IslandPath Analysis: Haloarcula marismortui ATCC 43049



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 62.75   STD DEV: 4.09
Haloarcula marismortui ATCC 43049 chromosome I, complete sequence - 1..3131724
3131 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
440	 67.24	+1	442282..444903	+	873	55377382	copA4	rrnAC0504	-	copper-transporting ATPase CopA
441	 63.37	0	445220..446704	+	494	55377383	-	rrnAC0505	-	hypothetical protein
442	 62.60	0	446740..448314	-	524	55377384	phr2	rrnAC0506	-	cryptochrome/photolyase
443	 63.00	0	448437..449009	+	190	55377385	hcp2	rrnAC0508	-	halocyanin precursor-like protein
444	 58.75	0	449031..449333	-	100	55377386	-	rrnAC0509	-	hypothetical protein
445	 61.07	0	449936..450829	+	297	55377387	hcp9	rrnAC0510	-	halocyanin precursor-like
446	 63.44	0	450854..451627	-	257	55377388	hpcEa	rrnAC0511	-	2-hydroxyhepta-24-diene-1,7-dioate isomerase
447	 66.26	0	451791..452525	+	244	55377389	tyrA	rrnAC0512	-	prephenate dehydrogenase
448	 66.53	0	452522..453997	+	491	55377390	-	rrnAC0513	-	hypothetical protein
449	 68.52	+1	454034..454843	+	269	55377391	surE	rrnAC0514	-	acid phosphatase SurE
450	 62.77	0	454851..455774	+	307	55377392	-	rrnAC0516	-	hypothetical protein
451	 66.03	0	455777..457036	-	419	55377393	alaS2	rrnAC0517	-	alanyl-tRNA synthetase
452	 65.12	0	457258..457386	+	42	55377394	-	rrnAC0518	-	hypothetical protein
453	 60.71	0	457504..457671	+	55	55377395	-	rrnAC0519	-	hypothetical protein
454	 60.95	0	458004..458423	-	139	55377396	-	rrnAC0520	-	hypothetical protein
455	 57.93	-1	458465..459277	-	270	55377397	-	rrnAC0521	-	hypothetical protein
456	 58.76	0	459325..459792	-	155	55377398	bcp-1	rrnAC0522	-	peroxiredoxin
457	 59.76	0	459852..460097	-	81	55377399	-	rrnAC0523	-	hypothetical protein
458	 60.81	0	460608..460880	+	90	55377400	-	rrnAC0524	-	putative sec-independent transolcation prot
459	 66.79	0	461613..463244	+	543	55377401	-	rrnAC0525	-	glucose-methanol-choline family oxidoreductase
460	 63.04	0	463241..463819	-	192	55377402	-	rrnAC0526	-	putative membrane-bound metal-dependent hydrolase
461	 63.36	0	463904..464356	-	150	55377403	-	rrnAC0527	-	hypothetical protein
462	 60.66	0	464405..465103	-	232	55377404	cheC1	rrnAC0528	-	chemotaxis protein CheC
463	 66.11	0	465360..466442	+	360	55377405	hisC2	rrnAC0529	-	histidinol-phosphate aminotransferase
464	 62.02	0	466817..466945	+	42	55377406	-	rrnAC0531	-	hypothetical protein
465	 68.97	+1	466942..467550	+	202	55377407	pgsA	rrnAC0532	-	CDP-diacylglycerol-glycerol-3-phosphate 3-phosphatidyltransferase
466	 53.46	-2	467714..468841	+	375	55377408	tnp	rrnAC0534	-	transposase
467	 60.98	0	469022..469549	+	175	55377409	-	rrnAC0535	-	HTH DNA-binding protein
468	 56.60	-1	469551..470156	-	201	55377410	hlx4	rrnAC0536	-	HoxA-like transcriptional regulator
469	 68.06	+1	470253..470900	+	215	55377411	tpiA	rrnAC0537	-	triosephosphate isomerase
470	 63.11	0	470928..472865	-	645	55377412	-	rrnAC0538	-	hypothetical protein
471	 62.64	0	473013..473360	+	115	55377413	-	rrnAC0539	-	hypothetical protein
472	 65.05	0	473367..474728	-	453	55377414	dinB	rrnAC0540	-	DNA polymerase IV
473	 60.28	0	474865..475428	+	187	55377415	-	rrnAC0541	-	hypothetical protein
474	 70.43	+1	475840..476529	-	229	55377416	-	rrnAC0542	-	methyltransferase
475	 65.13	0	476542..477582	-	346	55377417	tyrS	rrnAC0543	-	tyrosyl-tRNA synthetase
476	 47.64	-2	477698..478333	+	211	55377418	tnp	rrnAC0544	-	transposase
477	 62.29	0	478474..479433	+	319	55377419	pfk1	rrnAC0545	-	phosphofructokinase
478	 63.45	0	479492..481324	+	610	55377420	pykA	rrnAC0546	-	pyruvate kinase
479	 61.11	0	481377..482348	+	323	55377421	glcK	rrnAC0547	-	glucokinase
480	 62.07	0	482379..483554	-	391	55377422	cdc6j	rrnAC0548	-	cell division control protein 6 homolog 6
481	 61.98	0	483617..484705	-	362	55377423	-	rrnAC0549	-	hypothetical protein
482	 62.43	0	484709..486241	-	510	55377424	glpK	rrnAC0550	-	glycerol kinase
483	 61.54	0	486370..488922	-	850	55377425	htr	rrnAC0552	-	MCP domain-containing signal transducer
484	 64.12	0	489273..491003	+	576	55377426	gpdA	rrnAC0554	-	glycerol-3-phosphate dehydrogenase
485	 66.98	+1	490993..492267	+	424	55377427	gpdB	rrnAC0555	-	anaerobic glycerol-3-phosphate dehydrogenase subunit B
486	 63.11	0	492264..493640	+	458	55377428	glpC	rrnAC0556	-	sn-glycerol-3-phosphate dehydrogenase subunit C
487	 60.86	0	493684..494148	-	154	55377429	-	rrnAC0557	-	hypothetical protein
488	 58.20	-1	494219..494773	-	184	55377430	-	rrnAC0558	-	HAMP domain-containing protein
489	 57.80	-1	494845..495543	-	232	55377431	xop2	rrnAC0559	-	opsin of unknown function
490	 63.80	0	495693..496145	-	150	55377432	usp14	rrnAC0561	-	universal stress protein
491	 63.33	0	496243..498939	-	898	55377433	pepC	rrnAC0562	-	phosphoenolpyruvate carboxylase
492	 62.70	0	499093..499797	+	234	55377434	-	rrnAC0564	-	hypothetical protein
493	 49.85	-2	500214..500546	+	110	55377435	-	rrnAC0565	-	hypothetical protein
494	 64.83	0	500927..502339	+	470	55377436	livK-1	rrnAC0566	-	branched chain amino acid ABC transporter branched chain amino acid-binding protein
495	 65.07	0	502342..503154	+	270	55377437	livG-2	rrnAC0567	-	branched-chain amino acid ABC transporter ATP-binding protein
496	 65.98	0	503415..503849	+	144	55377438	livF-2	rrnAC0568	-	branched-chain amino acid ABC transporter ATP-binding protein
497	 65.15	0	503846..504835	+	329	55377439	livH-2	rrnAC0569	-	branched-chain amino acid ABC transporter permease protein
498	 63.90	0	505017..506138	+	373	55377440	livM-2	rrnAC0570	-	branched-chain amino acid ABC transporter permease protein
499	 60.67	0	506135..506284	+	49	55377441	-	rrnAC0571	-	hypothetical protein
500	 63.16	0	506281..507135	+	284	55377442	catD	rrnAC0572	-	3-oxoadipate enol-lactone hydrolase
501	 66.48	0	507128..508771	+	547	55377443	fadD1	rrnAC0573	-	long-chain fatty-acid-CoA ligase
502	 60.71	0	508802..510697	+	631	55377444	htlD	rrnAC0574	-	HTR-like protein
503	 63.23	0	510779..512029	-	416	55377445	dgoA4	rrnAC0575	-	mandelate racemase/muconate lactonizing family protein
504	 64.89	0	512137..513603	-	488	55377446	-	rrnAC0576	-	hypothetical protein
505	 60.93	0	513938..514216	+	92	55377447	-	rrnAC0578	-	putative DNA binding
506	 58.16	-1	514277..514558	+	93	55377448	-	rrnAC0579	-	hypothetical protein
507	 58.84	0	514712..515746	-	344	55377449	tnp	rrnAC0581	-	phage integrase/site-specific recombinase
508	 64.62	0	515739..516080	-	113	55377450	-	rrnAC0582	-	hypothetical protein
509	 54.59	-1	516167..516373	-	68	55377451	-	rrnAC0583	-	CopG family protein
510	 48.74	-2	516491..516808	+	105	55377452	phrH1	rrnAC0584	-	PhiH1 repressor-like
511	 59.90	0	518122..518313	-	63	55377453	-	rrnAC0585	-	hypothetical protein
512	 53.97	-2	518343..518594	-	83	55377454	-	rrnAC0586	-	hypothetical protein
513	 54.17	-2	518745..518960	-	71	55377455	-	rrnAC0588	-	hypothetical protein
514	 58.87	0	519012..519857	-	281	55377457	-	rrnAC0589	-	putative phage integrase
515	 42.06	-2	519848..520351	+	167	55377456	-	rrnAC0590	-	hypothetical protein
516	 39.76	-2	520435..521274	-	279	55377458	-	rrnAC0591	-	hypothetical protein
517	 42.94	-2	521276..521785	-	169	55377459	-	rrnAC0592	-	hypothetical protein
518	 68.25	+1	521807..521932	-	41	55377460	-	rrnAC0593	-	hypothetical protein
519	 62.04	0	522350..522565	-	71	55377461	-	rrnAC0594	-	hypothetical protein
520	 63.58	0	522562..523014	-	150	55377462	-	rrnAC0595	-	hypothetical protein
521	 62.62	0	523002..523544	-	180	55377463	-	rrnAC0596	-	hypothetical protein
522	 63.82	0	523541..524383	-	280	55377464	-	rrnAC0597	-	hypothetical protein
523	 64.68	0	524385..524888	-	167	55377465	-	rrnAC0598	-	hypothetical protein
524	 58.33	-1	525127..525222	-	31	55377466	-	rrnAC0599	-	hypothetical protein
525	 56.57	-1	525212..525409	-	65	55377467	-	rrnAC0600	-	hypothetical protein
526	 67.25	+1	525409..525921	-	170	55377468	-	rrnAC0601	-	hypothetical protein
527	 60.98	0	525921..526184	-	87	55377469	-	rrnAC0602	-	hypothetical protein
528	 65.56	0	526199..526924	-	241	55377470	-	rrnAC0603	-	hypothetical protein
529	 64.22	0	526930..527460	-	176	55377471	-	rrnAC0604	-	hypothetical protein
530	 59.57	0	527809..527949	-	46	55377472	-	rrnAC0605	-	hypothetical protein
531	 64.64	0	527946..528686	-	246	55377473	-	rrnAC0606	-	hypothetical protein
532	 65.85	0	528967..529212	-	81	55377474	-	rrnAC0607	-	hypothetical protein
533	 61.95	0	529209..529781	-	190	55377475	-	rrnAC0608	-	hypothetical protein
534	 66.84	+1	529786..530346	-	186	55377476	-	rrnAC0609	-	hypothetical protein
535	 65.53	0	530340..530954	-	204	55377477	-	rrnAC0610	-	hypothetical protein
536	 66.97	+1	530951..531928	-	325	55377478	-	rrnAC0612	-	hypothetical protein
537	 56.55	-1	532386..532553	-	55	55377479	-	rrnAC0613	-	hypothetical protein
538	 62.28	0	532546..533001	-	151	55377480	-	rrnAC0614	-	hypothetical protein
539	 66.67	0	533141..533695	-	184	55377481	-	rrnAC0615	-	hypothetical protein
62.75	MEAN

4.09	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.