IslandPathversion 1.0

IslandPath Analysis: Haloarcula marismortui ATCC 43049



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 62.75 STD DEV: 4.09
Haloarcula marismortui ATCC 43049 chromosome I, complete sequence - 1..3131724
3131 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2382	 55.40	-1	2402769..2402981	-	70	55379324	-	rrnAC2698	-	hypothetical protein
2383	 62.41	0	2403286..2404155	+	289	55379325	-	rrnAC2699	-	putative inosine monophosphate dehydrogenase
2384	 65.31	0	2404152..2405996	+	614	55379326	glyS	rrnAC2701	-	glycyl-tRNA synthetase
2385	 67.33	+1	2405997..2406596	+	199	55379327	-	rrnAC2702	-	hypothetical protein
2386	 65.22	0	2406663..2409221	+	852	55379328	eif4A	rrnAC2704	-	Hef nuclease
2387	 66.26	0	2409218..2409946	-	242	55379329	-	rrnAC2705	-	hypothetical protein
2388	 64.04	0	2410074..2410988	+	304	55379330	mdh	rrnAC2706	-	malate dehydrogenase
2389	 57.14	-1	2411112..2411237	-	41	55379331	-	rrnAC2707	-	hypothetical protein
2390	 64.92	0	2411371..2412057	-	228	55379332	-	rrnAC2708	-	hypothetical protein
2391	 59.38	0	2412057..2412440	-	127	55379333	-	rrnAC2709	-	hypothetical protein
2392	 58.41	-1	2412445..2413086	-	213	55379334	gbp3	rrnAC2710	-	GTP-binding proteinlike
2393	 57.52	-1	2414031..2415605	+	524	55379335	cdc6d	rrnAC2711	-	cell division control protein 6-like
2394	 61.67	0	2415675..2416514	-	279	55379336	sec11a	rrnAC2712	-	signal sequence peptidase
2395	 61.18	0	2416457..2417167	-	236	55379337	sec11b	rrnAC2713	-	signal sequence peptidase
2396	 63.44	0	2417646..2418824	+	392	55379338	polA1	rrnAC2714	-	DNA polymerase II small subunit
2397	 64.97	0	2419221..2420519	+	432	55379339	cysD	rrnAC2716	-	O-acetylhomoserine (thiol)-lyase
2398	 63.82	0	2420803..2421435	-	210	55379340	serB1	rrnAC2717	-	phosphoserine phosphatase
2399	 62.71	0	2421530..2422009	+	159	55379341	-	rrnAC2718	-	hypothetical protein
2400	 64.39	0	2422067..2424220	-	717	55379342	rad3b	rrnAC2719	-	helicase
2401	 65.60	0	2424321..2425073	+	250	55379343	-	rrnAC2720	-	hypothetical protein
2402	 59.47	0	2425052..2426023	-	323	55379344	cat	rrnAC2721	-	cation efflux protein
2403	 61.47	0	2426042..2426599	+	185	55379345	yhcR3	rrnAC2722	-	phosphoesterase
2404	 65.80	0	2426666..2427355	-	229	55379346	-	rrnAC2723	-	ArsR family regulatory protein
2405	 50.00	-2	2427509..2427634	+	41	55379347	-	rrnAC2724	-	hypothetical protein
2406	 59.89	0	2427678..2428769	+	363	55379348	pepB3	rrnAC2726	-	aminopeptidase
2407	 65.31	0	2428957..2431311	-	784	55379349	htr	rrnAC2728	-	HAMP/MCP domain-containing signal transducer
2408	 61.87	0	2431581..2431955	+	124	55379350	-	rrnAC2729	-	hypothetical protein
2409	 58.53	-1	2431959..2432474	-	171	55379351	-	rrnAC2730	-	hypothetical protein
2410	 58.87	0	2432540..2432911	+	123	55379352	-	rrnAC2731	-	hypothetical protein
2411	 63.45	0	2432903..2433742	-	279	55379353	-	rrnAC2732	-	hypothetical protein
2412	 62.20	0	2433844..2434872	-	342	55379354	-	rrnAC2733	-	hypothetical protein
2413	 62.11	0	2434929..2435498	+	189	55379355	-	rrnAC2734	-	hypothetical protein
2414	 64.85	0	2435543..2436640	+	365	55379356	-	rrnAC2735	-	hypothetical protein
2415	 64.31	0	2436640..2436936	+	98	55379357	-	rrnAC2736	-	hypothetical protein
2416	 63.36	0	2437506..2437868	-	120	55379358	glbN	rrnAC2737	-	cyanoglobin
2417	 66.53	0	2437994..2439442	-	482	55379359	-	rrnAC2739	-	hypothetical protein
2418	 62.03	0	2439588..2440040	+	150	55379360	-	rrnAC2740	-	TRAM domain-containing protein
2419	 65.39	0	2440104..2440886	+	260	55379361	ywfD2	rrnAC2741	-	glucose dehydrogenase
2420	 66.57	0	2440908..2441903	-	331	55379362	manC	rrnAC2742	-	mannose-1-phosphate guanylyltransferase
2421	 63.16	0	2441986..2442270	-	94	55379363	-	rrnAC2743	-	hypothetical protein
2422	 62.54	0	2442443..2443387	+	314	55379364	-	rrnAC2744	-	replication factor A
2423	 64.88	0	2443388..2444002	+	204	55379365	-	rrnAC2745	-	hypothetical protein
2424	 64.10	0	2444049..2444477	-	142	55379367	-	rrnAC2746	-	hypothetical protein
2425	 55.50	-1	2444464..2445045	+	193	55379366	-	rrnAC2748	-	CopG family protein
2426	 56.99	-1	2445037..2445222	-	61	55379368	-	rrnAC2749	-	putative helicase
2427	 47.95	-2	2445591..2445761	-	56	55379369	-	rrnAC2750	-	hypothetical protein
2428	 62.78	0	2445841..2446689	+	282	55379370	-	rrnAC2751	-	hypothetical protein
2429	 61.65	0	2446733..2447011	+	92	55379371	-	rrnAC2752	-	hypothetical protein
2430	 65.50	0	2447062..2447748	+	228	55379372	prt	rrnAC2753	-	phosphoribosyltransferase
2431	 63.09	0	2447752..2449008	-	418	55379374	-	rrnAC2755	-	hypothetical protein
2432	 65.95	0	2449007..2449423	+	138	55379373	-	rrnAC2754	-	hypothetical protein
2433	 63.22	0	2449984..2451753	+	589	55379375	rad24a	rrnAC2756	-	rad24a/uvrB domain-containing protein
2434	 64.29	0	2451833..2454022	+	729	55379376	-	rrnAC2757	-	hypothetical protein
2435	 59.30	0	2454060..2454317	-	85	55379377	-	rrnAC2758	-	hypothetical protein
2436	 62.29	0	2454376..2456250	+	624	55379378	nso	rrnAC2759	-	sodium/sulfate symporter family transporter
2437	 63.71	0	2456601..2458931	-	776	55379379	htr6	rrnAC2760	-	MCP domain-containing signal transducer
2438	 62.92	0	2458931..2459890	-	319	55379380	tmpC	rrnAC2761	-	membrane lipoprotein tmpC precursor
2439	 58.87	0	2460230..2463757	+	1175	55379381	mcm2	rrnAC2762	-	cell division control protein 21
2440	 64.47	0	2463759..2464031	+	90	55379382	-	rrnAC2764	-	hypothetical protein
2441	 69.50	+1	2464704..2465339	+	211	55379383	-	rrnAC2765	-	hypothetical protein
2442	 68.62	+1	2465372..2466139	+	255	55379384	-	rrnAC2766	-	hypothetical protein
2443	 67.64	+1	2466136..2466852	+	238	55379385	minD4	rrnAC2768	-	cell division inhibitor
2444	 66.55	0	2466831..2467691	-	286	55379386	tfbI	rrnAC2769	-	transcription initiation factor IIB
2445	 68.08	+1	2467863..2468357	+	164	55379387	-	rrnAC2770	-	hypothetical protein
2446	 63.20	0	2468399..2470015	+	538	55379388	-	rrnAC2772	-	hypothetical protein
2447	 66.15	0	2470018..2470602	-	194	55379389	ssuE2	rrnAC2773	-	NADPH-dependent FMN reductase
2448	 67.37	+1	2471140..2471709	+	189	55379390	-	rrnAC2775	-	hypothetical protein
2449	 66.51	0	2471755..2473014	-	419	55379391	matE2	rrnAC2776	-	multi anti extrusion drug/sodium antiporters
2450	 60.97	0	2473239..2473835	-	198	55379392	-	rrnAC2777	-	DNA binding protein putative transcriptional regulator
2451	 57.30	-1	2473976..2474434	-	152	55379393	asnC1	rrnAC2779	-	AsnC family transcriptional regulator
2452	 61.68	0	2474474..2475916	+	480	55379394	glnA	rrnAC2780	-	glutamine synthetase
2453	 67.65	+1	2475929..2476639	-	236	55379395	pap2a	rrnAC2781	-	glucose-6-phosphatase
2454	 66.67	0	2476819..2477958	-	379	55379396	rbn	rrnAC2782	-	ribonuclease BN
2455	 66.90	+1	2478125..2479420	-	431	55379397	dip2	rrnAC2783	-	DNA damage-inducible protein
2456	 63.28	0	2480658..2480834	+	58	55379398	-	rrnAC2785	-	transcription regulator
2457	 63.75	0	2480848..2481258	-	136	55379399	-	rrnAC2786	-	hypothetical protein
2458	 60.98	0	2481255..2481764	-	169	55379400	-	rrnAC2787	-	hypothetical protein
2459	 66.85	+1	2481818..2482921	-	367	55379401	trm1	rrnAC2788	-	N(2),N(2)-dimethylguanosine tRNA methyltransferase
2460	 66.19	0	2483211..2484893	-	560	55379402	htlD25	rrnAC2789	-	HTR-like protein
2461	 60.73	0	2484890..2485411	-	173	55379403	-	rrnAC2791	-	hypothetical protein
2462	 66.26	0	2485573..2486307	-	244	55379404	-	rrnAC2792	-	hypothetical protein
2463	 67.02	+1	2486304..2487149	-	281	55379405	yusZ3	rrnAC2793	-	oxidoreductase
2464	 65.52	0	2487173..2487871	-	232	55379406	hisH	rrnAC2794	-	imidazole glycerol phosphate synthase subunit HisH
2465	 54.10	-2	2488042..2488407	+	121	55379407	-	rrnAC2795	-	hypothetical protein
2466	 68.03	+1	2488433..2489020	-	195	55379408	udg3	rrnAC2796	-	uracil DNA glycosylase superfamily protein
2467	 62.16	0	2489097..2489540	-	147	55379409	ern3	rrnAC2797	-	endoribonuclease L-PSP
2468	 68.45	+1	2489767..2490159	-	130	55379410	-	rrnAC2798	-	hypothetical protein
2469	 54.30	-2	2490315..2490500	-	61	55379411	-	rrnAC2799	-	hypothetical protein
2470	 67.38	+1	2490573..2491271	+	232	55379412	fprA	rrnAC2800	-	flavoprotein
2471	 67.66	+1	2491322..2492227	+	301	55379413	-	rrnAC2801	-	hypothetical protein
2472	 61.33	0	2492278..2492427	-	49	55379414	rpl40e	rrnAC2802	-	50S ribosomal protein L40e
2473	 64.94	0	2492542..2493639	+	365	55379415	-	rrnAC2803	-	hypothetical protein
2474	 66.22	0	2493809..2494255	-	148	55379416	-	rrnAC2804	-	hypothetical protein
2475	 65.53	0	2494598..2496094	+	498	55379417	hyrA2	rrnAC2805	-	monooxygenase
2476	 62.72	0	2496244..2496471	+	75	55379418	-	rrnAC2806	-	hypothetical protein
2477	 69.20	+1	2496498..2497208	-	236	55379419	-	rrnAC2807	-	hypothetical protein
2478	 64.71	0	2497320..2498702	-	460	55379420	serS	rrnAC2808	-	seryl-tRNA synthetase
2479	 67.79	+1	2498784..2499227	-	147	55379421	usp21	rrnAC2809	-	universal stress protein
2480	 63.94	0	2499254..2500243	+	329	55379422	-	rrnAC2810	-	hypothetical protein
2481	 62.68	0	2501132..2502259	+	375	55379423	mthK	rrnAC2811	-	potassium channel related protein
62.75	MEAN

4.09	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.