IslandPathversion 1.0

IslandPath Analysis: Haloarcula marismortui ATCC 43049



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 62.75 STD DEV: 4.09
Haloarcula marismortui ATCC 43049 chromosome I, complete sequence - 1..3131724
3131 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2529	 55.21	-1	2545338..2545433	-	31	55379471	-	rrnAC2865	-	hypothetical protein
2530	 64.60	0	2545505..2545891	+	128	55379472	-	rrnAC2866	-	hypothetical protein
2531	 65.71	0	2545916..2547268	-	450	55379473	dip1	rrnAC2867	-	DNA damage-inducible protein
2532	 62.48	0	2547473..2548546	+	357	55379474	potD2	rrnAC2868	-	spermidine/putrescine ABC transporter spermidine/putrescine binding protein
2533	 66.04	0	2548687..2549637	+	316	55379475	potA2	rrnAC2870	-	spermidine/putrescine ABC transporter ATP-binding protein
2534	 63.11	0	2549624..2550466	+	280	55379476	potB2	rrnAC2872	-	spermidine/putrescine ABC transporter permease protein
2535	 64.31	0	2550460..2551266	+	268	55379477	potC2	rrnAC2873	-	spermidine/putrescine ABC transporter permease
2536	 61.74	0	2551339..2551785	+	148	55379478	phaJ1	rrnAC2874	-	(R)-specific enoyl -CoA hydratase
2537	 61.38	0	2551775..2552020	-	81	55379479	-	rrnAC2875	-	hypothetical protein
2538	 67.83	+1	2552136..2554535	+	799	55379480	rad24-2	rrnAC2876	-	ski2-like helicase
2539	 64.20	0	2554535..2555062	+	175	55379481	-	rrnAC2877	-	hypothetical protein
2540	 68.75	+1	2555101..2555388	+	95	55379482	-	rrnAC2878	-	hypothetical protein
2541	 66.85	+1	2555595..2556689	+	364	55379483	yqjM2	rrnAC2880	-	NADH-dependent flavin oxidoreductase
2542	 64.65	0	2556766..2557608	+	280	55379484	-	rrnAC2881	-	hypothetical protein
2543	 60.08	0	2557609..2558352	-	247	55379485	maoC1	rrnAC2882	-	MaoC family protein
2544	 56.67	-1	2558455..2558754	+	99	55379486	-	rrnAC2883	-	hypothetical protein
2545	 60.04	0	2558762..2559319	+	185	55379487	-	rrnAC2884	-	hypothetical protein
2546	 60.62	0	2559365..2559910	+	181	55379488	-	rrnAC2885	-	hypothetical protein
2547	 61.97	0	2559913..2561340	+	475	55379489	phaC	rrnAC2886	-	poly(3-hydroxyalkanoate) synthase
2548	 65.80	0	2561380..2561838	+	152	55379490	-	rrnAC2888	-	hypothetical protein
2549	 64.44	0	2561847..2562071	-	74	55379491	-	rrnAC2889	-	hypothetical protein
2550	 65.60	0	2562382..2564154	-	590	55379492	cctA2	rrnAC2891	-	thermosome alpha subunit
2551	 62.75	0	2564211..2565206	-	331	55379493	-	rrnAC2892	-	hypothetical protein
2552	 65.98	0	2565353..2566225	-	290	55379494	-	rrnAC2893	-	hypothetical protein
2553	 56.90	-1	2566482..2566655	+	57	55379495	-	rrnAC2894	-	hypothetical protein
2554	 63.81	0	2566642..2567376	-	244	55379496	-	rrnAC2895	-	hypothetical protein
2555	 66.99	+1	2567373..2568311	-	312	55379497	-	rrnAC2896	-	hypothetical protein
2556	 62.89	0	2568387..2569391	-	334	55379498	galE2	rrnAC2897	-	UDP-glucose 4-epimerase
2557	 55.38	-1	2569813..2570007	-	64	55379499	cspD2	rrnAC2900	-	cold shock protein
2558	 64.24	0	2570619..2571896	+	425	55379500	uvrB	rrnAC2901	-	putative uvrB
2559	 67.11	+1	2572070..2573206	-	378	55379501	-	rrnAC2902	-	putative methyltransferase
2560	 65.79	0	2573157..2574296	-	379	55379502	nmd3	rrnAC2903	-	putative nonsense mediated mRNA decay protein
2561	 66.44	0	2574383..2575276	-	297	55379503	galE6	rrnAC2904	-	UDP-glucose 4-epimerase
2562	 62.91	0	2575404..2576282	+	292	55379504	htpX1	rrnAC2906	-	heat shock protein HtpX
2563	 64.56	0	2576700..2577317	+	205	55379505	-	rrnAC2907	-	hypothetical protein
2564	 66.23	0	2577319..2577777	+	152	55379506	-	rrnAC2908	-	hypothetical protein
2565	 62.78	0	2577913..2578968	+	351	55379507	radA	rrnAC2910	-	DNA repair and recombination protein RadA
2566	 64.48	0	2579400..2580452	-	350	55379508	gsp	rrnAC2912	-	general stress protein 69
2567	 66.17	0	2580477..2581490	-	337	55379509	-	rrnAC2913	-	hypothetical protein
2568	 63.69	0	2581629..2582534	+	301	55379510	yvaI	rrnAC2914	-	acetyltransferase-like
2569	 64.15	0	2582595..2583308	+	237	55379511	-	rrnAC2916	-	hypothetical protein
2570	 57.42	-1	2583355..2584068	+	237	55379512	-	rrnAC2917	-	hypothetical protein
2571	 63.02	0	2584065..2584475	+	136	55379513	-	rrnAC2918	-	hypothetical protein
2572	 61.46	0	2584589..2584876	-	95	55379514	-	rrnAC2919	-	hypothetical protein
2573	 68.47	+1	2585023..2585799	+	258	55379515	-	rrnAC2920	-	hypothetical protein
2574	 57.58	-1	2585854..2586018	+	54	55379516	-	rrnAC2922	-	hypothetical protein
2575	 64.57	0	2586112..2586588	+	158	55379517	-	rrnAC2923	-	hypothetical protein
2576	 64.57	0	2586612..2587328	-	238	55379518	guaA3	rrnAC2924	-	GMP synthase
2577	 60.75	0	2587713..2587898	-	61	55379519	-	rrnAC2925	-	hypothetical protein
2578	 62.26	0	2587905..2588699	-	264	55379520	yafB-4	rrnAC2927	-	oxidoreductase
2579	 64.63	0	2588816..2589799	-	327	55379521	gfo1	rrnAC2929	-	glucose-fructose oxidoreductase
2580	 65.80	0	2589830..2590870	-	346	55379522	-	rrnAC2930	-	hypothetical protein
2581	 66.67	0	2591229..2591516	-	95	55379523	-	rrnAC2931	-	hypothetical protein
2582	 68.72	+1	2591704..2592141	+	145	55379524	-	rrnAC2932	-	hypothetical protein
2583	 67.64	+1	2592151..2592870	+	239	161723232	-	rrnAC2933	-	hypothetical protein
2584	 60.12	0	2593047..2593214	+	55	55379526	-	rrnAC2935	-	hypothetical protein
2585	 59.86	0	2593286..2594020	+	244	55379527	boa	rrnAC2936	-	bacterio-opsin activator-like protein
2586	 67.29	+1	2594052..2596946	-	964	55379528	mutS1	rrnAC2937	-	DNA mismatch repair protein
2587	 61.03	0	2597000..2597389	+	129	55379529	-	rrnAC2938	-	hypothetical protein
2588	 65.24	0	2597564..2599243	+	559	55379530	cctB	rrnAC2939	-	thermosome beta subunit
2589	 65.39	0	2599725..2600588	-	287	55379531	-	rrnAC2940	-	hypothetical protein
2590	 66.57	0	2600665..2601660	+	331	55379532	ocd2	rrnAC2941	-	ornithine cyclodeaminase
2591	 62.61	0	2601661..2601882	-	73	55379533	-	rrnAC2942	-	hypothetical protein
2592	 64.29	0	2601926..2602093	-	55	55379534	-	rrnAC2943	-	hypothetical protein
2593	 60.00	0	2602093..2602377	-	94	55379535	-	rrnAC2944	-	hypothetical protein
2594	 61.49	0	2602611..2604002	+	463	55379536	-	rrnAC2945	-	signal-transducing histidine kinase
2595	 65.40	0	2604154..2606841	+	895	55379537	leuS	rrnAC2947	-	leucyl-tRNA synthetase
2596	 64.02	0	2606874..2607326	-	150	55379538	bcp3	rrnAC2948	-	bacterioferritin comigratory protein
2597	 63.97	0	2607329..2607736	-	135	55379539	hsp20a	rrnAC2949	-	small heat shock protein
2598	 65.56	0	2607799..2608614	-	271	55379540	pheA	rrnAC2950	-	prephenate dehydratase
2599	 64.40	0	2608690..2609529	-	279	55379541	yccK	rrnAC2951	-	oxidoreductase
2600	 63.33	0	2609607..2610236	-	209	55379542	-	rrnAC2952	-	hypothetical protein
2601	 65.19	0	2610383..2611801	-	472	55379543	lpdA2	rrnAC2953	-	dihydrolipoamide dehydrogenase
2602	 65.62	0	2611859..2612239	-	126	55379544	-	rrnAC2954	-	hypothetical protein
2603	 68.01	+1	2612295..2613932	-	545	55379545	pdhC2	rrnAC2955	-	branched-chain alpha-keto acid dehydrogenase subunit E2
2604	 64.46	0	2613936..2614934	-	332	55379546	pdhB1	rrnAC2956	-	pyruvate dehydrogenase
2605	 63.96	0	2614931..2616037	-	368	55379547	pdhA3	rrnAC2957	-	pyruvate dehydrogenase E1 component alpha subunit
2606	 65.16	0	2616210..2617139	-	309	55379548	lipA	rrnAC2959	-	lipoyl synthase
2607	 64.81	0	2617295..2617672	-	125	55379549	-	rrnAC2960	-	hypothetical protein
2608	 65.86	0	2618215..2620686	+	823	55379550	brr2	rrnAC2961	-	Pre-mRNA splicing helicase
2609	 65.60	0	2621314..2621970	-	218	55379551	-	rrnAC2962	-	putative haloacid dehalogenase-like hydrolase
2610	 65.42	0	2622089..2622811	+	240	55379552	top1	rrnAC2963	-	topoisomerase DNA binding C4 zinc finger
2611	 66.47	0	2622899..2623906	+	335	55379553	endA	rrnAC2964	-	tRNA splicing endonuclease
2612	 66.12	0	2624037..2625686	+	549	55379554	trpS	rrnAC2965	-	tryptophanyl-tRNA synthetase
2613	 65.48	0	2625962..2627473	+	503	55379555	pheS	rrnAC2966	-	phenylalanyl-tRNA synthetase subunit alpha
2614	 64.79	0	2627473..2629227	+	584	55379556	pheT	rrnAC2967	-	phenylalanyl-tRNA synthetase subunit beta
2615	 62.29	0	2629261..2629740	-	159	55379557	-	rrnAC2968	-	hypothetical protein
2616	 63.72	0	2629780..2630832	-	350	55379558	pyrD	rrnAC2969	-	dihydroorotate dehydrogenase 2
2617	 50.51	-2	2630938..2631135	-	65	55379559	-	rrnAC2970	-	hypothetical protein
2618	 58.69	0	2631342..2631692	+	116	55379560	-	rrnAC2971	-	hypothetical protein
2619	 59.30	0	2637498..2637755	+	85	55379561	-	rrnAC2973	-	hypothetical protein
2620	 55.40	-1	2637950..2639209	+	419	55379562	-	rrnAC2974	-	hypothetical protein
2621	 61.38	0	2639220..2640524	-	434	55379563	-	rrnAC2976	-	hypothetical protein
2622	 50.74	-2	2640597..2641205	-	202	55379564	-	rrnAC2977	-	hypothetical protein
2623	 55.46	-1	2641378..2642046	+	222	55379565	-	rrnAC2978	-	hypothetical protein
2624	 60.47	0	2642714..2643052	+	112	55379566	-	rrnAC2979	-	hypothetical protein
2625	 49.15	-2	2643049..2644584	+	511	55379567	-	rrnAC2980	-	hypothetical protein
2626	 58.35	-1	2644866..2646092	+	408	55379568	-	rrnAC2981	-	hypothetical protein
2627	 57.39	-1	2646332..2647474	+	380	55379569	-	rrnAC2982	-	hypothetical protein
2628	 61.81	0	2648121..2648429	+	102	55379570	-	rrnAC2983	-	hypothetical protein
62.75	MEAN

4.09	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.