IslandPath Analysis: Haloarcula marismortui ATCC 43049



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 62.75   STD DEV: 4.09
Haloarcula marismortui ATCC 43049 chromosome I, complete sequence - 1..3131724
3131 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2491	 67.34	+1	2509981..2510277	+	98	55379433	-	rrnAC2821	-	hypothetical protein
2492	 70.55	+1	2510297..2510605	-	102	55379434	-	rrnAC2822	-	hypothetical protein
2493	 58.13	-1	2511290..2511535	-	81	55379435	-	rrnAC2824	-	hypothetical protein
2494	 67.57	+1	2511605..2512492	-	295	55379436	-	rrnAC2826	-	hypothetical protein
2495	 66.83	0	2512888..2514117	+	409	55379437	eif2G	rrnAC2827	-	translation initiation factor IF-2 subunit gamma
2496	 62.96	0	2514117..2514494	+	125	55379438	-	rrnAC2828	-	hypothetical protein
2497	 64.08	0	2514498..2515076	+	192	55379439	rpoE'	rrnAC2829	-	DNA-directed RNA polymerase subunit E'
2498	 66.16	0	2515076..2515273	+	65	55379440	rpoE''	rrnAC2830	-	DNA-directed RNA polymerase subunit E''
2499	 67.15	+1	2515404..2515814	+	136	55379441	-	rrnAC2831	-	hypothetical protein
2500	 61.54	0	2515837..2515992	-	51	55379442	-	rrnAC2832	-	hypothetical protein
2501	 68.87	+1	2516082..2517758	-	558	55379443	-	rrnAC2834	-	putative RNA methylase
2502	 63.72	0	2517795..2518643	-	282	55379444	hisG	rrnAC2835	-	ATP phosphoribosyltransferase
2503	 66.59	0	2518709..2520067	-	452	55379446	dld	rrnAC2836	-	sugar and other transporter
2504	 66.74	0	2520066..2521364	+	432	55379445	trzA3	rrnAC2837	-	N-ethylammeline chlorohydrolase
2505	 65.07	0	2521503..2522501	+	332	55379447	-	rrnAC2838	-	hypothetical protein
2506	 63.46	0	2522546..2523823	+	425	55379448	ahcY	rrnAC2840	-	S-adenosyl-L-homocysteine hydrolase
2507	 60.31	0	2524103..2524558	+	151	55379449	-	rrnAC2842	-	hypothetical protein
2508	 56.21	-1	2524695..2524847	-	50	55379450	-	rrnAC2843	-	hypothetical protein
2509	 62.77	0	2525128..2526204	+	358	55379451	pri2	rrnAC2844	-	DNA primase large subunit
2510	 59.52	0	2526201..2526410	-	69	55379452	-	rrnAC2845	-	hypothetical protein
2511	 66.67	0	2526540..2527187	+	215	55379453	-	rrnAC2846	-	hypothetical protein
2512	 65.51	0	2527206..2527724	-	172	55379454	hjr	rrnAC2847	-	holliday junction resolvase
2513	 64.04	0	2527917..2528867	+	316	55379455	-	rrnAC2848	-	hypothetical protein
2514	 63.56	0	2528871..2529482	-	203	55379456	-	rrnAC2849	-	hypothetical protein
2515	 68.56	+1	2529519..2530415	-	298	55379457	pcbD-1	rrnAC2850	-	alpha/beta fold family hydrolase
2516	 61.83	0	2530422..2531207	-	261	55379458	pcnA	rrnAC2851	-	DNA polymerase sliding clamp
2517	 65.38	0	2531326..2532411	-	361	55379459	nirK	rrnAC2853	-	nitrite reductase copper containing protein
2518	 64.65	0	2532726..2533517	+	263	55379460	ftsJ	rrnAC2854	-	ribosomal RNA large subunit methyltransferase J
2519	 65.24	0	2533535..2534233	-	232	55379461	-	rrnAC2855	-	hypothetical protein
2520	 58.76	0	2534223..2534399	-	58	55379462	-	rrnAC2856	-	hypothetical protein
2521	 63.23	0	2534666..2536903	-	745	55379463	tatC1	rrnAC2857	-	Sec-independent protein translocase protein TatC
2522	 66.73	0	2536966..2538585	+	539	55379464	tatC2	rrnAC2858	-	Sec-independent protein translocase TatC
2523	 67.55	+1	2538539..2539216	+	225	55379465	gpmB	rrnAC2859	-	phosphoglycerate mutase
2524	 64.49	0	2539228..2540100	-	290	55379466	trmU	rrnAC2860	-	tRNA methyl transferase
2525	 69.41	+1	2540230..2542308	+	692	55379467	mutS2	rrnAC2861	-	mismatch repair protein
2526	 62.59	0	2542392..2543519	+	375	55379468	cdc6	rrnAC2862	-	cell division control protein 6
2527	 56.76	-1	2543688..2544545	+	285	55379469	-	rrnAC2863	-	hypothetical protein
2528	 66.41	0	2544552..2545337	-	261	55379470	-	rrnAC2864	-	hypothetical protein
2529	 55.21	-1	2545338..2545433	-	31	55379471	-	rrnAC2865	-	hypothetical protein
2530	 64.60	0	2545505..2545891	+	128	55379472	-	rrnAC2866	-	hypothetical protein
2531	 65.71	0	2545916..2547268	-	450	55379473	dip1	rrnAC2867	-	DNA damage-inducible protein
2532	 62.48	0	2547473..2548546	+	357	55379474	potD2	rrnAC2868	-	spermidine/putrescine ABC transporter spermidine/putrescine binding protein
2533	 66.04	0	2548687..2549637	+	316	55379475	potA2	rrnAC2870	-	spermidine/putrescine ABC transporter ATP-binding protein
2534	 63.11	0	2549624..2550466	+	280	55379476	potB2	rrnAC2872	-	spermidine/putrescine ABC transporter permease protein
2535	 64.31	0	2550460..2551266	+	268	55379477	potC2	rrnAC2873	-	spermidine/putrescine ABC transporter permease
2536	 61.74	0	2551339..2551785	+	148	55379478	phaJ1	rrnAC2874	-	(R)-specific enoyl -CoA hydratase
2537	 61.38	0	2551775..2552020	-	81	55379479	-	rrnAC2875	-	hypothetical protein
2538	 67.83	+1	2552136..2554535	+	799	55379480	rad24-2	rrnAC2876	-	ski2-like helicase
2539	 64.20	0	2554535..2555062	+	175	55379481	-	rrnAC2877	-	hypothetical protein
2540	 68.75	+1	2555101..2555388	+	95	55379482	-	rrnAC2878	-	hypothetical protein
2541	 66.85	+1	2555595..2556689	+	364	55379483	yqjM2	rrnAC2880	-	NADH-dependent flavin oxidoreductase
2542	 64.65	0	2556766..2557608	+	280	55379484	-	rrnAC2881	-	hypothetical protein
2543	 60.08	0	2557609..2558352	-	247	55379485	maoC1	rrnAC2882	-	MaoC family protein
2544	 56.67	-1	2558455..2558754	+	99	55379486	-	rrnAC2883	-	hypothetical protein
2545	 60.04	0	2558762..2559319	+	185	55379487	-	rrnAC2884	-	hypothetical protein
2546	 60.62	0	2559365..2559910	+	181	55379488	-	rrnAC2885	-	hypothetical protein
2547	 61.97	0	2559913..2561340	+	475	55379489	phaC	rrnAC2886	-	poly(3-hydroxyalkanoate) synthase
2548	 65.80	0	2561380..2561838	+	152	55379490	-	rrnAC2888	-	hypothetical protein
2549	 64.44	0	2561847..2562071	-	74	55379491	-	rrnAC2889	-	hypothetical protein
2550	 65.60	0	2562382..2564154	-	590	55379492	cctA2	rrnAC2891	-	thermosome alpha subunit
2551	 62.75	0	2564211..2565206	-	331	55379493	-	rrnAC2892	-	hypothetical protein
2552	 65.98	0	2565353..2566225	-	290	55379494	-	rrnAC2893	-	hypothetical protein
2553	 56.90	-1	2566482..2566655	+	57	55379495	-	rrnAC2894	-	hypothetical protein
2554	 63.81	0	2566642..2567376	-	244	55379496	-	rrnAC2895	-	hypothetical protein
2555	 66.99	+1	2567373..2568311	-	312	55379497	-	rrnAC2896	-	hypothetical protein
2556	 62.89	0	2568387..2569391	-	334	55379498	galE2	rrnAC2897	-	UDP-glucose 4-epimerase
2557	 55.38	-1	2569813..2570007	-	64	55379499	cspD2	rrnAC2900	-	cold shock protein
2558	 64.24	0	2570619..2571896	+	425	55379500	uvrB	rrnAC2901	-	putative uvrB
2559	 67.11	+1	2572070..2573206	-	378	55379501	-	rrnAC2902	-	putative methyltransferase
2560	 65.79	0	2573157..2574296	-	379	55379502	nmd3	rrnAC2903	-	putative nonsense mediated mRNA decay protein
2561	 66.44	0	2574383..2575276	-	297	55379503	galE6	rrnAC2904	-	UDP-glucose 4-epimerase
2562	 62.91	0	2575404..2576282	+	292	55379504	htpX1	rrnAC2906	-	heat shock protein HtpX
2563	 64.56	0	2576700..2577317	+	205	55379505	-	rrnAC2907	-	hypothetical protein
2564	 66.23	0	2577319..2577777	+	152	55379506	-	rrnAC2908	-	hypothetical protein
2565	 62.78	0	2577913..2578968	+	351	55379507	radA	rrnAC2910	-	DNA repair and recombination protein RadA
2566	 64.48	0	2579400..2580452	-	350	55379508	gsp	rrnAC2912	-	general stress protein 69
2567	 66.17	0	2580477..2581490	-	337	55379509	-	rrnAC2913	-	hypothetical protein
2568	 63.69	0	2581629..2582534	+	301	55379510	yvaI	rrnAC2914	-	acetyltransferase-like
2569	 64.15	0	2582595..2583308	+	237	55379511	-	rrnAC2916	-	hypothetical protein
2570	 57.42	-1	2583355..2584068	+	237	55379512	-	rrnAC2917	-	hypothetical protein
2571	 63.02	0	2584065..2584475	+	136	55379513	-	rrnAC2918	-	hypothetical protein
2572	 61.46	0	2584589..2584876	-	95	55379514	-	rrnAC2919	-	hypothetical protein
2573	 68.47	+1	2585023..2585799	+	258	55379515	-	rrnAC2920	-	hypothetical protein
2574	 57.58	-1	2585854..2586018	+	54	55379516	-	rrnAC2922	-	hypothetical protein
2575	 64.57	0	2586112..2586588	+	158	55379517	-	rrnAC2923	-	hypothetical protein
2576	 64.57	0	2586612..2587328	-	238	55379518	guaA3	rrnAC2924	-	GMP synthase
2577	 60.75	0	2587713..2587898	-	61	55379519	-	rrnAC2925	-	hypothetical protein
2578	 62.26	0	2587905..2588699	-	264	55379520	yafB-4	rrnAC2927	-	oxidoreductase
2579	 64.63	0	2588816..2589799	-	327	55379521	gfo1	rrnAC2929	-	glucose-fructose oxidoreductase
2580	 65.80	0	2589830..2590870	-	346	55379522	-	rrnAC2930	-	hypothetical protein
2581	 66.67	0	2591229..2591516	-	95	55379523	-	rrnAC2931	-	hypothetical protein
2582	 68.72	+1	2591704..2592141	+	145	55379524	-	rrnAC2932	-	hypothetical protein
2583	 67.64	+1	2592151..2592870	+	239	161723232	-	rrnAC2933	-	hypothetical protein
2584	 60.12	0	2593047..2593214	+	55	55379526	-	rrnAC2935	-	hypothetical protein
2585	 59.86	0	2593286..2594020	+	244	55379527	boa	rrnAC2936	-	bacterio-opsin activator-like protein
2586	 67.29	+1	2594052..2596946	-	964	55379528	mutS1	rrnAC2937	-	DNA mismatch repair protein
2587	 61.03	0	2597000..2597389	+	129	55379529	-	rrnAC2938	-	hypothetical protein
2588	 65.24	0	2597564..2599243	+	559	55379530	cctB	rrnAC2939	-	thermosome beta subunit
2589	 65.39	0	2599725..2600588	-	287	55379531	-	rrnAC2940	-	hypothetical protein
2590	 66.57	0	2600665..2601660	+	331	55379532	ocd2	rrnAC2941	-	ornithine cyclodeaminase
62.75	MEAN

4.09	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.