IslandPathversion 1.0

IslandPath Analysis: Haloarcula marismortui ATCC 43049



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 62.75 STD DEV: 4.09
Haloarcula marismortui ATCC 43049 chromosome I, complete sequence - 1..3131724
3131 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
701	 62.81	0	692559..692843	+	94	55377643	-	rrnAC0800	-	hypothetical protein
702	 64.43	0	692818..693888	+	356	55377644	-	rrnAC0801	-	hypothetical protein
703	 58.57	-1	693925..694455	-	176	55377645	-	rrnAC0802	-	hypothetical protein
704	 65.31	0	694531..696075	-	514	55377646	-	rrnAC0803	-	hypothetical protein
705	 61.03	0	696197..696622	+	141	55377647	-	rrnAC0805	-	hypothetical protein
706	 56.30	-1	696662..696796	-	44	55377648	-	rrnAC0806	-	putative C2H2 zinc finger DNA-binding protein
707	 65.72	0	696882..698999	+	705	55377649	cdc48c	rrnAC0807	-	cell division control protein 48
708	 65.19	0	699264..700277	-	337	55377650	-	rrnAC0808	-	hypothetical protein
709	 67.03	+1	700356..701174	-	272	55377651	nitA	rrnAC0810	-	nitrilase
710	 58.56	-1	701171..701602	-	143	55377652	-	rrnAC0811	-	hypothetical protein
711	 62.72	0	701670..701897	-	75	55377653	-	rrnAC0812	-	hypothetical protein
712	 62.34	0	701961..702191	-	76	55377654	-	rrnAC0813	-	hypothetical protein
713	 61.06	0	702258..703166	+	302	55377655	nosY	rrnAC0814	-	membrane protein NosY precursor
714	 56.14	-1	703163..703561	-	132	55377656	tnp	rrnAC0815	-	transposase
715	 59.45	0	703797..705071	+	424	55377657	tnp	rrnAC0816	-	transposase
716	 61.61	0	705046..705480	+	144	55377658	-	rrnAC0817	-	hypothetical protein
717	 56.71	-1	705500..705730	-	76	55377659	-	rrnAC0818	-	hypothetical protein
718	 62.22	0	705874..706908	-	344	55377660	-	rrnAC0819	-	regulatory protein
719	 67.13	+1	707007..708077	-	356	55377661	-	rrnAC0821	-	ATP-NAD kinase
720	 65.23	0	708274..708969	-	231	55377662	mogA	rrnAC0822	-	molybdenumm cofactor biosynthesis protein
721	 64.77	0	709265..710479	-	404	55377663	-	rrnAC0823	-	hypothetical protein
722	 61.47	0	710799..711914	+	371	55377664	livH-4	rrnAC0824	-	branched-chain amino acid ABC transporter permease protein
723	 64.50	0	711812..713194	+	460	55377665	livM	rrnAC0825	-	high-affinity branched-chain amino acid transport protein
724	 63.06	0	713187..714017	+	276	55377666	livG-4	rrnAC0827	-	branched-chain amino acid ABC transporter ATP-binding protein
725	 62.70	0	714014..714769	+	251	55377667	livF-4	rrnAC0829	-	branched-chain amino acid ABC transporter ATP-binding protein
726	 64.12	0	714801..716177	-	458	55377668	-	rrnAC0830	-	hypothetical protein
727	 61.93	0	716366..716977	-	203	55377669	sodA	rrnAC0831	-	superoxide dismutase [Mn] 2
728	 64.66	0	717158..718555	-	465	55377670	phrB1	rrnAC0832	-	deoxyribodipyrimidine photolyase
729	 62.00	0	718599..719456	+	285	55377671	ech2	rrnAC0833	-	enoyl-CoA hydratase
730	 55.49	-1	719606..720124	+	172	55377672	-	rrnAC0834	-	hypothetical protein
731	 57.45	-1	720181..720462	-	93	55377673	-	rrnAC0835	-	hypothetical protein
732	 56.48	-1	720534..720749	-	71	55377674	csg2	rrnAC0836	-	surface glycoprotein precursor
733	 67.34	+1	721018..722355	+	445	55377675	menF	rrnAC0837	-	menaquinone-specific isochorismate synthase
734	 66.78	0	722304..724130	+	608	55377676	menD	rrnAC0838	-	2-succinyl-6-hydroxy-2 4-cyclohexadiene-1-carboxylate synthase
735	 64.57	0	724134..725087	-	317	55377677	dnaJ	rrnAC0839	-	chaperone protein DnaJ
736	 58.33	-1	725146..725457	-	103	55377679	-	rrnAC0840	-	hypothetical protein
737	 65.44	0	725445..726506	+	353	55377678	ech1	rrnAC0841	-	naphthoate synthase
738	 62.11	0	726528..726878	-	116	55377680	cinR	rrnAC0842	-	transcription repressor CinR
739	 68.81	+1	727698..729284	-	528	55377681	menE	rrnAC0843	-	O-succinylbenzoic acid-CoA ligase
740	 70.01	+1	729214..730260	-	348	55377682	ykfB1	rrnAC0844	-	chloromuconate cycloisomerase
741	 65.73	0	730257..731216	-	319	55377683	menA	rrnAC0845	-	1,4-dihydroxy-2-naphthoate octaprenyltransferase
742	 63.21	0	731351..732970	+	539	55377684	alkK3	rrnAC0847	-	medium-chain acyl-CoA ligase
743	 61.01	0	733130..735376	+	748	55377685	htlD	rrnAC0848	-	HTR-like protein
744	 68.97	+1	735561..735995	-	144	55377686	-	rrnAC0849	-	hypothetical protein
745	 66.48	0	736062..737111	-	349	55377687	-	rrnAC0850	-	hypothetical protein
746	 61.72	0	737203..737505	-	100	55377688	-	rrnAC0851	-	hypothetical protein
747	 64.80	0	737498..738463	-	321	55377689	-	rrnAC0852	-	hypothetical protein
748	 65.50	0	738592..738762	-	56	55377690	-	rrnAC0853	-	hypothetical protein
749	 64.49	0	739189..739878	+	229	55377691	pebP	rrnAC0854	-	phosphatidylethanolamine-binding protein
750	 61.49	0	739887..740813	-	308	55377692	galE4	rrnAC0855	-	UDP-glucose 4-epimerase
751	 66.52	0	740931..741599	+	222	55377693	-	rrnAC0856	-	hypothetical protein
752	 67.40	+1	741596..742138	+	180	55377694	-	rrnAC0857	-	tRNA 2'-O-methylase
753	 65.56	0	742194..743546	+	450	55377695	-	rrnAC0858	-	arylsulfatase
754	 64.34	0	743543..744100	+	185	55377696	folA1	rrnAC0859	-	dihydrofolate reductase
755	 56.04	-1	744172..744444	+	90	55377697	-	rrnAC0860	-	hypothetical protein
756	 60.08	0	744632..745162	+	176	55377698	tfeA	rrnAC0861	-	transcription initiation factor IIE alpha subunit
757	 65.78	0	745162..745836	+	224	55377699	-	rrnAC0862	-	hypothetical protein
758	 64.50	0	745846..746628	+	260	55377700	-	rrnAC0863	-	hypothetical protein
759	 69.40	+1	746710..747552	+	280	55377701	nop56/58	rrnAC0864	-	nucleolar protein-like
760	 67.30	+1	747549..748181	+	210	55377702	fib	rrnAC0865	-	fibrillarin
761	 65.46	0	748289..749368	+	359	55377703	gcs2	rrnAC0866	-	carboxylate-amine ligase
762	 62.77	0	749480..750043	+	187	55377704	-	rrnAC0867	-	transcription regulator
763	 65.85	0	750114..750602	+	162	55377705	coaD2	rrnAC0868	-	phosphopantetheine adenylyltransferase
764	 65.37	0	750603..750911	-	102	55377706	-	rrnAC0869	-	transcription factor TFIIB
765	 60.32	0	751531..751719	+	62	55377707	-	rrnAC0871	-	hypothetical protein
766	 63.69	0	752072..752575	+	167	55377708	-	rrnAC0872	-	DNA binding domain-containing protein
767	 63.74	0	752613..753740	+	375	55377709	acdA	rrnAC0874	-	acyl-CoA dehydrogenase
768	 65.68	0	753927..754331	+	134	55377710	-	rrnAC0875	-	putative haloacid dehalogenase-like hydrolase
769	 67.23	+1	754310..754486	-	58	55377711	-	rrnAC0876	-	hypothetical protein
770	 65.01	0	754662..755444	+	260	55377712	panB	rrnAC0878	-	3-methyl-2-oxobutanoate hydroxymethyltransferase
771	 62.52	0	755467..756189	-	240	55377713	coxB3	rrnAC0879	-	cytochrome c oxidase subunit II
772	 61.37	0	756366..758648	+	760	55377714	coxA4	rrnAC0880	-	cytochrome C oxidase subunit I
773	 66.48	0	758652..759176	+	174	55377715	-	rrnAC0881	-	hypothetical protein
774	 65.81	0	759199..760014	-	271	55377716	coxC	rrnAC0882	-	cytochrome c oxidase subunit III
775	 64.29	0	760732..761235	+	167	55377717	bioB	rrnAC0883	-	biotin synthase
776	 65.25	0	761238..762365	+	375	55377718	-	rrnAC0884	-	hypothetical protein
777	 65.17	0	762387..763589	+	400	55377719	bioF	rrnAC0885	-	8-amino-7-oxononanoate synthase
778	 57.50	-1	764201..764320	+	39	55377720	-	rrnAC0886	-	hypothetical protein
779	 63.88	0	764517..765593	-	358	55377721	cbiA1	rrnAC0887	-	cobyrinic acid ac-diamide synthase
780	 62.96	0	765590..767695	-	701	55377722	scs	rrnAC0888	-	succinyl-CoA synthetase
781	 60.72	0	767828..768214	+	128	55377723	-	rrnAC0889	-	hypothetical protein
782	 59.81	0	768390..768929	+	179	55377724	frt	rrnAC0890	-	ferritin
783	 58.67	0	769070..769219	-	49	55377725	-	rrnAC0891	-	hypothetical protein
784	 61.37	0	769368..769952	+	194	55377726	-	rrnAC0892	-	hypothetical protein
785	 62.71	0	770031..770510	+	159	55377727	-	rrnAC0893	-	hypothetical protein
786	 63.04	0	770600..772171	+	523	55377728	cpdB2	rrnAC0894	-	2'3'-cyclic-nucleotide 2'-phosphodiesterase
787	 62.73	0	772172..772552	-	126	55377729	-	rrnAC0895	-	hypothetical protein
788	 62.95	0	772549..773841	-	430	55377730	acaB3	rrnAC0896	-	3-ketoacyl-CoA thiolase
789	 64.73	0	773765..774592	-	275	55377731	-	rrnAC0897	-	hypothetical protein
790	 62.21	0	774811..775977	-	388	55377732	-	rrnAC0899	-	hypothetical protein
791	 59.68	0	776121..776306	+	61	55377733	-	rrnAC0900	-	hypothetical protein
792	 68.27	+1	776303..776614	-	103	55377734	-	rrnAC0901	-	hypothetical protein
793	 63.19	0	776616..778199	-	527	55377735	accA	rrnAC0903	-	acetyl-CoA carboxylase alpha subunit
794	 60.48	0	778201..778944	-	247	55377736	fabG1	rrnAC0904	-	3-oxoacyl-[acyl-carrier protein] reductase
795	 60.82	0	779163..780326	+	387	55377737	-	rrnAC0905	-	hypothetical protein
796	 63.18	0	780364..781569	+	401	55377738	ibp	rrnAC0906	-	iron-binding protein
797	 64.45	0	781571..783193	+	540	55377739	sfuB	rrnAC0907	-	iron ABC transporter permease protein
798	 63.04	0	783193..784323	+	376	55377740	potA4	rrnAC0908	-	spermidine/putrescine ABC transporter ATP-binding protein
799	 65.52	0	784320..786326	+	668	55377741	-	rrnAC0910	-	hypothetical protein
800	 63.93	0	786336..786920	+	194	55377742	-	rrnAC0911	-	hypothetical protein
62.75	MEAN

4.09	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.