IslandPathversion 1.0

IslandPath Analysis: Haloarcula marismortui ATCC 43049



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 62.75 STD DEV: 4.09
Haloarcula marismortui ATCC 43049 chromosome I, complete sequence - 1..3131724
3131 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
565	 63.60	0	558725..559669	-	314	55377507	livH-3	rrnAC0646	-	branched-chain amino acid ABC transporter permease protein
566	 64.15	0	559679..561028	-	449	55377508	abcS-1	rrnAC0647	-	ABC transporter substrate-binding protein
567	 64.14	0	561275..562144	+	289	55377509	bdhA	rrnAC0648	-	D-beta-hydroxybutyrate dehydrogenase
568	 63.50	0	562289..564310	+	673	55377510	acs1	rrnAC0650	-	acyl-coenzyme A synthetase
569	 66.01	0	564311..565369	-	352	55377511	-	rrnAC0651	-	sugar transporter
570	 52.63	-2	565622..565735	-	37	55377512	-	rrnAC0652	-	hypothetical protein
571	 61.15	0	566204..567181	-	325	55377513	cysH	rrnAC0653	-	phospho-adenylyl-sulfate reductase
572	 60.36	0	567315..567932	+	205	55377514	-	rrnAC0654	-	hypothetical protein
573	 60.43	0	568014..568670	-	218	55377515	-	rrnAC0655	-	hypothetical protein
574	 60.96	0	568812..569144	-	110	55377516	ferA3	rrnAC0656	-	ferredoxin
575	 62.72	0	569330..570748	+	472	55377517	-	rrnAC0657	-	P-hydroxybenzoate hydroxylase
576	 55.19	-1	570989..571441	+	150	55377518	-	rrnAC0658	-	hypothetical protein
577	 64.31	0	571447..572718	-	423	55377519	ama	rrnAC0659	-	N-acyl-L-amino acid amidohydrolase
578	 57.31	-1	572774..573190	-	138	55377520	rps10p-2	rrnAC0660	-	ribosomal protein S10p
579	 61.11	0	573202..573633	+	143	55377521	apa	rrnAC0661	-	diadenosine tetraphosphate pyrophosphohydrolase
580	 61.29	0	573657..574028	-	123	55377522	-	rrnAC0662	-	hypothetical protein
581	 69.58	+1	575072..575311	+	79	55377523	-	rrnAC0663	-	hypothetical protein
582	 62.71	0	575335..575814	-	159	55377524	-	rrnAC0664	-	hypothetical protein
583	 64.97	0	575867..577102	-	411	55377525	abcP-2	rrnAC0665	-	ABC transporter permease protein
584	 67.87	+1	577102..577683	-	193	55377526	-	rrnAC0666	-	ABC transporter ATP-binding protein
585	 63.14	0	577925..578944	+	339	55377527	-	rrnAC0667	-	hypothetical protein
586	 64.73	0	578969..579433	-	154	55377528	-	rrnAC0668	-	hypothetical protein
587	 66.09	0	579426..581162	-	578	55377529	polX	rrnAC0669	-	DNA polymerase IV
588	 60.48	0	581845..583929	+	694	55377530	-	rrnAC0672	-	hypothetical protein
589	 49.24	-2	583993..584124	-	43	55377531	-	rrnAC0673	-	hypothetical protein
590	 58.84	0	584532..585476	+	314	55377532	htlD	rrnAC0674	-	HTR-like protein
591	 62.12	0	585695..586639	+	314	55377533	-	rrnAC0675	-	hypothetical protein
592	 64.83	0	586636..587451	+	271	55377534	nfi	rrnAC0676	-	endonuclease V
593	 63.64	0	587507..588331	+	274	55377535	yusZ4	rrnAC0677	-	short-chain dehydrogenase/oxidoreductase
594	 66.57	0	588349..589437	-	362	55377536	arsA2	rrnAC0678	-	arsenical pump-driving ATPase
595	 67.11	+1	589709..592162	-	817	55377537	rad3a	rrnAC0680	-	helicase
596	 60.43	0	592303..592863	-	186	55377538	tbpE	rrnAC0681	-	transcription factor
597	 60.77	0	593067..593507	-	146	55377539	-	rrnAC0682	-	hypothetical protein
598	 64.70	0	593578..594795	-	405	55377540	-	rrnAC0683	-	hypothetical protein
599	 63.82	0	594875..595330	+	151	55377541	mamA1	rrnAC0684	-	methylaspartate mutase subunit S
600	 65.78	0	595333..596796	+	487	55377542	mamB	rrnAC0685	-	methylaspartate mutase
601	 68.15	+1	596708..598054	+	448	55377543	mal	rrnAC0687	-	methylaspartate ammonia-lyase
602	 66.84	+1	597969..599123	+	384	55377544	-	rrnAC0688	-	hypothetical protein
603	 64.36	0	599120..600160	+	346	55377545	citE1	rrnAC0690	-	citrate lyase beta chain
604	 65.77	0	600176..601294	-	372	55377546	aspC4	rrnAC0691	-	aspartate aminotransferase
605	 61.11	0	601333..601476	-	47	55377547	-	rrnAC0692	-	hypothetical protein
606	 66.47	0	601555..602064	+	169	55377548	cinA	rrnAC0693	-	competence/damage-inducible protein CinA
607	 59.76	0	602101..602607	+	168	55377549	-	rrnAC0695	-	putative membrane-bound metal-dependent hydrolase
608	 60.44	0	602604..603503	-	299	55377550	-	rrnAC0696	-	hypothetical protein
609	 63.24	0	604112..604549	-	145	55377551	nusG	rrnAC0698	-	transcription antitermination protein NusG
610	 59.44	0	604554..604733	-	59	55377552	secE	rrnAC0700	-	preprotein translocase subunit SecE
611	 62.47	0	604883..607336	-	817	55377553	htr18	rrnAC0701	-	MCP domain-containing signal transducer
612	 62.71	0	607333..608571	-	412	55377554	-	rrnAC0702	-	leucine/isoleucine/valine-binding protein
613	 63.39	0	608700..609860	-	386	55377555	ftsZ1	rrnAC0703	-	cell division protein FtsZ
614	 64.68	0	609964..611319	-	451	55377556	-	rrnAC0704	-	hypothetical protein
615	 62.65	0	611319..612788	-	489	55377557	nce1	rrnAC0706	-	Na+/Ca2+-exchanging protein
616	 66.29	0	612814..613611	+	265	55377558	aroE	rrnAC0707	-	shikimate 5-dehydrogenase
617	 62.24	0	613662..614249	+	195	55377559	-	rrnAC0708	-	hypothetical protein
618	 66.94	+1	614320..615789	+	489	55377560	trpE1	rrnAC0709	-	anthranilate synthase component I
619	 64.63	0	615786..616520	+	244	55377561	trpD2	rrnAC0710	-	anthranilate synthase component II
620	 68.38	+1	616505..617377	+	290	55377562	ilvE2	rrnAC0711	-	branched-chain amino acid aminotransferase
621	 57.04	-1	617461..617886	+	141	55377563	-	rrnAC0713	-	oxidoreductase
622	 59.80	0	617924..618229	-	101	55377564	-	rrnAC0715	-	hypothetical protein
623	 63.09	0	618346..619212	+	288	55377565	usp6	rrnAC0716	-	universal stress protein
624	 65.81	0	619284..619982	-	232	55377566	-	rrnAC0717	-	FAD/NAD binding oxidoreductase
625	 63.15	0	620125..621885	+	586	55377567	porA	rrnAC0718	-	pyruvate ferredoxin oxidoreductase subunit alpha
626	 62.96	0	621882..622745	+	287	55377568	porB	rrnAC0719	-	2-oxoglutarate ferredoxin oxidoreductase subunit beta
627	 63.90	0	622995..623789	+	264	55377569	ubiE3	rrnAC0720	-	hypothetical protein
628	 63.23	0	623869..625263	+	464	55377570	phr1	rrnAC0721	-	photolyase/cryptochrome
629	 61.90	0	625293..625502	-	69	55377571	mop	rrnAC0722	-	molybdenum-pterin binding protein
630	 63.98	0	625588..626070	-	160	55377572	-	rrnAC0723	-	putative membrane-bound metal-dependent hydrolase
631	 64.12	0	626070..626618	-	182	55377573	-	rrnAC0724	-	hypothetical protein
632	 64.10	0	626687..627856	-	389	55377574	-	rrnAC0725	-	hypothetical protein
633	 61.89	0	627968..629203	+	411	55377575	-	rrnAC0726	-	hypothetical protein
634	 64.99	0	629258..629971	+	237	55377576	-	rrnAC0727	-	ATP-NAD kinase
635	 56.71	-1	630013..630474	+	153	55377577	-	rrnAC0728	-	hypothetical protein
636	 59.26	0	630930..631199	-	89	55377578	-	rrnAC0729	-	hypothetical protein
637	 61.00	0	631210..631509	-	99	55377579	-	rrnAC0730	-	hypothetical protein
638	 62.88	0	631621..632385	-	254	55377580	-	rrnAC0731	-	cytochrome b(C-terminal)/b6
639	 58.71	0	632390..633193	-	267	55377581	petB1	rrnAC0732	-	cytochrome b6
640	 58.82	0	633197..634063	-	288	55377582	-	rrnAC0733	-	Rieske (2Fe-2S) domain-containing protein
641	 58.57	-1	634065..634484	-	139	55377583	-	rrnAC0734	-	hypothetical protein
642	 65.75	0	634484..635140	-	218	55377584	hcp8	rrnAC0735	-	halocyanin precursor-like
643	 64.61	0	635205..636128	-	307	55377585	-	rrnAC0736	-	hypothetical protein
644	 61.28	0	636216..636698	+	160	55377586	-	rrnAC0737	-	hypothetical protein
645	 61.93	0	636786..637292	+	168	55377587	usp29	rrnAC0738	-	universal stress protein
646	 62.57	0	637309..637992	-	227	55377588	nthA	rrnAC0739	-	endonuclease III
647	 61.00	0	638329..638628	+	99	55377589	hat1	rrnAC0740	-	acetyltransferase
648	 61.48	0	638684..639223	+	179	55377590	hat2	rrnAC0741	-	acetyltransferase
649	 66.45	0	639224..639679	-	151	55377591	top2	rrnAC0742	-	topoisomerase DNA binding C4 zinc finger
650	 59.15	0	639877..640182	+	101	55377592	-	rrnAC0743	-	PRC-barrel domain-containing protein
651	 61.96	0	640179..641645	-	488	55377593	-	rrnAC0744	-	hypothetical protein
652	 60.32	0	642329..642769	-	146	55377594	yyaI	rrnAC0745	-	acetyltransferase
653	 65.52	0	643286..644770	-	494	55377595	guaB3	rrnAC0748	-	inosine-5'-monophosphate dehydrogenase
654	 69.93	+1	645184..646071	+	295	55377596	-	rrnAC0749	-	hypothetical protein
655	 58.77	0	646113..646340	+	75	55377597	-	rrnAC0750	-	hypothetical protein
656	 61.25	0	646930..647631	+	233	55377598	icfA1	rrnAC0751	-	carbonic anhydrase
657	 57.14	-1	647707..648000	-	97	55377599	-	rrnAC0752	-	hypothetical protein
658	 67.20	+1	647997..648932	-	311	55377600	aroK	rrnAC0753	-	shikimate kinase
659	 59.06	0	649263..649946	+	227	55377601	trkA1	rrnAC0754	-	Trk potassium uptake system protein
660	 62.83	0	649948..651642	+	564	55377602	trkH3	rrnAC0755	-	TRK potassium uptake system protein
661	 57.98	-1	651666..652022	-	118	55377603	-	rrnAC0756	-	hypothetical protein
662	 59.70	0	652096..653631	-	511	55377604	trkH2	rrnAC0757	-	potassium uptake protein TrkH
663	 61.62	0	653900..654355	+	151	55377605	usp17	rrnAC0758	-	universal stress protein
664	 61.63	0	654352..656616	+	754	55377606	cat	rrnAC0759	-	cationic amino acid transporter
62.75	MEAN

4.09	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.