IslandPathversion 1.0

IslandPath Analysis: Haloarcula marismortui ATCC 43049



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 62.75 STD DEV: 4.09
Haloarcula marismortui ATCC 43049 chromosome I, complete sequence - 1..3131724
3131 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
602	 66.84	+1	597969..599123	+	384	55377544	-	rrnAC0688	-	hypothetical protein
603	 64.36	0	599120..600160	+	346	55377545	citE1	rrnAC0690	-	citrate lyase beta chain
604	 65.77	0	600176..601294	-	372	55377546	aspC4	rrnAC0691	-	aspartate aminotransferase
605	 61.11	0	601333..601476	-	47	55377547	-	rrnAC0692	-	hypothetical protein
606	 66.47	0	601555..602064	+	169	55377548	cinA	rrnAC0693	-	competence/damage-inducible protein CinA
607	 59.76	0	602101..602607	+	168	55377549	-	rrnAC0695	-	putative membrane-bound metal-dependent hydrolase
608	 60.44	0	602604..603503	-	299	55377550	-	rrnAC0696	-	hypothetical protein
609	 63.24	0	604112..604549	-	145	55377551	nusG	rrnAC0698	-	transcription antitermination protein NusG
610	 59.44	0	604554..604733	-	59	55377552	secE	rrnAC0700	-	preprotein translocase subunit SecE
611	 62.47	0	604883..607336	-	817	55377553	htr18	rrnAC0701	-	MCP domain-containing signal transducer
612	 62.71	0	607333..608571	-	412	55377554	-	rrnAC0702	-	leucine/isoleucine/valine-binding protein
613	 63.39	0	608700..609860	-	386	55377555	ftsZ1	rrnAC0703	-	cell division protein FtsZ
614	 64.68	0	609964..611319	-	451	55377556	-	rrnAC0704	-	hypothetical protein
615	 62.65	0	611319..612788	-	489	55377557	nce1	rrnAC0706	-	Na+/Ca2+-exchanging protein
616	 66.29	0	612814..613611	+	265	55377558	aroE	rrnAC0707	-	shikimate 5-dehydrogenase
617	 62.24	0	613662..614249	+	195	55377559	-	rrnAC0708	-	hypothetical protein
618	 66.94	+1	614320..615789	+	489	55377560	trpE1	rrnAC0709	-	anthranilate synthase component I
619	 64.63	0	615786..616520	+	244	55377561	trpD2	rrnAC0710	-	anthranilate synthase component II
620	 68.38	+1	616505..617377	+	290	55377562	ilvE2	rrnAC0711	-	branched-chain amino acid aminotransferase
621	 57.04	-1	617461..617886	+	141	55377563	-	rrnAC0713	-	oxidoreductase
622	 59.80	0	617924..618229	-	101	55377564	-	rrnAC0715	-	hypothetical protein
623	 63.09	0	618346..619212	+	288	55377565	usp6	rrnAC0716	-	universal stress protein
624	 65.81	0	619284..619982	-	232	55377566	-	rrnAC0717	-	FAD/NAD binding oxidoreductase
625	 63.15	0	620125..621885	+	586	55377567	porA	rrnAC0718	-	pyruvate ferredoxin oxidoreductase subunit alpha
626	 62.96	0	621882..622745	+	287	55377568	porB	rrnAC0719	-	2-oxoglutarate ferredoxin oxidoreductase subunit beta
627	 63.90	0	622995..623789	+	264	55377569	ubiE3	rrnAC0720	-	hypothetical protein
628	 63.23	0	623869..625263	+	464	55377570	phr1	rrnAC0721	-	photolyase/cryptochrome
629	 61.90	0	625293..625502	-	69	55377571	mop	rrnAC0722	-	molybdenum-pterin binding protein
630	 63.98	0	625588..626070	-	160	55377572	-	rrnAC0723	-	putative membrane-bound metal-dependent hydrolase
631	 64.12	0	626070..626618	-	182	55377573	-	rrnAC0724	-	hypothetical protein
632	 64.10	0	626687..627856	-	389	55377574	-	rrnAC0725	-	hypothetical protein
633	 61.89	0	627968..629203	+	411	55377575	-	rrnAC0726	-	hypothetical protein
634	 64.99	0	629258..629971	+	237	55377576	-	rrnAC0727	-	ATP-NAD kinase
635	 56.71	-1	630013..630474	+	153	55377577	-	rrnAC0728	-	hypothetical protein
636	 59.26	0	630930..631199	-	89	55377578	-	rrnAC0729	-	hypothetical protein
637	 61.00	0	631210..631509	-	99	55377579	-	rrnAC0730	-	hypothetical protein
638	 62.88	0	631621..632385	-	254	55377580	-	rrnAC0731	-	cytochrome b(C-terminal)/b6
639	 58.71	0	632390..633193	-	267	55377581	petB1	rrnAC0732	-	cytochrome b6
640	 58.82	0	633197..634063	-	288	55377582	-	rrnAC0733	-	Rieske (2Fe-2S) domain-containing protein
641	 58.57	-1	634065..634484	-	139	55377583	-	rrnAC0734	-	hypothetical protein
642	 65.75	0	634484..635140	-	218	55377584	hcp8	rrnAC0735	-	halocyanin precursor-like
643	 64.61	0	635205..636128	-	307	55377585	-	rrnAC0736	-	hypothetical protein
644	 61.28	0	636216..636698	+	160	55377586	-	rrnAC0737	-	hypothetical protein
645	 61.93	0	636786..637292	+	168	55377587	usp29	rrnAC0738	-	universal stress protein
646	 62.57	0	637309..637992	-	227	55377588	nthA	rrnAC0739	-	endonuclease III
647	 61.00	0	638329..638628	+	99	55377589	hat1	rrnAC0740	-	acetyltransferase
648	 61.48	0	638684..639223	+	179	55377590	hat2	rrnAC0741	-	acetyltransferase
649	 66.45	0	639224..639679	-	151	55377591	top2	rrnAC0742	-	topoisomerase DNA binding C4 zinc finger
650	 59.15	0	639877..640182	+	101	55377592	-	rrnAC0743	-	PRC-barrel domain-containing protein
651	 61.96	0	640179..641645	-	488	55377593	-	rrnAC0744	-	hypothetical protein
652	 60.32	0	642329..642769	-	146	55377594	yyaI	rrnAC0745	-	acetyltransferase
653	 65.52	0	643286..644770	-	494	55377595	guaB3	rrnAC0748	-	inosine-5'-monophosphate dehydrogenase
654	 69.93	+1	645184..646071	+	295	55377596	-	rrnAC0749	-	hypothetical protein
655	 58.77	0	646113..646340	+	75	55377597	-	rrnAC0750	-	hypothetical protein
656	 61.25	0	646930..647631	+	233	55377598	icfA1	rrnAC0751	-	carbonic anhydrase
657	 57.14	-1	647707..648000	-	97	55377599	-	rrnAC0752	-	hypothetical protein
658	 67.20	+1	647997..648932	-	311	55377600	aroK	rrnAC0753	-	shikimate kinase
659	 59.06	0	649263..649946	+	227	55377601	trkA1	rrnAC0754	-	Trk potassium uptake system protein
660	 62.83	0	649948..651642	+	564	55377602	trkH3	rrnAC0755	-	TRK potassium uptake system protein
661	 57.98	-1	651666..652022	-	118	55377603	-	rrnAC0756	-	hypothetical protein
662	 59.70	0	652096..653631	-	511	55377604	trkH2	rrnAC0757	-	potassium uptake protein TrkH
663	 61.62	0	653900..654355	+	151	55377605	usp17	rrnAC0758	-	universal stress protein
664	 61.63	0	654352..656616	+	754	55377606	cat	rrnAC0759	-	cationic amino acid transporter
665	 59.10	0	656629..657051	-	140	55377607	-	rrnAC0760	-	hypothetical protein
666	 59.35	0	657115..659274	-	719	55377608	-	rrnAC0761	-	hypothetical protein
667	 60.05	0	659534..659956	-	140	55377609	-	rrnAC0762	-	hypothetical protein
668	 67.88	+1	659973..660713	-	246	55377610	csg3	rrnAC0764	-	cell surface protein
669	 61.74	0	660757..663435	-	892	55377611	-	rrnAC0766	-	putative cell surface protein
670	 65.97	0	663727..664014	-	95	55377612	-	rrnAC0767	-	hypothetical protein
671	 63.92	0	664101..664391	+	96	55377613	-	rrnAC0768	-	DNA binding putative transcriptional regulator
672	 65.10	0	664481..664735	+	84	55377614	-	rrnAC0769	-	hypothetical protein
673	 63.19	0	664732..665880	-	382	55377615	acdB	rrnAC0770	-	acyl-CoA dehydrogenase
674	 59.91	0	665986..666843	-	285	55377616	paaH	rrnAC0771	-	3-hydroxybutyryl-CoA dehydrogenase
675	 62.44	0	667112..667987	+	291	55377617	fbp2	rrnAC0772	-	fructose-1,6-bisphosphatase
676	 59.17	0	668006..670060	-	684	55377618	-	rrnAC0773	-	hypothetical protein
677	 65.59	0	670494..670679	+	61	55377619	-	rrnAC0774	-	hypothetical protein
678	 62.77	0	670875..672131	+	418	55377620	gdhA2	rrnAC0775	-	NAD(P)-specific glutamate dehydrogenase
679	 62.96	0	672195..672680	+	161	55377621	-	rrnAC0776	-	hypothetical protein
680	 67.48	+1	673242..673733	+	163	55377622	-	rrnAC0777	-	hypothetical protein
681	 62.64	0	673750..674544	-	264	55377623	-	rrnAC0778	-	hypothetical protein
682	 62.51	0	674574..675488	+	304	55377624	acdE	rrnAC0779	-	acyl-CoA dehydrogenase
683	 63.08	0	675489..675767	+	92	55377625	acdF	rrnAC0780	-	acyl-CoA dehydrogenase
684	 64.03	0	675783..676199	-	138	55377626	usp30	rrnAC0781	-	universal stress protein
685	 63.80	0	676255..677718	-	487	55377627	-	rrnAC0783	-	hypothetical protein
686	 60.20	0	677863..678465	+	200	55377628	doxD1	rrnAC0784	-	terminal quinol oxidase
687	 62.96	0	678480..678776	+	98	55377629	-	rrnAC0785	-	hypothetical protein
688	 63.49	0	678968..679660	+	230	55377630	-	rrnAC0786	-	hypothetical protein
689	 65.79	0	679733..680419	+	228	55377631	pssA	rrnAC0788	-	CDP-diacylglycerol-serine O phosphatidyltransferase
690	 58.58	-1	680545..682275	+	576	55377632	-	rrnAC0789	-	putative PAS/PAC sensing his kinase
691	 66.15	0	682347..683123	-	258	55377633	est	rrnAC0790	-	carboxylesterase
692	 60.98	0	683271..683516	+	81	55377634	-	rrnAC0791	-	hypothetical protein
693	 65.70	0	683516..685789	+	757	55377635	cdc48b	rrnAC0792	-	cell division control protein 48
694	 59.10	0	685844..686596	-	250	55377636	-	rrnAC0793	-	hypothetical protein
695	 62.04	0	686728..688263	+	511	55377637	htlD	rrnAC0794	-	HTR-like protein
696	 61.68	0	688324..688884	+	186	55377638	-	rrnAC0795	-	hypothetical protein
697	 65.06	0	688888..689448	-	186	55377639	hat4	rrnAC0796	-	putative acetyltransferase
698	 63.27	0	689505..690947	-	480	55377640	purF	rrnAC0797	-	amidophosphoribosyl transferase
699	 53.55	-2	691132..691314	-	60	55377641	snp	rrnAC0798	-	snRNP-like protein
700	 64.98	0	691386..692453	-	355	55377642	cdlM	rrnAC0799	-	endoglucanase
701	 62.81	0	692559..692843	+	94	55377643	-	rrnAC0800	-	hypothetical protein
62.75	MEAN

4.09	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.