IslandPathversion 1.0

IslandPath Analysis: Haloarcula marismortui ATCC 43049



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 62.75 STD DEV: 4.09
Haloarcula marismortui ATCC 43049 chromosome I, complete sequence - 1..3131724
3131 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2569	 64.15	0	2582595..2583308	+	237	55379511	-	rrnAC2916	-	hypothetical protein
2570	 57.42	-1	2583355..2584068	+	237	55379512	-	rrnAC2917	-	hypothetical protein
2571	 63.02	0	2584065..2584475	+	136	55379513	-	rrnAC2918	-	hypothetical protein
2572	 61.46	0	2584589..2584876	-	95	55379514	-	rrnAC2919	-	hypothetical protein
2573	 68.47	+1	2585023..2585799	+	258	55379515	-	rrnAC2920	-	hypothetical protein
2574	 57.58	-1	2585854..2586018	+	54	55379516	-	rrnAC2922	-	hypothetical protein
2575	 64.57	0	2586112..2586588	+	158	55379517	-	rrnAC2923	-	hypothetical protein
2576	 64.57	0	2586612..2587328	-	238	55379518	guaA3	rrnAC2924	-	GMP synthase
2577	 60.75	0	2587713..2587898	-	61	55379519	-	rrnAC2925	-	hypothetical protein
2578	 62.26	0	2587905..2588699	-	264	55379520	yafB-4	rrnAC2927	-	oxidoreductase
2579	 64.63	0	2588816..2589799	-	327	55379521	gfo1	rrnAC2929	-	glucose-fructose oxidoreductase
2580	 65.80	0	2589830..2590870	-	346	55379522	-	rrnAC2930	-	hypothetical protein
2581	 66.67	0	2591229..2591516	-	95	55379523	-	rrnAC2931	-	hypothetical protein
2582	 68.72	+1	2591704..2592141	+	145	55379524	-	rrnAC2932	-	hypothetical protein
2583	 67.64	+1	2592151..2592870	+	239	161723232	-	rrnAC2933	-	hypothetical protein
2584	 60.12	0	2593047..2593214	+	55	55379526	-	rrnAC2935	-	hypothetical protein
2585	 59.86	0	2593286..2594020	+	244	55379527	boa	rrnAC2936	-	bacterio-opsin activator-like protein
2586	 67.29	+1	2594052..2596946	-	964	55379528	mutS1	rrnAC2937	-	DNA mismatch repair protein
2587	 61.03	0	2597000..2597389	+	129	55379529	-	rrnAC2938	-	hypothetical protein
2588	 65.24	0	2597564..2599243	+	559	55379530	cctB	rrnAC2939	-	thermosome beta subunit
2589	 65.39	0	2599725..2600588	-	287	55379531	-	rrnAC2940	-	hypothetical protein
2590	 66.57	0	2600665..2601660	+	331	55379532	ocd2	rrnAC2941	-	ornithine cyclodeaminase
2591	 62.61	0	2601661..2601882	-	73	55379533	-	rrnAC2942	-	hypothetical protein
2592	 64.29	0	2601926..2602093	-	55	55379534	-	rrnAC2943	-	hypothetical protein
2593	 60.00	0	2602093..2602377	-	94	55379535	-	rrnAC2944	-	hypothetical protein
2594	 61.49	0	2602611..2604002	+	463	55379536	-	rrnAC2945	-	signal-transducing histidine kinase
2595	 65.40	0	2604154..2606841	+	895	55379537	leuS	rrnAC2947	-	leucyl-tRNA synthetase
2596	 64.02	0	2606874..2607326	-	150	55379538	bcp3	rrnAC2948	-	bacterioferritin comigratory protein
2597	 63.97	0	2607329..2607736	-	135	55379539	hsp20a	rrnAC2949	-	small heat shock protein
2598	 65.56	0	2607799..2608614	-	271	55379540	pheA	rrnAC2950	-	prephenate dehydratase
2599	 64.40	0	2608690..2609529	-	279	55379541	yccK	rrnAC2951	-	oxidoreductase
2600	 63.33	0	2609607..2610236	-	209	55379542	-	rrnAC2952	-	hypothetical protein
2601	 65.19	0	2610383..2611801	-	472	55379543	lpdA2	rrnAC2953	-	dihydrolipoamide dehydrogenase
2602	 65.62	0	2611859..2612239	-	126	55379544	-	rrnAC2954	-	hypothetical protein
2603	 68.01	+1	2612295..2613932	-	545	55379545	pdhC2	rrnAC2955	-	branched-chain alpha-keto acid dehydrogenase subunit E2
2604	 64.46	0	2613936..2614934	-	332	55379546	pdhB1	rrnAC2956	-	pyruvate dehydrogenase
2605	 63.96	0	2614931..2616037	-	368	55379547	pdhA3	rrnAC2957	-	pyruvate dehydrogenase E1 component alpha subunit
2606	 65.16	0	2616210..2617139	-	309	55379548	lipA	rrnAC2959	-	lipoyl synthase
2607	 64.81	0	2617295..2617672	-	125	55379549	-	rrnAC2960	-	hypothetical protein
2608	 65.86	0	2618215..2620686	+	823	55379550	brr2	rrnAC2961	-	Pre-mRNA splicing helicase
2609	 65.60	0	2621314..2621970	-	218	55379551	-	rrnAC2962	-	putative haloacid dehalogenase-like hydrolase
2610	 65.42	0	2622089..2622811	+	240	55379552	top1	rrnAC2963	-	topoisomerase DNA binding C4 zinc finger
2611	 66.47	0	2622899..2623906	+	335	55379553	endA	rrnAC2964	-	tRNA splicing endonuclease
2612	 66.12	0	2624037..2625686	+	549	55379554	trpS	rrnAC2965	-	tryptophanyl-tRNA synthetase
2613	 65.48	0	2625962..2627473	+	503	55379555	pheS	rrnAC2966	-	phenylalanyl-tRNA synthetase subunit alpha
2614	 64.79	0	2627473..2629227	+	584	55379556	pheT	rrnAC2967	-	phenylalanyl-tRNA synthetase subunit beta
2615	 62.29	0	2629261..2629740	-	159	55379557	-	rrnAC2968	-	hypothetical protein
2616	 63.72	0	2629780..2630832	-	350	55379558	pyrD	rrnAC2969	-	dihydroorotate dehydrogenase 2
2617	 50.51	-2	2630938..2631135	-	65	55379559	-	rrnAC2970	-	hypothetical protein
2618	 58.69	0	2631342..2631692	+	116	55379560	-	rrnAC2971	-	hypothetical protein
2619	 59.30	0	2637498..2637755	+	85	55379561	-	rrnAC2973	-	hypothetical protein
2620	 55.40	-1	2637950..2639209	+	419	55379562	-	rrnAC2974	-	hypothetical protein
2621	 61.38	0	2639220..2640524	-	434	55379563	-	rrnAC2976	-	hypothetical protein
2622	 50.74	-2	2640597..2641205	-	202	55379564	-	rrnAC2977	-	hypothetical protein
2623	 55.46	-1	2641378..2642046	+	222	55379565	-	rrnAC2978	-	hypothetical protein
2624	 60.47	0	2642714..2643052	+	112	55379566	-	rrnAC2979	-	hypothetical protein
2625	 49.15	-2	2643049..2644584	+	511	55379567	-	rrnAC2980	-	hypothetical protein
2626	 58.35	-1	2644866..2646092	+	408	55379568	-	rrnAC2981	-	hypothetical protein
2627	 57.39	-1	2646332..2647474	+	380	55379569	-	rrnAC2982	-	hypothetical protein
2628	 61.81	0	2648121..2648429	+	102	55379570	-	rrnAC2983	-	hypothetical protein
2629	 55.00	-1	2648542..2648721	+	59	55379571	-	rrnAC2984	-	hypothetical protein
2630	 61.86	0	2648782..2649114	+	110	55379572	-	rrnAC2985	-	hypothetical protein
2631	 60.32	0	2649227..2650093	+	288	55379573	-	rrnAC2986	-	hypothetical protein
2632	 61.40	0	2650130..2650357	-	75	55379574	-	rrnAC2987	-	hypothetical protein
2633	 65.49	0	2650896..2651573	-	225	55379575	-	rrnAC2988	-	hypothetical protein
2634	 58.82	0	2651622..2651774	-	50	55379576	-	rrnAC2989	-	hypothetical protein
2635	 60.23	0	2652044..2652385	+	113	55379577	-	rrnAC2990	-	hypothetical protein
2636	 63.66	0	2652478..2654241	+	587	55379578	nirA2	rrnAC2992	-	ferredoxin-nitrite reductase
2637	 66.18	0	2655109..2655720	+	203	55379579	-	rrnAC2993	-	hypothetical protein
2638	 63.13	0	2655835..2656428	-	197	55379580	-	rrnAC2995	-	hypothetical protein
2639	 63.80	0	2656630..2658690	+	686	55379581	uvrB	rrnAC2996	-	excinuclease ABC subunit B
2640	 65.89	0	2658787..2660337	+	516	55379582	-	rrnAC2997	-	membrane bound his kinase A
2641	 66.50	0	2660440..2661045	+	201	55379583	cbiT	rrnAC2998	-	precorrin-8W decarboxylase
2642	 68.05	+1	2661042..2661839	+	265	55379584	cbiL	rrnAC3000	-	cobalt-precorrin-2 C(20)-methyltransferase
2643	 65.30	0	2661832..2662710	+	292	55379585	cbiF	rrnAC3001	-	cobalamin biosynthesis precorrin-3 methylase
2644	 65.23	0	2662710..2663681	+	323	55379586	cbiG	rrnAC3003	-	cobalamin biosynthesis protein CbiG
2645	 62.48	0	2663839..2664603	+	254	55379587	fabG	rrnAC3004	-	3-ketoacyl-(acyl-carrier-protein) reductase
2646	 65.97	0	2664752..2665750	+	332	55379588	cobH	rrnAC3005	-	precorrin-3B C17-methyltransferase
2647	 65.76	0	2665713..2666153	-	146	55379589	-	rrnAC3007	-	hypothetical protein
2648	 65.28	0	2666188..2666910	+	240	55379590	cbiH	rrnAC3008	-	precorrin-3B C17-methyltransferase
2649	 66.30	0	2666910..2667185	+	91	55379591	-	rrnAC3009	-	hypothetical protein
2650	 67.27	+1	2667182..2667841	+	219	55379592	-	rrnAC3010	-	hypothetical protein
2651	 68.79	+1	2667838..2669061	+	407	55379593	cbiK	rrnAC3011	-	colbalt chelase thioredoxin
2652	 68.28	+1	2669086..2669457	+	123	55379594	-	rrnAC3012	-	hypothetical protein
2653	 69.43	+1	2669450..2670715	+	421	55379595	tup1	rrnAC3013	-	Tup1 like transcriptional repressor
2654	 66.40	0	2670840..2671601	+	253	55379596	-	rrnAC3014	-	hypothetical protein
2655	 69.62	+1	2671616..2672326	-	236	55379597	-	rrnAC3015	-	hypothetical protein
2656	 62.32	0	2672326..2672532	-	68	55379598	-	rrnAC3016	-	hypothetical protein
2657	 70.19	+1	2672602..2674761	-	719	55379599	hmcA	rrnAC3018	-	protporphyrin IX magnesium chelatase
2658	 67.38	+1	2674797..2678735	+	1312	55379600	cobN	rrnAC3019	-	cobalamin biosynthesis protein
2659	 67.63	+1	2678725..2679450	+	241	55379601	cbiC	rrnAC3020	-	precorrin-8X methylmutase
2660	 67.32	+1	2679518..2680282	+	254	55379602	cbiJ	rrnAC3021	-	cobalt-precorrin-6Y C(5)-methyltransferase
2661	 61.11	0	2680305..2680772	-	155	55379603	-	rrnAC3022	-	hypothetical protein
2662	 66.93	+1	2680849..2681622	-	257	55379604	cbiX	rrnAC3023	-	putative cobalamin biosynthesis protein
2663	 62.58	0	2681793..2682281	+	162	55379605	-	rrnAC3024	-	hypothetical protein
2664	 62.23	0	2682424..2683527	+	367	55379606	napA	rrnAC3025	-	sodium/protn antiporter putative
2665	 66.28	0	2683549..2684595	-	348	55379607	yfmJ1	rrnAC3026	-	quinone oxidoreductase
2666	 60.00	0	2685056..2685250	+	64	55379608	-	rrnAC3027	-	hypothetical protein
2667	 66.81	0	2685335..2686051	-	238	55379609	-	rrnAC3028	-	hypothetical protein
2668	 63.92	0	2686055..2689507	-	1150	55379610	-	rrnAC3030	-	hypothetical protein
62.75	MEAN

4.09	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.