	rrnAC0920	-	sugar ABC transporter ATP-binding protein
809	 62.48	0	795416..796417	-	333	55377751	malFG-4	rrnAC0921	-	putative sugar ABC transporter permease protein
810	 59.84	0	796419..797399	-	326	55377752	malFG-5	rrnAC0922	-	putative ABC transporter permease protein
811	 63.99	0	797478..799007	-	509	55377753	rbsB-2	rrnAC0923	-	sugar ABC transporter substrate binding protein
812	 60.72	0	799240..800316	-	358	55377754	-	rrnAC0924	-	hypothetical protein
813	 60.68	0	800377..801411	-	344	55377755	yajO2	rrnAC0925	-	aldo/keto reductase family oxidoreductase
814	 62.56	0	801426..802301	+	291	55377756	-	rrnAC0926	-	hypothetical protein
815	 64.01	0	802638..803276	+	212	55377757	pyrE2	rrnAC0927	-	orotate phosphoribosyltransferase
816	 59.60	0	803392..803589	+	65	55377758	-	rrnAC0928	-	hypothetical protein
817	 66.50	0	803743..804909	+	388	55377759	acaB4	rrnAC0929	-	3-ketoacyl-CoA thiolase
818	 65.63	0	804906..805292	+	128	55377760	-	rrnAC0930	-	hypothetical protein
819	 65.29	0	805296..806237	-	313	55377761	-	rrnAC0931	-	hypothetical protein
820	 64.78	0	806345..807403	-	352	55377762	argK	rrnAC0933	-	ArgK protein
821	 61.57	0	807400..807870	-	156	55377763	mcmA3	rrnAC0934	-	putative methylmalonyl-CoA mutase
822	 61.39	0	808413..808772	+	119	55377764	gtr-8	rrnAC0935	-	putative glycosyltransferase
823	 58.66	-1	808775..809161	+	128	55377765	-	rrnAC0936	-	hypothetical protein
824	 64.10	0	809154..810011	+	285	55377766	ybaN	rrnAC0937	-	polysaccharide deacetylase
825	 65.36	0	810344..811030	+	228	55377767	-	rrnAC0938	-	hypothetical protein
826	 64.21	0	811059..812846	-	595	55377768	dpm6	rrnAC0939	-	dolichyl-phosphate-mannose-protein mannosyltransferase
827	 63.32	0	812889..813575	-	228	55377769	-	rrnAC0940	-	glycosyl transferase
828	 62.22	0	813711..815126	-	471	55377770	htr	rrnAC0942	-	MCP domain-containing signal transducer
829	 58.82	0	815318..815674	-	118	55377771	-	rrnAC0943	-	hypothetical protein
830	 64.52	0	815778..817127	-	449	55377772	-	rrnAC0944	-	putative sugar transporter
831	 58.63	-1	817426..817761	-	111	55377773	-	rrnAC0945	-	hypothetical protein
832	 60.26	0	817802..818347	-	181	55377774	-	rrnAC0946	-	hypothetical protein
833	 63.73	0	819125..820654	+	509	55377775	-	rrnAC0948	-	hypothetical protein
834	 67.85	+1	820651..821577	+	308	55377776	-	rrnAC0949	-	hypothetical protein
835	 69.67	+1	821577..822908	+	443	55377777	-	rrnAC0950	-	hypothetical protein
836	 64.64	0	822909..824336	+	475	55377778	-	rrnAC0951	-	glycosyl transferase
837	 64.01	0	824444..825649	+	401	55377779	moxR1	rrnAC0952	-	methanol dehydrogenase regulatory protein
838	 65.66	0	825701..826096	+	131	55377780	-	rrnAC0953	-	hypothetical protein
839	 66.89	+1	826166..828901	+	911	55377781	hel	rrnAC0954	-	DNA helicase
840	 68.09	+1	828902..830584	-	560	55377782	-	rrnAC0955	-	hypothetical protein
841	 63.69	0	830581..831117	-	178	55377783	-	rrnAC0956	-	hypothetical protein
842	 59.63	0	831192..831518	+	108	55377784	-	rrnAC0957	-	hypothetical protein
843	 63.22	0	831544..832182	-	212	55377785	icfA2	rrnAC0958	-	carbonic anhydrase
62.75	MEAN

4.09	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.