IslandPath Analysis: Haloarcula marismortui ATCC 43049



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 62.75   STD DEV: 4.09
Haloarcula marismortui ATCC 43049 chromosome I, complete sequence - 1..3131724
3131 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3028	 64.49	0	3035670..3037184	+	504	55379970	-	rrnAC3435	-	hypothetical protein
3029	 63.13	0	3037181..3038395	-	404	55379971	pch2	rrnAC3436	-	potassium channel-like
3030	 67.21	+1	3038419..3039699	+	426	55379972	-	rrnAC3437	-	hypothetical protein
3031	 66.45	0	3039696..3041516	+	606	55379973	-	rrnAC3438	-	hypothetical protein
3032	 67.03	+1	3041639..3041917	+	92	55379974	-	rrnAC3439	-	hypothetical protein
3033	 62.68	0	3041936..3043591	-	551	55379975	-	rrnAC3440	-	hypothetical protein
3034	 65.32	0	3043643..3044536	-	297	55379976	hat5	rrnAC3441	-	GNAT family acetyltransferase
3035	 64.18	0	3044630..3045877	-	415	55379977	asbA	rrnAC3442	-	glutamyl-tRNA(Gln) amidotransferase subunit D
3036	 64.33	0	3046073..3046672	+	199	55379978	-	rrnAC3443	-	hypothetical protein
3037	 66.67	0	3046746..3047255	+	169	55379979	-	rrnAC3445	-	hypothetical protein
3038	 60.79	0	3047605..3049170	+	521	55379980	-	rrnAC3446	-	hypothetical protein
3039	 60.96	0	3049204..3049851	-	215	55379981	arsR	rrnAC3447	-	transcription regulator
3040	 63.10	0	3049921..3051153	-	410	55379982	-	rrnAC3448	-	hypothetical protein
3041	 61.40	0	3051250..3051894	-	214	55379983	-	rrnAC3449	-	hypothetical protein
3042	 60.90	0	3052011..3052409	+	132	55379984	-	rrnAC3450	-	hypothetical protein
3043	 57.36	-1	3052925..3053590	+	221	55379985	-	rrnAC3451	-	putative DNA binding protein
3044	 66.98	+1	3053605..3054555	+	316	55379986	-	rrnAC3452	-	hypothetical protein
3045	 67.26	+1	3054631..3055641	+	336	55379987	-	rrnAC3454	-	hypothetical protein
3046	 68.11	+1	3055638..3056675	+	345	55379988	ykfB3	rrnAC3455	-	chloromuconate cycloisomerase
3047	 65.40	0	3056720..3057193	-	157	55379989	bcp1	rrnAC3456	-	bacterioferritin comigrating protein
3048	 64.04	0	3057279..3059222	-	647	55379990	-	rrnAC3457	-	hypothetical protein
3049	 66.47	0	3059279..3059791	-	170	55379991	-	rrnAC3458	-	anhydrase family 3 protein
3050	 62.27	0	3059903..3060334	-	143	55379992	usp26	rrnAC3460	-	universal stress protein
3051	 59.79	0	3060516..3061082	+	188	55379993	-	rrnAC3461	-	hypothetical protein
3052	 61.81	0	3061051..3063069	+	672	55379994	thrS	rrnAC3462	-	threonyl-tRNA synthetase
3053	 61.48	0	3063164..3064204	+	346	55379995	-	rrnAC3463	-	hypothetical protein
3054	 66.45	0	3064248..3065156	+	302	55379996	-	rrnAC3464	-	hypothetical protein
3055	 67.99	+1	3065229..3067190	+	653	55379997	arsB	rrnAC3466	-	arsenite transport protein
3056	 60.02	0	3067210..3068052	-	280	55379998	pspA1	rrnAC3467	-	transcription regulator
3057	 69.87	+1	3068113..3068706	+	197	55379999	-	rrnAC3468	-	hypothetical protein
3058	 66.09	0	3068841..3069014	+	57	55380000	-	rrnAC3469	-	hypothetical protein
3059	 63.54	0	3069081..3069272	+	63	55380001	-	rrnAC3470	-	hypothetical protein
3060	 61.37	0	3069350..3071011	+	553	55380002	pyrG	rrnAC3471	-	CTP synthetase
3061	 64.49	0	3071011..3071928	+	305	55380003	guaA1	rrnAC3472	-	GMP synthase subunit B
3062	 64.74	0	3071925..3072236	+	103	55380004	-	rrnAC3473	-	hypothetical protein
3063	 64.74	0	3072260..3072934	-	224	55380005	-	rrnAC3474	-	metallo-beta-lactamase superfamily protein
3064	 65.15	0	3073004..3073597	-	197	55380006	-	rrnAC3475	-	hypothetical protein
3065	 64.00	0	3074347..3075171	-	274	55380007	yafB-5	rrnAC3476	-	aldo/keto reductase family oxidoreductase
3066	 62.55	0	3075428..3075937	+	169	55380008	-	rrnAC3477	-	hypothetical protein
3067	 67.08	+1	3076047..3077012	-	321	55380009	-	rrnAC3479	-	hypothetical protein
3068	 64.70	0	3077219..3078184	-	321	55380010	moaB2	rrnAC3480	-	molybdenum cofactor biosynthesis protein B
3069	 63.86	0	3078588..3078908	+	106	55380011	-	rrnAC3481	-	hypothetical protein
3070	 62.47	0	3078951..3080690	+	579	55380012	ark-6	rrnAC3482	-	putative signal-transducing histidine kinase
3071	 65.95	0	3080700..3081398	-	232	55380013	fabG2	rrnAC3483	-	3-oxoacyl-[acyl-carrier protein] reductase
3072	 63.48	0	3081524..3082087	-	187	55380014	idi	rrnAC3484	-	isopentenyl-diphosphate delta-isomerase
3073	 61.43	0	3082135..3082821	-	228	55380016	-	rrnAC3486	-	hypothetical protein
3074	 57.71	-1	3082820..3083377	+	185	55380015	-	rrnAC3487	-	hypothetical protein
3075	 63.73	0	3083490..3083795	+	101	55380017	-	rrnAC3488	-	hypothetical protein
3076	 67.50	+1	3083796..3084869	+	357	55380018	pqqE	rrnAC3489	-	coenzyme PQQ synthesis protein
3077	 64.20	0	3084935..3085582	+	215	55380019	boa2	rrnAC3490	-	bacterio-opsin activator-like protein
3078	 59.11	0	3085604..3085894	+	96	55380020	-	rrnAC3491	-	hypothetical protein
3079	 62.96	0	3085997..3086293	-	98	55380021	-	rrnAC3493	-	hypothetical protein
3080	 57.35	-1	3086346..3086624	-	92	55380022	-	rrnAC3494	-	ArsR family regulatory protein
3081	 66.93	+1	3086827..3087948	-	373	55380023	aspB2	rrnAC3495	-	aspartate aminotransferase
3082	 65.72	0	3088061..3089224	-	387	55380024	yqeF	rrnAC3497	-	acetyl-CoA acetyltransferase
3083	 57.69	-1	3089280..3089435	-	51	55380025	-	rrnAC3499	-	hypothetical protein
3084	 68.10	+1	3089482..3090249	-	255	55380026	-	rrnAC3501	-	transcription regulator
3085	 66.12	0	3090331..3091068	+	245	55380027	-	rrnAC3502	-	hypothetical protein
3086	 55.77	-1	3091106..3091261	+	51	55380028	-	rrnAC3503	-	hypothetical protein
3087	 67.38	+1	3091300..3092553	-	417	55380029	-	rrnAC3504	-	flavin-containing amine-oxidoreductase
3088	 69.91	+1	3092637..3093809	+	390	55380030	thrC1	rrnAC3505	-	threonine synthase
3089	 65.29	0	3093916..3094929	+	337	55380031	adh2	rrnAC3506	-	alcohol dehydrogenase
3090	 61.19	0	3094978..3095397	-	139	55380032	usp3	rrnAC3507	-	universal stress protein 3
3091	 59.93	0	3095636..3096526	+	296	55380033	usp7	rrnAC3508	-	universal stress protein
3092	 64.97	0	3096545..3097015	-	156	55380034	dnaJ1	rrnAC3509	-	chaperone
3093	 63.50	0	3097311..3098069	-	252	55380035	-	rrnAC3510	-	hypothetical protein
3094	 61.75	0	3098075..3098257	-	60	55380036	nop10P	rrnAC3511	-	H/ACA RNA-protein complex component Nop10p
3095	 61.92	0	3098288..3099088	-	266	55380037	eif2A	rrnAC3512	-	translation initiation factor IF-2 subunit alpha
3096	 63.22	0	3099090..3099263	-	57	55380038	rps27e	rrnAC3513	-	30S ribosomal protein S27e
3097	 62.37	0	3099266..3099544	-	92	55380039	rpl44e	rrnAC3514	-	50S ribosomal protein L44e
3098	 60.23	0	3099684..3099947	-	87	55380040	-	rrnAC3515	-	hypothetical protein
3099	 63.37	0	3100133..3100405	+	90	55380041	-	rrnAC3516	-	hypothetical protein
3100	 66.58	0	3100463..3102781	-	772	55380042	-	rrnAC3517	-	hypothetical protein
3101	 63.80	0	3102899..3103666	+	255	55380043	dgs	rrnAC3518	-	dolichol-P-glucose transferase
3102	 61.73	0	3103663..3104148	+	161	55380044	-	rrnAC3519	-	GtrA-like family protein
3103	 62.59	0	3104569..3104838	-	89	55380045	-	rrnAC3522	-	hypothetical protein
3104	 58.95	0	3105139..3105708	-	189	55380046	apt1	rrnAC3523	-	adenine phosphoribosyltransferase
3105	 63.32	0	3105753..3107666	-	637	55380047	-	rrnAC3524	-	hypothetical protein
3106	 59.10	0	3107663..3108151	-	162	55380048	-	rrnAC3525	-	hypothetical protein
3107	 50.11	-2	3108242..3108712	-	156	55380049	-	rrnAC3526	-	hypothetical protein
3108	 58.72	0	3108977..3109555	-	192	55380050	-	rrnAC3527	-	hypothetical protein
3109	 52.62	-2	3109668..3110144	-	158	55380051	-	rrnAC3528	-	hypothetical protein
3110	 63.08	0	3110321..3112102	-	593	55380052	-	rrnAC3529	-	putative monovalent cation/H+ antiporter subunit D
3111	 65.14	0	3112102..3113799	-	565	55380053	nuoL1	rrnAC3530	-	putative monovalent cation/H+ antiporter subunit D
3112	 66.53	0	3113796..3115289	-	497	55380054	ndhG2	rrnAC3531	-	putative monovalent cation/H+ antiporter subunit D
3113	 56.30	-1	3115282..3115638	-	118	55380055	-	rrnAC3532	-	putative monovalent cation/H+ antiporter subunit C
3114	 62.66	0	3115638..3116111	-	157	55380056	mnhG1	rrnAC3533	-	putative monovalent cation/H+ antiporter subunit B
3115	 63.00	0	3116108..3116653	-	181	55380057	-	rrnAC3534	-	putative monovalent cation/H+ antiporter subunit B
3116	 62.93	0	3116650..3116970	-	106	55380058	mnhG2	rrnAC3535	-	putative monovalent cation/H+ antiporter subunit G
3117	 60.14	0	3116967..3117242	-	91	161723230	-	rrnAC3536	-	putative monovalent cation/H+ antiporter subunit F
3118	 62.99	0	3117235..3118323	-	362	161723229	mnhE	rrnAC3537	-	putative monovalent cation/H+ antiporter subunit E
3119	 66.58	0	3118428..3119594	-	388	55380061	dfp	rrnAC3539	-	pantothenate metabolism flavoprotein
3120	 66.54	0	3119645..3121210	-	521	55380062	-	rrnAC3540	-	hypothetical protein
3121	 66.26	0	3121207..3122436	-	409	55380063	-	rrnAC3541	-	hypothetical protein
3122	 63.98	0	3122529..3123272	-	247	55380064	-	rrnAC3542	-	hypothetical protein
3123	 67.32	+1	3123272..3123733	-	153	55380065	-	rrnAC3543	-	hypothetical protein
3124	 67.14	+1	3124480..3125541	+	353	55380066	htpX4	rrnAC3544	-	protease heat shock protein HtpX
3125	 64.60	0	3125533..3126306	-	257	55380067	trxB4	rrnAC3545	-	thioredoxin reductase
3126	 60.82	0	3126429..3127643	+	404	55380068	pan2	rrnAC3546	-	proteasome-activating nucleotidase
3127	 62.37	0	3127771..3128352	+	193	55380069	-	rrnAC3548	-	hypothetical protein
62.75	MEAN

4.09	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.