IslandPathversion 1.0

IslandPath Analysis: Haloarcula marismortui ATCC 43049



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 62.75 STD DEV: 4.09
Haloarcula marismortui ATCC 43049 chromosome I, complete sequence - 1..3131724
3131 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2947	 63.39	0	2955724..2956302	-	192	55379889	cmk	rrnAC3343	-	cytidylate kinase
2948	 62.40	0	2956348..2957238	-	296	55379890	htlB	rrnAC3344	-	HTR-like protein
2949	 62.98	0	2957326..2957976	-	216	55379891	adk	rrnAC3346	-	adenylate kinase
2950	 64.03	0	2958004..2958534	+	176	55379892	bcp2	rrnAC3345	-	bacterioferritin comigratory protein
2951	 60.57	0	2958606..2959655	-	349	55379893	kinA3	rrnAC3347	-	signal-transducing histidine kinase-like
2952	 62.68	0	2959917..2963231	+	1104	55379894	kinA5	rrnAC3349	-	signal-transducing histidine kinase-like
2953	 66.67	0	2960004..2960966	-	320	55379895	thrB	rrnAC3348	-	homoserine kinase
2954	 63.66	0	2963243..2964604	+	453	55379896	-	rrnAC3351	-	hypothetical protein
2955	 62.22	0	2964710..2965474	-	254	55379898	-	rrnAC3352	-	hypothetical protein
2956	 63.07	0	2965440..2966690	+	416	55379897	noxA2	rrnAC3353	-	NADH oxidase
2957	 70.22	+1	2966739..2966963	+	74	55379899	-	rrnAC3354	-	hypothetical protein
2958	 64.51	0	2967016..2967432	+	138	55379900	-	rrnAC3355	-	hypothetical protein
2959	 56.98	-1	2967507..2968280	+	257	55379901	-	rrnAC3356	-	hypothetical protein
2960	 61.42	0	2968335..2968868	+	177	55379902	-	rrnAC3357	-	hypothetical protein
2961	 64.96	0	2968918..2969679	+	253	55379903	-	rrnAC3358	-	hypothetical protein
2962	 61.47	0	2969767..2969997	+	76	55379904	-	rrnAC3359	-	hypothetical protein
2963	 63.59	0	2970154..2973405	+	1083	55379905	carB	rrnAC3360	-	carbamoyl phosphate synthase large subunit
2964	 61.11	0	2973516..2976536	+	1006	55379906	htlD	rrnAC3361	-	HTR-like protein
2965	 61.56	0	2976761..2977387	+	208	55379907	-	rrnAC3362	-	hypothetical protein
2966	 65.81	0	2977674..2978720	-	348	55379908	carA	rrnAC3363	-	carbamoyl phosphate synthase small subunit
2967	 60.39	0	2978823..2979236	+	137	55379909	trh3	rrnAC3365	-	transcription regulator
2968	 65.79	0	2979236..2979349	+	37	55379910	-	rrnAC3366	-	hypothetical protein
2969	 65.18	0	2979380..2980255	+	291	55379911	-	rrnAC3368	-	hypothetical protein
2970	 61.25	0	2980337..2981443	+	368	55379912	htlA	rrnAC3369	-	hypothetical protein
2971	 61.95	0	2981576..2982763	+	395	55379913	-	rrnAC3370	-	signal transducing histidine kinase
2972	 68.09	+1	2982789..2984759	-	656	55379914	yprA2	rrnAC3371	-	ATP-dependant helicase
2973	 70.44	+1	2985223..2986494	-	423	55379915	btuD	rrnAC3372	-	corrinoid ABC transporter ATPase
2974	 67.79	+1	2986491..2987561	-	356	55379917	btuC	rrnAC3374	-	corrinoid ABC transporter permease
2975	 64.58	0	2987560..2988708	+	382	55379916	btuF	rrnAC3375	-	corrinoid ABC transporter substrate-binding protein
2976	 67.08	+1	2988713..2989441	+	242	55379918	-	rrnAC3378	-	5-formyltetrahydrofolate cyclo-ligase
2977	 61.71	0	2989478..2991493	+	671	55379919	htlD	rrnAC3379	-	HTR-like protein
2978	 63.95	0	2991494..2992894	-	466	55379920	lpdA1	rrnAC3381	-	dihydrolipoamide dehydrogenase
2979	 62.85	0	2992992..2995508	-	838	55379921	-	rrnAC3382	-	hypothetical protein
2980	 61.53	0	2995512..2997458	-	648	55379922	-	rrnAC3383	-	hypothetical protein
2981	 55.56	-1	2997642..2998262	+	206	55379923	-	rrnAC3384	-	DNA binding protein putative transcriptional regulator
2982	 56.57	-1	2998259..2998654	-	131	55379924	ntrC	rrnAC3385	-	signal receiver domain-containing protein
2983	 52.36	-2	2998938..2999573	+	211	55379925	tnp	rrnAC3387	-	transposase
2984	 67.00	+1	2999630..3000238	+	202	55379926	-	rrnAC3388	-	hypothetical protein
2985	 59.72	0	3000315..3000602	+	95	55379927	-	rrnAC3390	-	hypothetical protein
2986	 66.20	0	3000599..3001450	-	283	55379928	ppnK	rrnAC3391	-	inorganic polyphosphate/ATP-NAD kinase
2987	 61.62	0	3001559..3002728	+	389	55379929	kaiC2	rrnAC3392	-	circadian regulator
2988	 61.76	0	3002725..3003438	-	237	55379930	-	rrnAC3393	-	hypothetical protein
2989	 60.57	0	3003515..3004039	+	174	55379931	usp4	rrnAC3394	-	universal stress protein
2990	 60.77	0	3004042..3004482	-	146	55379932	usp24	rrnAC3395	-	universal stress protein
2991	 64.07	0	3004543..3006393	-	616	55379933	-	rrnAC3396	-	hypothetical protein
2992	 65.23	0	3006439..3007272	+	277	55379934	-	rrnAC3397	-	hypothetical protein
2993	 68.75	+1	3007316..3007651	+	111	55379935	-	rrnAC3398	-	hypothetical protein
2994	 62.10	0	3007703..3008074	+	123	55379936	-	rrnAC3399	-	DNA binding protein putative transcriptional regulator
2995	 60.73	0	3008074..3008376	+	100	55379937	-	rrnAC3400	-	hypothetical protein
2996	 66.51	0	3008382..3009632	-	416	55379938	-	rrnAC3401	-	hypothetical protein
2997	 62.08	0	3009688..3010188	-	166	55379939	-	rrnAC3402	-	hypothetical protein
2998	 67.37	+1	3010252..3011811	+	519	55379940	pgm	rrnAC3403	-	phosphoglyceromutase
2999	 66.37	0	3011829..3012497	-	222	55379941	kptA	rrnAC3404	-	RNA 2'-phosphotransferase
3000	 64.76	0	3012684..3013418	+	244	55379942	-	rrnAC3405	-	acetyltransferase
3001	 59.35	0	3013510..3014001	+	163	55379943	-	rrnAC3406	-	hypothetical protein
3002	 67.15	+1	3014009..3014830	-	273	55379944	nadC1	rrnAC3408	-	nicotinate-nucleotide pyrophosphorylase
3003	 69.23	+1	3014830..3016389	-	519	55379945	nadB	rrnAC3409	-	L-aspartate oxidase
3004	 63.73	0	3016392..3017516	-	374	55379946	nadA	rrnAC3410	-	quinolinate synthetase
3005	 67.33	+1	3017786..3019282	-	498	55379947	-	rrnAC3411	-	metal dependent amidohydrolase superfamily protein
3006	 68.97	+1	3019364..3020581	+	405	55379948	mvaA	rrnAC3412	-	3-hydroxy-3-methylglutaryl-coenzyme A reductase
3007	 69.21	+1	3020603..3020956	-	117	55379949	-	rrnAC3413	-	hypothetical protein
3008	 68.00	+1	3020953..3021477	-	174	55379950	-	rrnAC3414	-	hypothetical protein
3009	 61.65	0	3021570..3021908	+	112	55379951	-	rrnAC3415	-	hypothetical protein
3010	 63.41	0	3021946..3022743	+	265	55379952	-	rrnAC3416	-	hypothetical protein
3011	 65.33	0	3022765..3022989	-	74	55379953	-	rrnAC3417	-	hypothetical protein
3012	 62.72	0	3023071..3023298	+	75	55379954	-	rrnAC3418	-	hypothetical protein
3013	 62.47	0	3023496..3024758	-	420	55379955	icd	rrnAC3419	-	isocitrate dehydrogenase
3014	 68.36	+1	3024867..3025751	+	294	55379956	ans	rrnAC3420	-	asparaginase family protein
3015	 64.66	0	3025794..3026690	+	298	55379957	map	rrnAC3421	-	methionine aminopeptidase
3016	 53.75	-2	3026907..3027146	-	79	55379958	-	rrnAC3422	-	hypothetical protein
3017	 60.71	0	3027348..3027884	+	178	55379959	hit1	rrnAC3423	-	histidine triad protein
3018	 61.71	0	3028018..3028905	+	295	55379960	-	rrnAC3424	-	Rieske (2Fe-2S) domain-containing protein
3019	 64.92	0	3028952..3029866	+	304	55379961	cef	rrnAC3425	-	cation efflux system protein (zinc/cadmium)
3020	 63.31	0	3029900..3030286	+	128	55379962	doxD2	rrnAC3427	-	terminal quinol oxidase subunit
3021	 63.63	0	3030324..3031607	-	427	55379963	-	rrnAC3428	-	hypothetical protein
3022	 64.94	0	3031658..3032353	-	231	55379964	deoC1	rrnAC3429	-	deoxyribose-phosphate aldolase
3023	 63.20	0	3032518..3033354	+	278	55379965	-	rrnAC3430	-	hypothetical protein
3024	 60.63	0	3033361..3033774	-	137	55379966	-	rrnAC3431	-	hypothetical protein
3025	 62.75	0	3034008..3034517	+	169	55379967	-	rrnAC3432	-	hypothetical protein
3026	 63.51	0	3034519..3034740	-	73	55379968	-	rrnAC3433	-	hypothetical protein
3027	 65.43	0	3034827..3035552	+	241	55379969	udp1	rrnAC3434	-	uridine phosphorylase
3028	 64.49	0	3035670..3037184	+	504	55379970	-	rrnAC3435	-	hypothetical protein
3029	 63.13	0	3037181..3038395	-	404	55379971	pch2	rrnAC3436	-	potassium channel-like
3030	 67.21	+1	3038419..3039699	+	426	55379972	-	rrnAC3437	-	hypothetical protein
3031	 66.45	0	3039696..3041516	+	606	55379973	-	rrnAC3438	-	hypothetical protein
3032	 67.03	+1	3041639..3041917	+	92	55379974	-	rrnAC3439	-	hypothetical protein
3033	 62.68	0	3041936..3043591	-	551	55379975	-	rrnAC3440	-	hypothetical protein
3034	 65.32	0	3043643..3044536	-	297	55379976	hat5	rrnAC3441	-	GNAT family acetyltransferase
3035	 64.18	0	3044630..3045877	-	415	55379977	asbA	rrnAC3442	-	glutamyl-tRNA(Gln) amidotransferase subunit D
3036	 64.33	0	3046073..3046672	+	199	55379978	-	rrnAC3443	-	hypothetical protein
3037	 66.67	0	3046746..3047255	+	169	55379979	-	rrnAC3445	-	hypothetical protein
3038	 60.79	0	3047605..3049170	+	521	55379980	-	rrnAC3446	-	hypothetical protein
3039	 60.96	0	3049204..3049851	-	215	55379981	arsR	rrnAC3447	-	transcription regulator
3040	 63.10	0	3049921..3051153	-	410	55379982	-	rrnAC3448	-	hypothetical protein
3041	 61.40	0	3051250..3051894	-	214	55379983	-	rrnAC3449	-	hypothetical protein
3042	 60.90	0	3052011..3052409	+	132	55379984	-	rrnAC3450	-	hypothetical protein
3043	 57.36	-1	3052925..3053590	+	221	55379985	-	rrnAC3451	-	putative DNA binding protein
3044	 66.98	+1	3053605..3054555	+	316	55379986	-	rrnAC3452	-	hypothetical protein
3045	 67.26	+1	3054631..3055641	+	336	55379987	-	rrnAC3454	-	hypothetical protein
3046	 68.11	+1	3055638..3056675	+	345	55379988	ykfB3	rrnAC3455	-	chloromuconate cycloisomerase
62.75	MEAN

4.09	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.