IslandPathversion 1.0

IslandPath Analysis: Haloarcula marismortui ATCC 43049



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 62.75 STD DEV: 4.09
Haloarcula marismortui ATCC 43049 chromosome I, complete sequence - 1..3131724
3131 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2174	 64.97	0	2194527..2194703	-	58	55379116	-	rrnAC2452	-	hypothetical protein
2175	 65.21	0	2194869..2195963	+	364	55379117	-	rrnAC2453	-	hypothetical protein
2176	 66.89	+1	2195968..2196405	+	145	55379118	usp10	rrnAC2455	-	putative universal stress protein
2177	 66.28	0	2196433..2196951	-	172	55379119	-	rrnAC2456	-	hypothetical protein
2178	 61.07	0	2197026..2197793	-	255	55379120	-	rrnAC2457	-	hypothetical protein
2179	 60.34	0	2197856..2198203	-	115	55379121	trxA1	rrnAC2458	-	thioredoxin
2180	 64.53	0	2198281..2198841	-	186	55379122	maa	rrnAC2459	-	maltose O-acetyltransferase
2181	 64.93	0	2198883..2201009	+	708	55379123	-	rrnAC2460	-	hypothetical protein
2182	 62.60	0	2201042..2202172	+	376	55379124	ark2	rrnAC2461	-	adaptive-response sensory-kinase
2183	 68.70	+1	2202184..2202429	-	81	55379125	-	rrnAC2462	-	hypothetical protein
2184	 64.48	0	2202468..2202878	-	136	55379126	scp2	rrnAC2463	-	sterol carrier protein
2185	 65.84	0	2202996..2203718	-	240	55379127	livF-6	rrnAC2464	-	branched-chain amino acid ABC transporter ATP-binding protein
2186	 63.84	0	2203715..2204527	-	270	55379128	livG-6	rrnAC2465	-	branched-chain amino acid ABC transporter ATP-binding protein
2187	 63.87	0	2204520..2205629	-	369	55379129	livM-5	rrnAC2466	-	branched-chain amino acid ABC transporter permease protein
2188	 62.85	0	2205626..2206543	-	305	55379130	livH-6	rrnAC2468	-	branched chain amino acid transporter permease protein
2189	 61.04	0	2206574..2207995	-	473	55379131	-	rrnAC2469	-	hypothetical protein
2190	 62.76	0	2208013..2208984	+	323	55379132	prr	rrnAC2470	-	proline racemase
2191	 61.29	0	2209057..2209893	+	278	55379133	yusM	rrnAC2471	-	proline dehydrogenase
2192	 61.92	0	2209895..2210611	-	238	55379134	boa-8	rrnAC2472	-	bacterio-opsin activator
2193	 63.67	0	2210755..2212323	+	522	55379135	aldY2	rrnAC2473	-	aldehyde dehydrogenase
2194	 62.63	0	2212297..2212395	-	32	55379136	-	rrnAC2475	-	hypothetical protein
2195	 58.69	0	2212504..2212854	+	116	55379137	eif1A1	rrnAC2474	-	translation initiation factor IF-1A
2196	 64.60	0	2213250..2213831	+	193	55379138	prk2	rrnAC2476	-	protein kinase
2197	 62.29	0	2214108..2215157	+	349	55379139	htlD	rrnAC2477	-	protein kinase-like
2198	 62.66	0	2215253..2215801	+	182	55379140	-	rrnAC2479	-	putative RNA-processing protein
2199	 64.40	0	2215931..2216371	+	146	55379141	act	rrnAC2480	-	acyl-CoA thioester hydrolase
2200	 54.17	-2	2216439..2216702	-	87	55379142	-	rrnAC2481	-	hypothetical protein
2201	 56.67	-1	2216695..2216934	-	79	55379143	-	rrnAC2482	-	hypothetical protein
2202	 67.73	+1	2217708..2218364	-	218	55379144	-	rrnAC2483	-	hypothetical protein
2203	 67.26	+1	2218425..2219099	+	224	55379145	ech3	rrnAC2484	-	enoyl-CoA hydratase
2204	 63.71	0	2219138..2219914	+	258	55379146	-	rrnAC2485	-	hypothetical protein
2205	 64.51	0	2219935..2220768	-	277	55379147	nadE1	rrnAC2486	-	NH(3)-dependent NAD(+) synthetase
2206	 64.98	0	2221262..2222269	+	335	55379148	rfcC2	rrnAC2487	-	replication factor C small subunit 2
2207	 59.87	0	2222455..2222763	+	102	55379149	rps24e	rrnAC2488	-	30S ribosomal protein S24e
2208	 63.70	0	2222764..2222898	+	44	55379150	rps27AE	rrnAC2489	-	30S ribosomal protein S27ae
2209	 68.49	+1	2222908..2224554	+	548	55379151	gcp	rrnAC2490	-	O-sialoglycoprotein endopeptidase/protein kinase
2210	 59.06	0	2224770..2225045	+	91	55379152	-	rrnAC2492	-	hypothetical protein
2211	 66.52	0	2225159..2225830	+	223	55379153	ham1	rrnAC2493	-	Ham1 protein
2212	 64.49	0	2226133..2226729	+	198	55379154	yqjQ	rrnAC2494	-	short chain dehydrogenase/reductase family oxidoreductase
2213	 62.67	0	2226862..2228562	+	566	55379155	htr14	rrnAC2495	-	MCP domain-containing signal transducer
2214	 64.99	0	2228576..2229052	-	158	55379156	-	rrnAC2496	-	hypothetical protein
2215	 62.04	0	2229045..2229152	-	35	55379157	-	rrnAC2497	-	hypothetical protein
2216	 61.86	0	2229438..2230103	-	221	55379158	trkA6	rrnAC2498	-	TRK potassium uptake system protein
2217	 62.54	0	2230161..2231372	-	403	55379159	-	rrnAC2499	-	hypothetical protein
2218	 65.71	0	2231752..2232687	+	311	55379160	-	rrnAC2500	-	metallo-beta-lactamase-like
2219	 66.57	0	2232730..2233803	+	357	55379161	gfo5	rrnAC2501	-	oxidoreductase
2220	 69.12	+1	2233825..2234436	-	203	55379162	araC	rrnAC2503	-	AraC family transcriptional regulator
2221	 67.58	+1	2234545..2235423	+	292	55379163	phzC	rrnAC2502	-	phenazine biosynthesis-like protein
2222	 65.05	0	2235483..2235854	+	123	55379164	lgl	rrnAC2504	-	putative lactoyglutathione lyase
2223	 63.69	0	2235888..2237366	-	492	55379165	-	rrnAC2505	-	putative polysaccharide biosynthesis protein
2224	 63.18	0	2237626..2237883	-	85	55379166	-	rrnAC2506	-	hypothetical protein
2225	 64.29	0	2237929..2238138	-	69	55379167	-	rrnAC2507	-	hypothetical protein
2226	 63.61	0	2238392..2239603	-	403	55379168	ilvA2	rrnAC2508	-	threonine dehydratase
2227	 63.00	0	2239891..2241525	+	544	55379169	trk	rrnAC2510	-	trk active potasium channel
2228	 63.79	0	2241892..2243037	-	381	55379170	citZ	rrnAC2511	-	citrate synthase II
2229	 65.52	0	2243272..2244495	+	407	55379171	pchB	rrnAC2512	-	potassium channel-related protein
2230	 65.74	0	2244502..2244717	-	71	55379172	-	rrnAC2513	-	hypothetical protein
2231	 65.10	0	2244853..2245809	+	318	55379173	-	rrnAC2514	-	hypothetical protein
2232	 66.67	0	2246063..2247133	+	356	55379174	thrC4	rrnAC2515	-	threonine synthase
2233	 62.25	0	2247130..2247333	-	67	55379175	-	rrnAC2516	-	hypothetical protein
2234	 59.42	0	2247390..2247596	-	68	55379176	-	rrnAC2517	-	hypothetical protein
2235	 66.83	0	2247856..2249076	-	406	55379177	-	rrnAC2518	-	hypothetical protein
2236	 64.09	0	2249250..2250218	+	322	55379178	-	rrnAC2519	-	hypothetical protein
2237	 57.43	-1	2250277..2250525	-	82	55379179	gstN	rrnAC2520	-	glutathione S-transferase domain-containing protein
2238	 65.94	0	2250611..2251162	-	183	55379180	pyrE1	rrnAC2521	-	orotate phosphoribosyltransferase
2239	 66.88	+1	2251249..2252628	+	459	55379181	manB3	rrnAC2522	-	phosphoglucomutase/phosphomannomutase
2240	 66.06	0	2252613..2253764	-	383	55379182	-	rrnAC2523	-	hypothetical protein
2241	 66.39	0	2253764..2254126	-	120	55379183	hisI2	rrnAC2524	-	phosphoribosyl-AMP cyclohydrolase
2242	 65.99	0	2254174..2254908	-	244	55379184	-	rrnAC2525	-	hypothetical protein
2243	 57.86	-1	2255302..2255778	-	158	55379185	fer1	rrnAC2526	-	ferredoxin
2244	 64.93	0	2255816..2257024	-	402	55379186	ylnA	rrnAC2527	-	anion permease
2245	 60.80	0	2257094..2258014	-	306	55379188	-	rrnAC2528	-	hypothetical protein
2246	 67.77	+1	2257959..2258864	+	301	55379187	hisA	rrnAC2529	-	1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase
2247	 67.00	+1	2258911..2259513	+	200	55379189	-	rrnAC2530	-	putative methytransferase
2248	 67.06	+1	2259716..2262784	+	1022	55379190	mutS4	rrnAC2532	-	DNA mismatch repair protein
2249	 62.34	0	2262859..2264799	+	646	55379191	ark1	rrnAC2533	-	adaptive-response sensory-kinase
2250	 63.91	0	2264894..2265910	+	338	55379192	trp-11	rrnAC2535	-	ABC transporter ATP-binding protein
2251	 62.65	0	2265930..2266775	+	281	55379193	-	rrnAC2536	-	hypothetical protein
2252	 56.67	-1	2266883..2267722	+	279	55379194	-	rrnAC2537	-	hypothetical protein
2253	 61.94	0	2267784..2268968	+	394	55379195	-	rrnAC2538	-	hypothetical protein
2254	 59.93	0	2269421..2269702	+	93	55379196	-	rrnAC2539	-	hypothetical protein
2255	 61.86	0	2269704..2270015	+	103	55379197	-	rrnAC2541	-	hypothetical protein
2256	 69.11	+1	2270094..2270543	+	149	55379198	-	rrnAC2542	-	hypothetical protein
2257	 61.69	0	2270544..2270744	-	66	55379199	-	rrnAC2543	-	hypothetical protein
2258	 65.48	0	2270807..2271313	-	168	55379200	-	rrnAC2544	-	hypothetical protein
2259	 60.96	0	2271528..2272385	+	285	55379201	-	rrnAC2546	-	hypothetical protein
2260	 62.53	0	2272395..2273651	-	418	55379202	-	rrnAC2547	-	hypothetical protein
2261	 65.28	0	2273773..2273916	-	47	55379203	-	rrnAC2549	-	hypothetical protein
2262	 65.91	0	2273965..2276205	+	746	55379204	mutL	rrnAC2550	-	DNA mismatch repair protein mutL
2263	 64.55	0	2276286..2277230	+	314	55379205	kdgK	rrnAC2551	-	2-keto-3-deoxygluconate kinase
2264	 66.57	0	2277451..2278536	+	361	55379206	gcvT4	rrnAC2552	-	aminomethyltransferase
2265	 69.05	+1	2279209..2279544	-	111	55379207	-	rrnAC2553	-	2Fe-2S iron-sulfur cluster binding domain-containing protein
2266	 62.90	0	2279544..2280047	-	167	55379208	-	rrnAC2554	-	hypothetical protein
2267	 64.63	0	2280123..2280710	-	195	55379209	hisB	rrnAC2555	-	imidazoleglycerol-phosphate dehydratase
2268	 68.50	+1	2280769..2281530	-	253	55379210	pca	rrnAC2557	-	3-oxoadipate enol-lactone hydrolase/4-carboxymuconolactone decarboxylase
2269	 65.35	0	2282033..2283475	+	480	55379211	nhaC6	rrnAC2558	-	Na+/H+ antiporter
2270	 61.98	0	2283494..2283685	-	63	55379212	-	rrnAC2559	-	hypothetical protein
2271	 65.05	0	2284035..2286818	-	927	55379213	alaS	rrnAC2561	-	alanyl-tRNA synthetase
2272	 62.52	0	2286930..2287967	-	345	55379214	rfc	rrnAC2565	-	replication factor C small subunit
2273	 66.17	0	2287987..2288187	+	66	55379215	-	rrnAC2563	-	hypothetical protein
62.75	MEAN

4.09	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.