IslandPath Analysis: Haloarcula marismortui ATCC 43049



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 62.75   STD DEV: 4.09
Haloarcula marismortui ATCC 43049 chromosome I, complete sequence - 1..3131724
3131 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
498	 63.90	0	505017..506138	+	373	55377440	livM-2	rrnAC0570	-	branched-chain amino acid ABC transporter permease protein
499	 60.67	0	506135..506284	+	49	55377441	-	rrnAC0571	-	hypothetical protein
500	 63.16	0	506281..507135	+	284	55377442	catD	rrnAC0572	-	3-oxoadipate enol-lactone hydrolase
501	 66.48	0	507128..508771	+	547	55377443	fadD1	rrnAC0573	-	long-chain fatty-acid-CoA ligase
502	 60.71	0	508802..510697	+	631	55377444	htlD	rrnAC0574	-	HTR-like protein
503	 63.23	0	510779..512029	-	416	55377445	dgoA4	rrnAC0575	-	mandelate racemase/muconate lactonizing family protein
504	 64.89	0	512137..513603	-	488	55377446	-	rrnAC0576	-	hypothetical protein
505	 60.93	0	513938..514216	+	92	55377447	-	rrnAC0578	-	putative DNA binding
506	 58.16	-1	514277..514558	+	93	55377448	-	rrnAC0579	-	hypothetical protein
507	 58.84	0	514712..515746	-	344	55377449	tnp	rrnAC0581	-	phage integrase/site-specific recombinase
508	 64.62	0	515739..516080	-	113	55377450	-	rrnAC0582	-	hypothetical protein
509	 54.59	-1	516167..516373	-	68	55377451	-	rrnAC0583	-	CopG family protein
510	 48.74	-2	516491..516808	+	105	55377452	phrH1	rrnAC0584	-	PhiH1 repressor-like
511	 59.90	0	518122..518313	-	63	55377453	-	rrnAC0585	-	hypothetical protein
512	 53.97	-2	518343..518594	-	83	55377454	-	rrnAC0586	-	hypothetical protein
513	 54.17	-2	518745..518960	-	71	55377455	-	rrnAC0588	-	hypothetical protein
514	 58.87	0	519012..519857	-	281	55377457	-	rrnAC0589	-	putative phage integrase
515	 42.06	-2	519848..520351	+	167	55377456	-	rrnAC0590	-	hypothetical protein
516	 39.76	-2	520435..521274	-	279	55377458	-	rrnAC0591	-	hypothetical protein
517	 42.94	-2	521276..521785	-	169	55377459	-	rrnAC0592	-	hypothetical protein
518	 68.25	+1	521807..521932	-	41	55377460	-	rrnAC0593	-	hypothetical protein
519	 62.04	0	522350..522565	-	71	55377461	-	rrnAC0594	-	hypothetical protein
520	 63.58	0	522562..523014	-	150	55377462	-	rrnAC0595	-	hypothetical protein
521	 62.62	0	523002..523544	-	180	55377463	-	rrnAC0596	-	hypothetical protein
522	 63.82	0	523541..524383	-	280	55377464	-	rrnAC0597	-	hypothetical protein
523	 64.68	0	524385..524888	-	167	55377465	-	rrnAC0598	-	hypothetical protein
524	 58.33	-1	525127..525222	-	31	55377466	-	rrnAC0599	-	hypothetical protein
525	 56.57	-1	525212..525409	-	65	55377467	-	rrnAC0600	-	hypothetical protein
526	 67.25	+1	525409..525921	-	170	55377468	-	rrnAC0601	-	hypothetical protein
527	 60.98	0	525921..526184	-	87	55377469	-	rrnAC0602	-	hypothetical protein
528	 65.56	0	526199..526924	-	241	55377470	-	rrnAC0603	-	hypothetical protein
529	 64.22	0	526930..527460	-	176	55377471	-	rrnAC0604	-	hypothetical protein
530	 59.57	0	527809..527949	-	46	55377472	-	rrnAC0605	-	hypothetical protein
531	 64.64	0	527946..528686	-	246	55377473	-	rrnAC0606	-	hypothetical protein
532	 65.85	0	528967..529212	-	81	55377474	-	rrnAC0607	-	hypothetical protein
533	 61.95	0	529209..529781	-	190	55377475	-	rrnAC0608	-	hypothetical protein
534	 66.84	+1	529786..530346	-	186	55377476	-	rrnAC0609	-	hypothetical protein
535	 65.53	0	530340..530954	-	204	55377477	-	rrnAC0610	-	hypothetical protein
536	 66.97	+1	530951..531928	-	325	55377478	-	rrnAC0612	-	hypothetical protein
537	 56.55	-1	532386..532553	-	55	55377479	-	rrnAC0613	-	hypothetical protein
538	 62.28	0	532546..533001	-	151	55377480	-	rrnAC0614	-	hypothetical protein
539	 66.67	0	533141..533695	-	184	55377481	-	rrnAC0615	-	hypothetical protein
540	 61.80	0	534032..535162	-	376	55377482	pecE	rrnAC0616	-	pectinesterase
541	 65.18	0	535189..536601	+	470	55377483	rad25	rrnAC0617	-	DNA repair protein Rad25
542	 64.49	0	537048..538010	+	320	55377484	-	rrnAC0619	-	hypothetical protein
543	 64.64	0	538224..539654	+	476	55377485	-	rrnAC0620	-	hypothetical protein
544	 62.75	0	539732..540955	-	407	55377486	-	rrnAC0622	-	hypothetical protein
545	 61.56	0	540949..541908	-	319	55377487	-	rrnAC0623	-	hypothetical protein
546	 51.52	-2	542097..542195	-	32	55377488	-	rrnAC0624	-	hypothetical protein
547	 57.58	-1	542706..543002	-	98	55377489	-	rrnAC0625	-	hypothetical protein
548	 60.81	0	543151..544959	+	602	55377490	msbA-1	rrnAC0626	-	ABC transporter ATP-binding protein
549	 63.47	0	544992..545492	-	166	55377491	-	rrnAC0627	-	hypothetical protein
550	 64.16	0	545489..546445	-	318	55377492	sun	rrnAC0628	-	tRNA and rRNA cytosine-C5-methylase
551	 63.31	0	546452..547225	+	257	55377493	-	rrnAC0629	-	hypothetical protein
552	 64.96	0	547225..548220	+	331	55377494	sppA	rrnAC0630	-	putative signal peptide peptidase SppA
553	 65.58	0	548742..549383	+	213	55377495	-	rrnAC0631	-	hypothetical protein
554	 64.86	0	549419..550138	+	239	55377496	-	rrnAC0632	-	hypothetical protein
555	 59.03	0	550167..551174	-	335	55377497	rffH2	rrnAC0633	-	glucose-1-phosphate thymidylyltransferase
556	 62.04	0	551220..551867	+	215	55377498	nudB	rrnAC0634	-	NTP pyrophosphohydrolase
557	 63.08	0	551887..552276	-	129	55377499	gloA2	rrnAC0635	-	lactoylglutathione lyase and related lyase
558	 63.70	0	552359..554041	-	560	55377501	mcmA1	rrnAC0637	-	methylmalonyl-CoA mutase subunit alpha
559	 58.42	-1	554040..554645	+	201	55377500	ppiB2	rrnAC0638	-	peptidylprolyl isomerase
560	 63.93	0	554668..555252	-	194	55377502	-	rrnAC0639	-	acetyltransferase
561	 60.85	0	555360..556064	+	234	55377503	-	rrnAC0640	-	transcription regulator
562	 63.28	0	556090..556827	-	245	55377504	livF-3	rrnAC0641	-	branched-chain amino acid ABC transporter ATP-binding protein
563	 62.70	0	556820..557575	-	251	55377505	livG-3	rrnAC0642	-	branched-chain amino acid ABC transporter ATP-binding protein
564	 66.84	+1	557577..558725	-	382	55377506	livM-3	rrnAC0645	-	branched-chain amino acid ABC transporter permease protein
565	 63.60	0	558725..559669	-	314	55377507	livH-3	rrnAC0646	-	branched-chain amino acid ABC transporter permease protein
566	 64.15	0	559679..561028	-	449	55377508	abcS-1	rrnAC0647	-	ABC transporter substrate-binding protein
567	 64.14	0	561275..562144	+	289	55377509	bdhA	rrnAC0648	-	D-beta-hydroxybutyrate dehydrogenase
568	 63.50	0	562289..564310	+	673	55377510	acs1	rrnAC0650	-	acyl-coenzyme A synthetase
569	 66.01	0	564311..565369	-	352	55377511	-	rrnAC0651	-	sugar transporter
570	 52.63	-2	565622..565735	-	37	55377512	-	rrnAC0652	-	hypothetical protein
571	 61.15	0	566204..567181	-	325	55377513	cysH	rrnAC0653	-	phospho-adenylyl-sulfate reductase
572	 60.36	0	567315..567932	+	205	55377514	-	rrnAC0654	-	hypothetical protein
573	 60.43	0	568014..568670	-	218	55377515	-	rrnAC0655	-	hypothetical protein
574	 60.96	0	568812..569144	-	110	55377516	ferA3	rrnAC0656	-	ferredoxin
575	 62.72	0	569330..570748	+	472	55377517	-	rrnAC0657	-	P-hydroxybenzoate hydroxylase
576	 55.19	-1	570989..571441	+	150	55377518	-	rrnAC0658	-	hypothetical protein
577	 64.31	0	571447..572718	-	423	55377519	ama	rrnAC0659	-	N-acyl-L-amino acid amidohydrolase
578	 57.31	-1	572774..573190	-	138	55377520	rps10p-2	rrnAC0660	-	ribosomal protein S10p
579	 61.11	0	573202..573633	+	143	55377521	apa	rrnAC0661	-	diadenosine tetraphosphate pyrophosphohydrolase
580	 61.29	0	573657..574028	-	123	55377522	-	rrnAC0662	-	hypothetical protein
581	 69.58	+1	575072..575311	+	79	55377523	-	rrnAC0663	-	hypothetical protein
582	 62.71	0	575335..575814	-	159	55377524	-	rrnAC0664	-	hypothetical protein
583	 64.97	0	575867..577102	-	411	55377525	abcP-2	rrnAC0665	-	ABC transporter permease protein
584	 67.87	+1	577102..577683	-	193	55377526	-	rrnAC0666	-	ABC transporter ATP-binding protein
585	 63.14	0	577925..578944	+	339	55377527	-	rrnAC0667	-	hypothetical protein
586	 64.73	0	578969..579433	-	154	55377528	-	rrnAC0668	-	hypothetical protein
587	 66.09	0	579426..581162	-	578	55377529	polX	rrnAC0669	-	DNA polymerase IV
588	 60.48	0	581845..583929	+	694	55377530	-	rrnAC0672	-	hypothetical protein
589	 49.24	-2	583993..584124	-	43	55377531	-	rrnAC0673	-	hypothetical protein
590	 58.84	0	584532..585476	+	314	55377532	htlD	rrnAC0674	-	HTR-like protein
591	 62.12	0	585695..586639	+	314	55377533	-	rrnAC0675	-	hypothetical protein
592	 64.83	0	586636..587451	+	271	55377534	nfi	rrnAC0676	-	endonuclease V
593	 63.64	0	587507..588331	+	274	55377535	yusZ4	rrnAC0677	-	short-chain dehydrogenase/oxidoreductase
594	 66.57	0	588349..589437	-	362	55377536	arsA2	rrnAC0678	-	arsenical pump-driving ATPase
595	 67.11	+1	589709..592162	-	817	55377537	rad3a	rrnAC0680	-	helicase
596	 60.43	0	592303..592863	-	186	55377538	tbpE	rrnAC0681	-	transcription factor
597	 60.77	0	593067..593507	-	146	55377539	-	rrnAC0682	-	hypothetical protein
62.75	MEAN

4.09	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.