IslandPath Analysis: Haloarcula marismortui ATCC 43049



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 62.75   STD DEV: 4.09
Haloarcula marismortui ATCC 43049 chromosome I, complete sequence - 1..3131724
3131 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2890	 64.43	0	2904611..2905237	-	208	55379832	-	rrnAC3282	-	hypothetical protein
2891	 60.49	0	2905237..2906013	-	258	55379833	-	rrnAC3283	-	hypothetical protein
2892	 61.51	0	2905991..2907172	-	393	55379834	ftsZ5	rrnAC3284	-	cell division protein
2893	 60.00	0	2907310..2908209	-	299	55379835	nolA	rrnAC3285	-	NADH dehydrogenase/oxidoreductase-like protein
2894	 64.12	0	2908350..2908937	+	195	55379836	tdk	rrnAC3286	-	thymidylate kinase
2895	 57.32	-1	2908934..2909254	-	106	55379837	-	rrnAC3287	-	hypothetical protein
2896	 57.14	-1	2909307..2909537	-	76	55379838	-	rrnAC3288	-	hypothetical protein
2897	 62.15	0	2909678..2910364	+	228	55379839	trkA3	rrnAC3289	-	TRK potassium uptake system protein
2898	 55.84	-1	2910367..2910597	+	76	55379840	trh5	rrnAC3290	-	transcription regulator
2899	 63.94	0	2910637..2911149	-	170	55379841	-	rrnAC3291	-	hypothetical protein
2900	 62.86	0	2911600..2912124	-	174	55379842	-	rrnAC3292	-	hypothetical protein
2901	 61.03	0	2912162..2912569	-	135	55379843	-	rrnAC3294	-	hypothetical protein
2902	 62.41	0	2912562..2913971	-	469	55379844	ykfD	rrnAC3295	-	oligopeptide ABC transporter ATP-binding
2903	 62.49	0	2913892..2915112	-	406	55379845	oppD2	rrnAC3296	-	oligopeptide ABC transporter ATPase component
2904	 60.57	0	2915109..2916569	-	486	55379846	oppC	rrnAC3297	-	oligopeptide ABC transporter permease protein
2905	 57.64	-1	2916566..2917606	-	346	55379847	dppB	rrnAC3298	-	dipeptide ABC transporter permease
2906	 60.24	0	2917719..2919584	-	621	55379848	dppA	rrnAC3299	-	dipeptide ABC transporter dipeptide-binding
2907	 62.28	0	2919834..2920175	-	113	55379849	-	rrnAC3300	-	hypothetical protein
2908	 66.53	0	2920232..2920966	-	244	55379850	-	rrnAC3302	-	hypothetical protein
2909	 63.33	0	2921057..2921686	-	209	55379851	ppiB1	rrnAC3303	-	peptidyl-prolyl cis-trans isomerase
2910	 66.14	0	2921772..2922713	-	313	55379852	yfhM	rrnAC3304	-	epoxide hydrolase-related protein
2911	 64.83	0	2922762..2923847	-	361	55379853	trpD1	rrnAC3306	-	anthranilate phosphoribosyltransferase
2912	 60.79	0	2923957..2924994	+	345	55379854	nirD	rrnAC3307	-	heme biosynthesis protein
2913	 57.17	-1	2925068..2925667	+	199	55379855	hlx5	rrnAC3308	-	HoxA-like transcriptional regulator
2914	 62.47	0	2925755..2926684	+	309	55379856	-	rrnAC3309	-	GTP cyclohydrolase
2915	 60.64	0	2926822..2927634	-	270	55379857	-	rrnAC3310	-	transcription regulator
2916	 69.14	+1	2927705..2929318	-	537	55379858	-	rrnAC3311	-	hypothetical protein
2917	 65.87	0	2929400..2930776	+	458	55379859	cyp1	rrnAC3312	-	cytochrome P450
2918	 67.20	+1	2930850..2931407	+	185	55379860	fxsA	rrnAC3314	-	FxsA
2919	 58.97	0	2931813..2932670	+	285	55379861	-	rrnAC3315	-	hypothetical protein
2920	 61.07	0	2932816..2933244	-	142	55379862	arsC	rrnAC3316	-	putative arsenate reductase
2921	 59.62	0	2933691..2934542	+	283	55379863	-	rrnAC3317	-	hypothetical protein
2922	 65.04	0	2934588..2935877	-	429	55379864	-	rrnAC3318	-	hypothetical protein
2923	 59.60	0	2935978..2936373	+	131	55379865	-	rrnAC3319	-	hypothetical protein
2924	 61.81	0	2936421..2937017	+	198	55379866	rnhA	rrnAC3320	-	ribonuclease H-like protein
2925	 60.36	0	2937010..2937564	+	184	55379867	-	rrnAC3321	-	hypothetical protein
2926	 54.44	-2	2937649..2938008	-	119	55379868	-	rrnAC3322	-	transcription regulator
2927	 57.68	-1	2938306..2938839	+	177	55379869	ipp	rrnAC3323	-	inorganic pyrophosphatase
2928	 61.90	0	2938971..2939096	+	41	55379870	-	rrnAC3324	-	hypothetical protein
2929	 61.90	0	2939184..2940527	+	447	55379871	-	rrnAC3325	-	sulfatase arylsulfatase A-like
2930	 64.99	0	2940567..2941640	-	357	55379872	ftsZ4	rrnAC3326	-	cell division protein
2931	 61.96	0	2941768..2942043	-	91	55379873	-	rrnAC3327	-	hypothetical protein
2932	 58.45	-1	2942095..2942715	+	206	55379874	-	rrnAC3328	-	hypothetical protein
2933	 67.27	+1	2942731..2943390	-	219	55379875	hcp3	rrnAC3329	-	halocyanin precursor-like
2934	 65.47	0	2943519..2944268	+	249	55379876	-	rrnAC3330	-	hypothetical protein
2935	 57.53	-1	2945079..2945264	-	61	55379877	-	rrnAC3331	-	hypothetical protein
2936	 67.73	+1	2945414..2946163	-	249	55379878	-	rrnAC3332	-	hypothetical protein
2937	 60.16	0	2946164..2946547	+	127	55379879	-	rrnAC3333	-	hypothetical protein
2938	 66.32	0	2946548..2947702	-	384	55379880	dnaJ2	rrnAC3334	-	chaperone protein DnaJ
2939	 67.82	+1	2947814..2948332	+	172	55379881	-	rrnAC3335	-	hypothetical protein
2940	 59.87	0	2948419..2948727	-	102	55379882	-	rrnAC3336	-	hypothetical protein
2941	 60.12	0	2949358..2950167	+	269	55379883	-	rrnAC3337	-	putative transcriptional regulator
2942	 59.12	0	2950204..2950521	-	105	55379884	-	rrnAC3338	-	hypothetical protein
2943	 63.47	0	2950969..2952876	-	635	55379885	dnaK	rrnAC3339	-	chaperone protein DnaK
2944	 64.32	0	2953042..2953722	-	226	55379886	grpE	rrnAC3340	-	heat shock protein GrpE protein
2945	 55.88	-1	2954115..2954735	-	206	55379887	-	rrnAC3341	-	hypothetical protein
2946	 65.50	0	2954829..2955773	-	314	55379888	truB	rrnAC3342	-	H/ACA RNA-protein complex component Cbf5p
2947	 63.39	0	2955724..2956302	-	192	55379889	cmk	rrnAC3343	-	cytidylate kinase
2948	 62.40	0	2956348..2957238	-	296	55379890	htlB	rrnAC3344	-	HTR-like protein
2949	 62.98	0	2957326..2957976	-	216	55379891	adk	rrnAC3346	-	adenylate kinase
2950	 64.03	0	2958004..2958534	+	176	55379892	bcp2	rrnAC3345	-	bacterioferritin comigratory protein
2951	 60.57	0	2958606..2959655	-	349	55379893	kinA3	rrnAC3347	-	signal-transducing histidine kinase-like
2952	 62.68	0	2959917..2963231	+	1104	55379894	kinA5	rrnAC3349	-	signal-transducing histidine kinase-like
2953	 66.67	0	2960004..2960966	-	320	55379895	thrB	rrnAC3348	-	homoserine kinase
2954	 63.66	0	2963243..2964604	+	453	55379896	-	rrnAC3351	-	hypothetical protein
2955	 62.22	0	2964710..2965474	-	254	55379898	-	rrnAC3352	-	hypothetical protein
2956	 63.07	0	2965440..2966690	+	416	55379897	noxA2	rrnAC3353	-	NADH oxidase
2957	 70.22	+1	2966739..2966963	+	74	55379899	-	rrnAC3354	-	hypothetical protein
2958	 64.51	0	2967016..2967432	+	138	55379900	-	rrnAC3355	-	hypothetical protein
2959	 56.98	-1	2967507..2968280	+	257	55379901	-	rrnAC3356	-	hypothetical protein
2960	 61.42	0	2968335..2968868	+	177	55379902	-	rrnAC3357	-	hypothetical protein
2961	 64.96	0	2968918..2969679	+	253	55379903	-	rrnAC3358	-	hypothetical protein
2962	 61.47	0	2969767..2969997	+	76	55379904	-	rrnAC3359	-	hypothetical protein
2963	 63.59	0	2970154..2973405	+	1083	55379905	carB	rrnAC3360	-	carbamoyl phosphate synthase large subunit
2964	 61.11	0	2973516..2976536	+	1006	55379906	htlD	rrnAC3361	-	HTR-like protein
2965	 61.56	0	2976761..2977387	+	208	55379907	-	rrnAC3362	-	hypothetical protein
2966	 65.81	0	2977674..2978720	-	348	55379908	carA	rrnAC3363	-	carbamoyl phosphate synthase small subunit
2967	 60.39	0	2978823..2979236	+	137	55379909	trh3	rrnAC3365	-	transcription regulator
2968	 65.79	0	2979236..2979349	+	37	55379910	-	rrnAC3366	-	hypothetical protein
2969	 65.18	0	2979380..2980255	+	291	55379911	-	rrnAC3368	-	hypothetical protein
2970	 61.25	0	2980337..2981443	+	368	55379912	htlA	rrnAC3369	-	hypothetical protein
2971	 61.95	0	2981576..2982763	+	395	55379913	-	rrnAC3370	-	signal transducing histidine kinase
2972	 68.09	+1	2982789..2984759	-	656	55379914	yprA2	rrnAC3371	-	ATP-dependant helicase
2973	 70.44	+1	2985223..2986494	-	423	55379915	btuD	rrnAC3372	-	corrinoid ABC transporter ATPase
2974	 67.79	+1	2986491..2987561	-	356	55379917	btuC	rrnAC3374	-	corrinoid ABC transporter permease
2975	 64.58	0	2987560..2988708	+	382	55379916	btuF	rrnAC3375	-	corrinoid ABC transporter substrate-binding protein
2976	 67.08	+1	2988713..2989441	+	242	55379918	-	rrnAC3378	-	5-formyltetrahydrofolate cyclo-ligase
2977	 61.71	0	2989478..2991493	+	671	55379919	htlD	rrnAC3379	-	HTR-like protein
2978	 63.95	0	2991494..2992894	-	466	55379920	lpdA1	rrnAC3381	-	dihydrolipoamide dehydrogenase
2979	 62.85	0	2992992..2995508	-	838	55379921	-	rrnAC3382	-	hypothetical protein
2980	 61.53	0	2995512..2997458	-	648	55379922	-	rrnAC3383	-	hypothetical protein
2981	 55.56	-1	2997642..2998262	+	206	55379923	-	rrnAC3384	-	DNA binding protein putative transcriptional regulator
2982	 56.57	-1	2998259..2998654	-	131	55379924	ntrC	rrnAC3385	-	signal receiver domain-containing protein
2983	 52.36	-2	2998938..2999573	+	211	55379925	tnp	rrnAC3387	-	transposase
2984	 67.00	+1	2999630..3000238	+	202	55379926	-	rrnAC3388	-	hypothetical protein
2985	 59.72	0	3000315..3000602	+	95	55379927	-	rrnAC3390	-	hypothetical protein
2986	 66.20	0	3000599..3001450	-	283	55379928	ppnK	rrnAC3391	-	inorganic polyphosphate/ATP-NAD kinase
2987	 61.62	0	3001559..3002728	+	389	55379929	kaiC2	rrnAC3392	-	circadian regulator
2988	 61.76	0	3002725..3003438	-	237	55379930	-	rrnAC3393	-	hypothetical protein
2989	 60.57	0	3003515..3004039	+	174	55379931	usp4	rrnAC3394	-	universal stress protein
62.75	MEAN

4.09	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.