IslandPathversion 1.0

IslandPath Analysis: Haloarcula marismortui ATCC 43049



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 62.75 STD DEV: 4.09
Haloarcula marismortui ATCC 43049 chromosome I, complete sequence - 1..3131724
3131 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2316	 69.77	+1	2325486..2325968	+	160	55379258	-	rrnAC2614	-	hypothetical protein
2317	 64.58	0	2326039..2327382	-	447	55379259	ark3	rrnAC2616	-	adaptive-response sensory-kinase
2318	 65.86	0	2327382..2328992	-	536	55379260	htr	rrnAC2618	-	MCP domain-containing signal transducer
2319	 63.28	0	2329457..2330785	+	442	55379261	amt	rrnAC2619	-	ammonium transporter
2320	 60.93	0	2330778..2331143	+	121	55379262	glnB	rrnAC2621	-	nitrogen regulatory protein P-II
2321	 62.53	0	2331153..2331611	+	152	55379263	asnC4	rrnAC2622	-	AsnC family transcriptional regulator
2322	 59.38	0	2331820..2332464	+	214	55379264	cheA2	rrnAC2623	-	CHEA histidine kinase
2323	 64.31	0	2332636..2333991	+	451	55379265	-	rrnAC2624	-	ABC transporter substrate-binding protein
2324	 62.82	0	2334254..2336020	-	588	55379266	nirA1	rrnAC2625	-	ferredoxin-nitrite reductase
2325	 62.89	0	2336449..2337771	-	440	55379267	-	rrnAC2626	-	putative transporter
2326	 68.71	+1	2338163..2340268	-	701	55379268	narB	rrnAC2627	-	nitrate reductase
2327	 64.28	0	2340446..2341783	+	445	55379269	hemL	rrnAC2628	-	glutamate-1-semialdehyde 21-aminomutase
2328	 69.79	+1	2341725..2342588	+	287	55379270	-	rrnAC2629	-	hypothetical protein
2329	 65.46	0	2342563..2343555	+	330	55379271	prsA	rrnAC2630	-	ribose-phosphate pyrophosphokinase
2330	 62.93	0	2343728..2345227	+	499	55379272	aldY1	rrnAC2631	-	aldehyde dehydrogenase
2331	 59.79	0	2345364..2346773	+	469	55379273	-	rrnAC2632	-	sodium symporter transmembrane region
2332	 56.64	-1	2346819..2347706	-	295	55379274	htr	rrnAC2633	-	MCP domain-containing signal transducer
2333	 64.84	0	2348487..2351711	-	1074	55379275	ileS	rrnAC2634	-	isoleucyl-tRNA synthetase
2334	 67.50	+1	2351960..2352679	+	239	55379276	udg1	rrnAC2636	-	uracil DNA glycosylase superfamily protein
2335	 64.57	0	2352714..2353142	+	142	55379277	hit2	rrnAC2638	-	histidine triad protein
2336	 68.18	+1	2353185..2353913	+	242	55379278	minD5	rrnAC2639	-	cell division inhibitor
2337	 64.05	0	2353910..2354827	-	305	55379279	-	rrnAC2641	-	hypothetical protein
2338	 59.76	0	2355174..2355419	+	81	55379280	-	rrnAC2642	-	hypothetical protein
2339	 63.69	0	2355967..2356134	-	55	55379281	-	rrnAC2643	-	hypothetical protein
2340	 62.46	0	2356195..2356479	-	94	55379282	-	rrnAC2644	-	hypothetical protein
2341	 65.90	0	2356479..2357915	-	478	55379283	comA	rrnAC2645	-	competence-like protein
2342	 66.38	0	2358014..2358718	-	234	55379284	-	rrnAC2647	-	hypothetical protein
2343	 68.22	+1	2359033..2359482	+	149	55379285	nthB	rrnAC2648	-	endonuclease III
2344	 65.55	0	2359483..2362161	-	892	55379286	leuS	rrnAC2650	-	leucyl-tRNA synthetase
2345	 64.69	0	2362651..2363715	-	354	55379287	rbsC	rrnAC2651	-	ribose ABC transporter permease
2346	 64.56	0	2363708..2364988	-	426	55379288	rbsC-4	rrnAC2653	-	sugar ABC transporter permease protein
2347	 64.29	0	2364985..2365614	-	209	55379289	rbsA-2	rrnAC2654	-	sugar ABC transporter ATP binding protein
2348	 61.19	0	2365648..2366541	-	297	55379290	rbsA	rrnAC2655	-	sugar ABC transporter ATP binding protein
2349	 62.77	0	2366708..2367889	-	393	55379291	yufN	rrnAC2656	-	ABC transporter
2350	 67.14	+1	2368170..2369231	+	353	55379292	phoT2	rrnAC2657	-	sodium-dependent phosphate transporter
2351	 66.90	+1	2369258..2369689	-	143	55379293	usp20	rrnAC2658	-	universal stress protein
2352	 68.64	+1	2370106..2370714	+	202	55379294	-	rrnAC2659	-	IMP cyclohydrolase
2353	 66.52	0	2370796..2371494	+	232	55379295	rad24	rrnAC2661	-	DNA repair protein
2354	 61.15	0	2371825..2372241	+	138	55379296	fer	rrnAC2662	-	ferredoxin
2355	 63.78	0	2372256..2373431	-	391	55379297	lysC	rrnAC2663	-	aspartate kinase
2356	 63.91	0	2373633..2374031	+	132	55379298	-	rrnAC2664	-	hypothetical protein
2357	 68.51	+1	2374038..2375012	-	324	55379299	-	rrnAC2665	-	hypothetical protein
2358	 67.56	+1	2375009..2375566	-	185	55379300	-	rrnAC2666	-	hypothetical protein
2359	 66.45	0	2375908..2377299	-	463	55379301	thrC3	rrnAC2667	-	threonine synthase
2360	 60.77	0	2377365..2377754	-	129	55379302	-	rrnAC2669	-	putative DNA binding protein
2361	 56.95	-1	2378141..2379118	+	325	55379303	ort	rrnAC2670	-	orotate phosphoribosyltransferase
2362	 65.05	0	2379190..2379933	+	247	55379304	inb	rrnAC2671	-	oxidoreductase-like
2363	 65.77	0	2380187..2381083	-	298	55379305	arcB	rrnAC2672	-	ornithine carbamoyltransferase
2364	 66.48	0	2381085..2382146	-	353	55379306	gltCP	rrnAC2674	-	acetyl-lysine deacetylase
2365	 63.74	0	2382143..2383270	-	375	55379307	argD	rrnAC2675	-	acetylornithine aminotransferase
2366	 65.51	0	2383267..2384127	-	286	55379308	argB2	rrnAC2676	-	acetylglutamate kinase
2367	 67.24	+1	2384146..2385183	-	345	55379309	argC	rrnAC2678	-	N-acetyl-gamma-glutamyl-phosphate reductase
2368	 63.40	0	2385180..2386160	-	326	55379310	rimK	rrnAC2679	-	ribosomal protein S6 modification protein
2369	 62.42	0	2386245..2386409	-	54	55379311	-	rrnAC2680	-	hypothetical protein
2370	 70.27	+1	2386575..2388074	-	499	55379312	argH	rrnAC2681	-	argininosuccinate lyase
2371	 64.13	0	2388079..2389341	-	420	55379313	argG	rrnAC2683	-	argininosuccinate synthase
2372	 66.41	0	2389742..2390527	-	261	55379314	-	rrnAC2684	-	hypothetical protein
2373	 65.57	0	2390665..2391759	-	364	55379315	-	rrnAC2685	-	hypothetical protein
2374	 58.20	-1	2391918..2392106	+	62	55379316	-	rrnAC2686	-	hypothetical protein
2375	 67.24	+1	2392483..2392656	+	57	55379317	-	rrnAC2688	-	hypothetical protein
2376	 63.83	0	2392846..2393268	+	140	55379318	-	rrnAC2689	-	hypothetical protein
2377	 65.54	0	2393270..2397457	+	1395	55379319	polA2	rrnAC2691	-	DNA polymerase II large subunit
2378	 63.72	0	2397626..2399692	+	688	55379320	-	rrnAC2692	-	oxygen and light sensing his kinase
2379	 64.85	0	2399685..2400731	+	348	55379321	-	rrnAC2694	-	hypothetical protein
2380	 63.89	0	2400789..2401004	+	71	55379322	-	rrnAC2695	-	hypothetical protein
2381	 64.52	0	2401037..2402623	-	528	55379323	serA1	rrnAC2696	-	D-3-phosphoglycerate dehydrogenase
2382	 55.40	-1	2402769..2402981	-	70	55379324	-	rrnAC2698	-	hypothetical protein
2383	 62.41	0	2403286..2404155	+	289	55379325	-	rrnAC2699	-	putative inosine monophosphate dehydrogenase
2384	 65.31	0	2404152..2405996	+	614	55379326	glyS	rrnAC2701	-	glycyl-tRNA synthetase
2385	 67.33	+1	2405997..2406596	+	199	55379327	-	rrnAC2702	-	hypothetical protein
2386	 65.22	0	2406663..2409221	+	852	55379328	eif4A	rrnAC2704	-	Hef nuclease
2387	 66.26	0	2409218..2409946	-	242	55379329	-	rrnAC2705	-	hypothetical protein
2388	 64.04	0	2410074..2410988	+	304	55379330	mdh	rrnAC2706	-	malate dehydrogenase
2389	 57.14	-1	2411112..2411237	-	41	55379331	-	rrnAC2707	-	hypothetical protein
2390	 64.92	0	2411371..2412057	-	228	55379332	-	rrnAC2708	-	hypothetical protein
2391	 59.38	0	2412057..2412440	-	127	55379333	-	rrnAC2709	-	hypothetical protein
2392	 58.41	-1	2412445..2413086	-	213	55379334	gbp3	rrnAC2710	-	GTP-binding proteinlike
2393	 57.52	-1	2414031..2415605	+	524	55379335	cdc6d	rrnAC2711	-	cell division control protein 6-like
2394	 61.67	0	2415675..2416514	-	279	55379336	sec11a	rrnAC2712	-	signal sequence peptidase
2395	 61.18	0	2416457..2417167	-	236	55379337	sec11b	rrnAC2713	-	signal sequence peptidase
2396	 63.44	0	2417646..2418824	+	392	55379338	polA1	rrnAC2714	-	DNA polymerase II small subunit
2397	 64.97	0	2419221..2420519	+	432	55379339	cysD	rrnAC2716	-	O-acetylhomoserine (thiol)-lyase
2398	 63.82	0	2420803..2421435	-	210	55379340	serB1	rrnAC2717	-	phosphoserine phosphatase
2399	 62.71	0	2421530..2422009	+	159	55379341	-	rrnAC2718	-	hypothetical protein
2400	 64.39	0	2422067..2424220	-	717	55379342	rad3b	rrnAC2719	-	helicase
2401	 65.60	0	2424321..2425073	+	250	55379343	-	rrnAC2720	-	hypothetical protein
2402	 59.47	0	2425052..2426023	-	323	55379344	cat	rrnAC2721	-	cation efflux protein
2403	 61.47	0	2426042..2426599	+	185	55379345	yhcR3	rrnAC2722	-	phosphoesterase
2404	 65.80	0	2426666..2427355	-	229	55379346	-	rrnAC2723	-	ArsR family regulatory protein
2405	 50.00	-2	2427509..2427634	+	41	55379347	-	rrnAC2724	-	hypothetical protein
2406	 59.89	0	2427678..2428769	+	363	55379348	pepB3	rrnAC2726	-	aminopeptidase
2407	 65.31	0	2428957..2431311	-	784	55379349	htr	rrnAC2728	-	HAMP/MCP domain-containing signal transducer
2408	 61.87	0	2431581..2431955	+	124	55379350	-	rrnAC2729	-	hypothetical protein
2409	 58.53	-1	2431959..2432474	-	171	55379351	-	rrnAC2730	-	hypothetical protein
2410	 58.87	0	2432540..2432911	+	123	55379352	-	rrnAC2731	-	hypothetical protein
2411	 63.45	0	2432903..2433742	-	279	55379353	-	rrnAC2732	-	hypothetical protein
2412	 62.20	0	2433844..2434872	-	342	55379354	-	rrnAC2733	-	hypothetical protein
2413	 62.11	0	2434929..2435498	+	189	55379355	-	rrnAC2734	-	hypothetical protein
2414	 64.85	0	2435543..2436640	+	365	55379356	-	rrnAC2735	-	hypothetical protein
2415	 64.31	0	2436640..2436936	+	98	55379357	-	rrnAC2736	-	hypothetical protein
62.75	MEAN

4.09	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.