IslandPathversion 1.0

IslandPath Analysis: Haloarcula marismortui ATCC 43049



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 62.75 STD DEV: 4.09
Haloarcula marismortui ATCC 43049 chromosome I, complete sequence - 1..3131724
3131 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2223	 63.69	0	2235888..2237366	-	492	55379165	-	rrnAC2505	-	putative polysaccharide biosynthesis protein
2224	 63.18	0	2237626..2237883	-	85	55379166	-	rrnAC2506	-	hypothetical protein
2225	 64.29	0	2237929..2238138	-	69	55379167	-	rrnAC2507	-	hypothetical protein
2226	 63.61	0	2238392..2239603	-	403	55379168	ilvA2	rrnAC2508	-	threonine dehydratase
2227	 63.00	0	2239891..2241525	+	544	55379169	trk	rrnAC2510	-	trk active potasium channel
2228	 63.79	0	2241892..2243037	-	381	55379170	citZ	rrnAC2511	-	citrate synthase II
2229	 65.52	0	2243272..2244495	+	407	55379171	pchB	rrnAC2512	-	potassium channel-related protein
2230	 65.74	0	2244502..2244717	-	71	55379172	-	rrnAC2513	-	hypothetical protein
2231	 65.10	0	2244853..2245809	+	318	55379173	-	rrnAC2514	-	hypothetical protein
2232	 66.67	0	2246063..2247133	+	356	55379174	thrC4	rrnAC2515	-	threonine synthase
2233	 62.25	0	2247130..2247333	-	67	55379175	-	rrnAC2516	-	hypothetical protein
2234	 59.42	0	2247390..2247596	-	68	55379176	-	rrnAC2517	-	hypothetical protein
2235	 66.83	0	2247856..2249076	-	406	55379177	-	rrnAC2518	-	hypothetical protein
2236	 64.09	0	2249250..2250218	+	322	55379178	-	rrnAC2519	-	hypothetical protein
2237	 57.43	-1	2250277..2250525	-	82	55379179	gstN	rrnAC2520	-	glutathione S-transferase domain-containing protein
2238	 65.94	0	2250611..2251162	-	183	55379180	pyrE1	rrnAC2521	-	orotate phosphoribosyltransferase
2239	 66.88	+1	2251249..2252628	+	459	55379181	manB3	rrnAC2522	-	phosphoglucomutase/phosphomannomutase
2240	 66.06	0	2252613..2253764	-	383	55379182	-	rrnAC2523	-	hypothetical protein
2241	 66.39	0	2253764..2254126	-	120	55379183	hisI2	rrnAC2524	-	phosphoribosyl-AMP cyclohydrolase
2242	 65.99	0	2254174..2254908	-	244	55379184	-	rrnAC2525	-	hypothetical protein
2243	 57.86	-1	2255302..2255778	-	158	55379185	fer1	rrnAC2526	-	ferredoxin
2244	 64.93	0	2255816..2257024	-	402	55379186	ylnA	rrnAC2527	-	anion permease
2245	 60.80	0	2257094..2258014	-	306	55379188	-	rrnAC2528	-	hypothetical protein
2246	 67.77	+1	2257959..2258864	+	301	55379187	hisA	rrnAC2529	-	1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase
2247	 67.00	+1	2258911..2259513	+	200	55379189	-	rrnAC2530	-	putative methytransferase
2248	 67.06	+1	2259716..2262784	+	1022	55379190	mutS4	rrnAC2532	-	DNA mismatch repair protein
2249	 62.34	0	2262859..2264799	+	646	55379191	ark1	rrnAC2533	-	adaptive-response sensory-kinase
2250	 63.91	0	2264894..2265910	+	338	55379192	trp-11	rrnAC2535	-	ABC transporter ATP-binding protein
2251	 62.65	0	2265930..2266775	+	281	55379193	-	rrnAC2536	-	hypothetical protein
2252	 56.67	-1	2266883..2267722	+	279	55379194	-	rrnAC2537	-	hypothetical protein
2253	 61.94	0	2267784..2268968	+	394	55379195	-	rrnAC2538	-	hypothetical protein
2254	 59.93	0	2269421..2269702	+	93	55379196	-	rrnAC2539	-	hypothetical protein
2255	 61.86	0	2269704..2270015	+	103	55379197	-	rrnAC2541	-	hypothetical protein
2256	 69.11	+1	2270094..2270543	+	149	55379198	-	rrnAC2542	-	hypothetical protein
2257	 61.69	0	2270544..2270744	-	66	55379199	-	rrnAC2543	-	hypothetical protein
2258	 65.48	0	2270807..2271313	-	168	55379200	-	rrnAC2544	-	hypothetical protein
2259	 60.96	0	2271528..2272385	+	285	55379201	-	rrnAC2546	-	hypothetical protein
2260	 62.53	0	2272395..2273651	-	418	55379202	-	rrnAC2547	-	hypothetical protein
2261	 65.28	0	2273773..2273916	-	47	55379203	-	rrnAC2549	-	hypothetical protein
2262	 65.91	0	2273965..2276205	+	746	55379204	mutL	rrnAC2550	-	DNA mismatch repair protein mutL
2263	 64.55	0	2276286..2277230	+	314	55379205	kdgK	rrnAC2551	-	2-keto-3-deoxygluconate kinase
2264	 66.57	0	2277451..2278536	+	361	55379206	gcvT4	rrnAC2552	-	aminomethyltransferase
2265	 69.05	+1	2279209..2279544	-	111	55379207	-	rrnAC2553	-	2Fe-2S iron-sulfur cluster binding domain-containing protein
2266	 62.90	0	2279544..2280047	-	167	55379208	-	rrnAC2554	-	hypothetical protein
2267	 64.63	0	2280123..2280710	-	195	55379209	hisB	rrnAC2555	-	imidazoleglycerol-phosphate dehydratase
2268	 68.50	+1	2280769..2281530	-	253	55379210	pca	rrnAC2557	-	3-oxoadipate enol-lactone hydrolase/4-carboxymuconolactone decarboxylase
2269	 65.35	0	2282033..2283475	+	480	55379211	nhaC6	rrnAC2558	-	Na+/H+ antiporter
2270	 61.98	0	2283494..2283685	-	63	55379212	-	rrnAC2559	-	hypothetical protein
2271	 65.05	0	2284035..2286818	-	927	55379213	alaS	rrnAC2561	-	alanyl-tRNA synthetase
2272	 62.52	0	2286930..2287967	-	345	55379214	rfc	rrnAC2565	-	replication factor C small subunit
2273	 66.17	0	2287987..2288187	+	66	55379215	-	rrnAC2563	-	hypothetical protein
2274	 66.39	0	2288237..2288593	+	118	55379216	-	rrnAC2566	-	acetyltransferase
2275	 63.58	0	2288608..2289060	-	150	55379217	-	rrnAC2567	-	hypothetical protein
2276	 67.50	+1	2289085..2290524	-	479	55379218	pmm	rrnAC2568	-	phosphoglucomutase/phosphomannomutase
2277	 57.54	-1	2290575..2290859	-	94	55379219	-	rrnAC2569	-	putative nuclease
2278	 67.96	+1	2291139..2291912	-	257	55379220	purE-2	rrnAC2570	-	NCAIR mutase (PurE)-related protein
2279	 59.52	0	2292193..2292360	+	55	55379221	-	rrnAC2571	-	hypothetical protein
2280	 66.08	0	2292409..2293095	-	228	55379222	rpiA	rrnAC2572	-	ribose 5-phosphate isomerase A
2281	 69.48	+1	2293413..2294765	+	450	55379223	manB1	rrnAC2574	-	phosphoglucomutase/phosphomannomutase
2282	 61.88	0	2295238..2295822	-	194	55379224	-	rrnAC2575	-	hypothetical protein
2283	 62.79	0	2295869..2296306	-	145	55379225	-	rrnAC2576	-	hypothetical protein
2284	 61.80	0	2296571..2297248	-	225	55379226	upp	rrnAC2577	-	uracil phosphoribosyltransferase
2285	 63.29	0	2297289..2299982	-	897	55379227	-	rrnAC2578	-	hypothetical protein
2286	 59.51	0	2299979..2300467	-	162	55379228	-	rrnAC2579	-	hypothetical protein
2287	 64.16	0	2300529..2301566	-	345	55379229	imp	rrnAC2580	-	immunogenic protein
2288	 64.65	0	2301768..2302460	-	230	55379230	-	rrnAC2581	-	hypothetical protein
2289	 61.84	0	2302548..2303417	+	289	55379231	-	rrnAC2582	-	hypothetical protein
2290	 63.12	0	2303500..2303781	-	93	55379232	-	rrnAC2584	-	hypothetical protein
2291	 67.98	+1	2304043..2305107	+	354	55379233	-	rrnAC2586	-	phosphate transporter family protein
2292	 63.89	0	2305113..2305328	-	71	55379234	-	rrnAC2587	-	hypothetical protein
2293	 62.72	0	2305505..2306188	+	227	55379235	-	rrnAC2588	-	hypothetical protein
2294	 67.50	+1	2306185..2306784	+	199	55379236	-	rrnAC2589	-	hypothetical protein
2295	 63.98	0	2306827..2308722	-	631	55379237	cstA	rrnAC2590	-	carbon starvation protein CstA
2296	 65.50	0	2308896..2310176	-	426	55379238	arsA3	rrnAC2592	-	arsenical pump-driving ATPase
2297	 65.75	0	2310312..2311613	+	433	55379239	cobW1	rrnAC2593	-	cobalamin synthesis protein/P47K
2298	 64.25	0	2311610..2311816	-	68	55379240	-	rrnAC2594	-	hypothetical protein
2299	 67.14	+1	2311917..2312342	-	141	55379241	-	rrnAC2595	-	hypothetical protein
2300	 65.71	0	2312361..2312675	-	104	55379243	-	rrnAC2596	-	hypothetical protein
2301	 63.03	0	2312674..2313003	+	109	55379242	-	rrnAC2597	-	hypothetical protein
2302	 60.22	0	2313058..2313429	-	123	55379244	-	rrnAC2598	-	hypothetical protein
2303	 61.20	0	2313480..2314907	-	475	55379245	-	rrnAC2600	-	hypothetical protein
2304	 65.59	0	2314965..2315243	+	92	55379246	gst2	rrnAC2599	-	glutathione S-transferase
2305	 63.14	0	2315243..2315752	+	169	55379247	prxS	rrnAC2601	-	AhpC/TSA family protein
2306	 67.93	+1	2315707..2316339	+	210	55379248	yrdC	rrnAC2602	-	DNA binding protein
2307	 67.27	+1	2316374..2317036	-	220	55379249	-	rrnAC2603	-	hypothetical protein
2308	 62.32	0	2317153..2317773	-	206	55379250	-	rrnAC2604	-	hypothetical protein
2309	 63.64	0	2317918..2319999	+	693	55379251	hdrD	rrnAC2605	-	heterodisulfide reductase
2310	 63.60	0	2320001..2320750	-	249	55379252	mthK2	rrnAC2606	-	putative potassium channel protein
2311	 62.32	0	2320823..2320960	-	45	55379253	-	rrnAC2607	-	hypothetical protein
2312	 66.80	0	2321140..2321868	+	242	55379254	dip3	rrnAC2608	-	competence-damage protein CinA-like
2313	 66.06	0	2321915..2322895	+	326	55379255	hemB	rrnAC2610	-	delta-aminolevulinic acid dehydratase
2314	 69.38	+1	2322975..2323712	+	245	55379256	-	rrnAC2611	-	hypothetical protein
2315	 71.36	+2	2324083..2325489	+	468	55379257	-	rrnAC2612	-	hypothetical protein
2316	 69.77	+1	2325486..2325968	+	160	55379258	-	rrnAC2614	-	hypothetical protein
2317	 64.58	0	2326039..2327382	-	447	55379259	ark3	rrnAC2616	-	adaptive-response sensory-kinase
2318	 65.86	0	2327382..2328992	-	536	55379260	htr	rrnAC2618	-	MCP domain-containing signal transducer
2319	 63.28	0	2329457..2330785	+	442	55379261	amt	rrnAC2619	-	ammonium transporter
2320	 60.93	0	2330778..2331143	+	121	55379262	glnB	rrnAC2621	-	nitrogen regulatory protein P-II
2321	 62.53	0	2331153..2331611	+	152	55379263	asnC4	rrnAC2622	-	AsnC family transcriptional regulator
2322	 59.38	0	2331820..2332464	+	214	55379264	cheA2	rrnAC2623	-	CHEA histidine kinase
62.75	MEAN

4.09	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.