IslandPathversion 1.0

IslandPath Analysis: Haloarcula marismortui ATCC 43049



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 62.75 STD DEV: 4.09
Haloarcula marismortui ATCC 43049 chromosome I, complete sequence - 1..3131724
3131 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2254	 59.93	0	2269421..2269702	+	93	55379196	-	rrnAC2539	-	hypothetical protein
2255	 61.86	0	2269704..2270015	+	103	55379197	-	rrnAC2541	-	hypothetical protein
2256	 69.11	+1	2270094..2270543	+	149	55379198	-	rrnAC2542	-	hypothetical protein
2257	 61.69	0	2270544..2270744	-	66	55379199	-	rrnAC2543	-	hypothetical protein
2258	 65.48	0	2270807..2271313	-	168	55379200	-	rrnAC2544	-	hypothetical protein
2259	 60.96	0	2271528..2272385	+	285	55379201	-	rrnAC2546	-	hypothetical protein
2260	 62.53	0	2272395..2273651	-	418	55379202	-	rrnAC2547	-	hypothetical protein
2261	 65.28	0	2273773..2273916	-	47	55379203	-	rrnAC2549	-	hypothetical protein
2262	 65.91	0	2273965..2276205	+	746	55379204	mutL	rrnAC2550	-	DNA mismatch repair protein mutL
2263	 64.55	0	2276286..2277230	+	314	55379205	kdgK	rrnAC2551	-	2-keto-3-deoxygluconate kinase
2264	 66.57	0	2277451..2278536	+	361	55379206	gcvT4	rrnAC2552	-	aminomethyltransferase
2265	 69.05	+1	2279209..2279544	-	111	55379207	-	rrnAC2553	-	2Fe-2S iron-sulfur cluster binding domain-containing protein
2266	 62.90	0	2279544..2280047	-	167	55379208	-	rrnAC2554	-	hypothetical protein
2267	 64.63	0	2280123..2280710	-	195	55379209	hisB	rrnAC2555	-	imidazoleglycerol-phosphate dehydratase
2268	 68.50	+1	2280769..2281530	-	253	55379210	pca	rrnAC2557	-	3-oxoadipate enol-lactone hydrolase/4-carboxymuconolactone decarboxylase
2269	 65.35	0	2282033..2283475	+	480	55379211	nhaC6	rrnAC2558	-	Na+/H+ antiporter
2270	 61.98	0	2283494..2283685	-	63	55379212	-	rrnAC2559	-	hypothetical protein
2271	 65.05	0	2284035..2286818	-	927	55379213	alaS	rrnAC2561	-	alanyl-tRNA synthetase
2272	 62.52	0	2286930..2287967	-	345	55379214	rfc	rrnAC2565	-	replication factor C small subunit
2273	 66.17	0	2287987..2288187	+	66	55379215	-	rrnAC2563	-	hypothetical protein
2274	 66.39	0	2288237..2288593	+	118	55379216	-	rrnAC2566	-	acetyltransferase
2275	 63.58	0	2288608..2289060	-	150	55379217	-	rrnAC2567	-	hypothetical protein
2276	 67.50	+1	2289085..2290524	-	479	55379218	pmm	rrnAC2568	-	phosphoglucomutase/phosphomannomutase
2277	 57.54	-1	2290575..2290859	-	94	55379219	-	rrnAC2569	-	putative nuclease
2278	 67.96	+1	2291139..2291912	-	257	55379220	purE-2	rrnAC2570	-	NCAIR mutase (PurE)-related protein
2279	 59.52	0	2292193..2292360	+	55	55379221	-	rrnAC2571	-	hypothetical protein
2280	 66.08	0	2292409..2293095	-	228	55379222	rpiA	rrnAC2572	-	ribose 5-phosphate isomerase A
2281	 69.48	+1	2293413..2294765	+	450	55379223	manB1	rrnAC2574	-	phosphoglucomutase/phosphomannomutase
2282	 61.88	0	2295238..2295822	-	194	55379224	-	rrnAC2575	-	hypothetical protein
2283	 62.79	0	2295869..2296306	-	145	55379225	-	rrnAC2576	-	hypothetical protein
2284	 61.80	0	2296571..2297248	-	225	55379226	upp	rrnAC2577	-	uracil phosphoribosyltransferase
2285	 63.29	0	2297289..2299982	-	897	55379227	-	rrnAC2578	-	hypothetical protein
2286	 59.51	0	2299979..2300467	-	162	55379228	-	rrnAC2579	-	hypothetical protein
2287	 64.16	0	2300529..2301566	-	345	55379229	imp	rrnAC2580	-	immunogenic protein
2288	 64.65	0	2301768..2302460	-	230	55379230	-	rrnAC2581	-	hypothetical protein
2289	 61.84	0	2302548..2303417	+	289	55379231	-	rrnAC2582	-	hypothetical protein
2290	 63.12	0	2303500..2303781	-	93	55379232	-	rrnAC2584	-	hypothetical protein
2291	 67.98	+1	2304043..2305107	+	354	55379233	-	rrnAC2586	-	phosphate transporter family protein
2292	 63.89	0	2305113..2305328	-	71	55379234	-	rrnAC2587	-	hypothetical protein
2293	 62.72	0	2305505..2306188	+	227	55379235	-	rrnAC2588	-	hypothetical protein
2294	 67.50	+1	2306185..2306784	+	199	55379236	-	rrnAC2589	-	hypothetical protein
2295	 63.98	0	2306827..2308722	-	631	55379237	cstA	rrnAC2590	-	carbon starvation protein CstA
2296	 65.50	0	2308896..2310176	-	426	55379238	arsA3	rrnAC2592	-	arsenical pump-driving ATPase
2297	 65.75	0	2310312..2311613	+	433	55379239	cobW1	rrnAC2593	-	cobalamin synthesis protein/P47K
2298	 64.25	0	2311610..2311816	-	68	55379240	-	rrnAC2594	-	hypothetical protein
2299	 67.14	+1	2311917..2312342	-	141	55379241	-	rrnAC2595	-	hypothetical protein
2300	 65.71	0	2312361..2312675	-	104	55379243	-	rrnAC2596	-	hypothetical protein
2301	 63.03	0	2312674..2313003	+	109	55379242	-	rrnAC2597	-	hypothetical protein
2302	 60.22	0	2313058..2313429	-	123	55379244	-	rrnAC2598	-	hypothetical protein
2303	 61.20	0	2313480..2314907	-	475	55379245	-	rrnAC2600	-	hypothetical protein
2304	 65.59	0	2314965..2315243	+	92	55379246	gst2	rrnAC2599	-	glutathione S-transferase
2305	 63.14	0	2315243..2315752	+	169	55379247	prxS	rrnAC2601	-	AhpC/TSA family protein
2306	 67.93	+1	2315707..2316339	+	210	55379248	yrdC	rrnAC2602	-	DNA binding protein
2307	 67.27	+1	2316374..2317036	-	220	55379249	-	rrnAC2603	-	hypothetical protein
2308	 62.32	0	2317153..2317773	-	206	55379250	-	rrnAC2604	-	hypothetical protein
2309	 63.64	0	2317918..2319999	+	693	55379251	hdrD	rrnAC2605	-	heterodisulfide reductase
2310	 63.60	0	2320001..2320750	-	249	55379252	mthK2	rrnAC2606	-	putative potassium channel protein
2311	 62.32	0	2320823..2320960	-	45	55379253	-	rrnAC2607	-	hypothetical protein
2312	 66.80	0	2321140..2321868	+	242	55379254	dip3	rrnAC2608	-	competence-damage protein CinA-like
2313	 66.06	0	2321915..2322895	+	326	55379255	hemB	rrnAC2610	-	delta-aminolevulinic acid dehydratase
2314	 69.38	+1	2322975..2323712	+	245	55379256	-	rrnAC2611	-	hypothetical protein
2315	 71.36	+2	2324083..2325489	+	468	55379257	-	rrnAC2612	-	hypothetical protein
2316	 69.77	+1	2325486..2325968	+	160	55379258	-	rrnAC2614	-	hypothetical protein
2317	 64.58	0	2326039..2327382	-	447	55379259	ark3	rrnAC2616	-	adaptive-response sensory-kinase
2318	 65.86	0	2327382..2328992	-	536	55379260	htr	rrnAC2618	-	MCP domain-containing signal transducer
2319	 63.28	0	2329457..2330785	+	442	55379261	amt	rrnAC2619	-	ammonium transporter
2320	 60.93	0	2330778..2331143	+	121	55379262	glnB	rrnAC2621	-	nitrogen regulatory protein P-II
2321	 62.53	0	2331153..2331611	+	152	55379263	asnC4	rrnAC2622	-	AsnC family transcriptional regulator
2322	 59.38	0	2331820..2332464	+	214	55379264	cheA2	rrnAC2623	-	CHEA histidine kinase
2323	 64.31	0	2332636..2333991	+	451	55379265	-	rrnAC2624	-	ABC transporter substrate-binding protein
2324	 62.82	0	2334254..2336020	-	588	55379266	nirA1	rrnAC2625	-	ferredoxin-nitrite reductase
2325	 62.89	0	2336449..2337771	-	440	55379267	-	rrnAC2626	-	putative transporter
2326	 68.71	+1	2338163..2340268	-	701	55379268	narB	rrnAC2627	-	nitrate reductase
2327	 64.28	0	2340446..2341783	+	445	55379269	hemL	rrnAC2628	-	glutamate-1-semialdehyde 21-aminomutase
2328	 69.79	+1	2341725..2342588	+	287	55379270	-	rrnAC2629	-	hypothetical protein
2329	 65.46	0	2342563..2343555	+	330	55379271	prsA	rrnAC2630	-	ribose-phosphate pyrophosphokinase
2330	 62.93	0	2343728..2345227	+	499	55379272	aldY1	rrnAC2631	-	aldehyde dehydrogenase
2331	 59.79	0	2345364..2346773	+	469	55379273	-	rrnAC2632	-	sodium symporter transmembrane region
2332	 56.64	-1	2346819..2347706	-	295	55379274	htr	rrnAC2633	-	MCP domain-containing signal transducer
2333	 64.84	0	2348487..2351711	-	1074	55379275	ileS	rrnAC2634	-	isoleucyl-tRNA synthetase
2334	 67.50	+1	2351960..2352679	+	239	55379276	udg1	rrnAC2636	-	uracil DNA glycosylase superfamily protein
2335	 64.57	0	2352714..2353142	+	142	55379277	hit2	rrnAC2638	-	histidine triad protein
2336	 68.18	+1	2353185..2353913	+	242	55379278	minD5	rrnAC2639	-	cell division inhibitor
2337	 64.05	0	2353910..2354827	-	305	55379279	-	rrnAC2641	-	hypothetical protein
2338	 59.76	0	2355174..2355419	+	81	55379280	-	rrnAC2642	-	hypothetical protein
2339	 63.69	0	2355967..2356134	-	55	55379281	-	rrnAC2643	-	hypothetical protein
2340	 62.46	0	2356195..2356479	-	94	55379282	-	rrnAC2644	-	hypothetical protein
2341	 65.90	0	2356479..2357915	-	478	55379283	comA	rrnAC2645	-	competence-like protein
2342	 66.38	0	2358014..2358718	-	234	55379284	-	rrnAC2647	-	hypothetical protein
2343	 68.22	+1	2359033..2359482	+	149	55379285	nthB	rrnAC2648	-	endonuclease III
2344	 65.55	0	2359483..2362161	-	892	55379286	leuS	rrnAC2650	-	leucyl-tRNA synthetase
2345	 64.69	0	2362651..2363715	-	354	55379287	rbsC	rrnAC2651	-	ribose ABC transporter permease
2346	 64.56	0	2363708..2364988	-	426	55379288	rbsC-4	rrnAC2653	-	sugar ABC transporter permease protein
2347	 64.29	0	2364985..2365614	-	209	55379289	rbsA-2	rrnAC2654	-	sugar ABC transporter ATP binding protein
2348	 61.19	0	2365648..2366541	-	297	55379290	rbsA	rrnAC2655	-	sugar ABC transporter ATP binding protein
2349	 62.77	0	2366708..2367889	-	393	55379291	yufN	rrnAC2656	-	ABC transporter
2350	 67.14	+1	2368170..2369231	+	353	55379292	phoT2	rrnAC2657	-	sodium-dependent phosphate transporter
2351	 66.90	+1	2369258..2369689	-	143	55379293	usp20	rrnAC2658	-	universal stress protein
2352	 68.64	+1	2370106..2370714	+	202	55379294	-	rrnAC2659	-	IMP cyclohydrolase
2353	 66.52	0	2370796..2371494	+	232	55379295	rad24	rrnAC2661	-	DNA repair protein
62.75	MEAN

4.09	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.