IslandPath Analysis: Haloarcula marismortui ATCC 43049



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 62.75   STD DEV: 4.09
Haloarcula marismortui ATCC 43049 chromosome I, complete sequence - 1..3131724
3131 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 66.03	0	10..957	-	315	55376943	birA	rrnAC0001	-	biotin-(acetyl-CoA carboxylase) ligase
2	 63.32	0	1019..2869	-	616	55376944	accC2	rrnAC0002	-	carbamoyl phosphate synthase L chain
3	 69.93	+1	3009..3314	-	101	55376945	-	rrnAC0003	-	hypothetical protein
4	 64.60	0	3317..4672	-	451	55376946	accA	rrnAC0004	-	acetyl-CoA carboxylase alpha subunit
5	 66.39	0	5273..5632	+	119	55376947	-	rrnAC0005	-	hypothetical protein
6	 65.53	0	5679..6470	-	263	55376948	-	rrnAC0006	-	putative DNA binding protein
7	 65.34	0	6695..7675	+	326	55376949	-	rrnAC0008	-	hypothetical protein
8	 55.56	-1	7797..8012	+	71	55376950	-	rrnAC0009	-	hypothetical protein
9	 61.29	0	8146..9483	-	445	55376951	nac	rrnAC0010	-	sodium-and chloride-dependent transporter
10	 62.87	0	9707..10417	-	236	55376952	ywfD1	rrnAC0011	-	glucose 1-dehydrogenase
11	 68.42	+1	10513..11595	-	360	55376953	adh11	rrnAC0012	-	zinc-binding dehydrogenase
12	 60.94	0	11747..14068	+	773	55376954	htr	rrnAC0013	-	MCP domain-containing signal transducer
13	 62.17	0	14071..14781	+	236	55376955	sop2	rrnAC0014	-	sensory rhodopsin 1
14	 56.76	-1	14920..15252	-	110	55376956	-	rrnAC0015	-	hypothetical protein
15	 62.71	0	15396..16355	-	319	55376957	tfbA	rrnAC0016	-	transcription initiation factor IIB
16	 61.52	0	16621..17145	+	174	55376958	-	rrnAC0017	-	hypothetical protein
17	 65.98	0	17142..17867	+	241	55376959	trmH	rrnAC0018	-	RNA methyltransferase
18	 61.82	0	17871..20345	-	824	55376960	boa	rrnAC0019	-	bacterio-opsin activator-like protein
19	 59.51	0	20648..21136	+	162	55376961	-	rrnAC0020	-	hypothetical protein
20	 58.57	-1	21198..21617	+	139	55376962	-	rrnAC0022	-	hypothetical protein
21	 65.87	0	21614..23485	-	623	55376963	gatE	rrnAC0023	-	glutamyl-tRNA(Gln) amidotransferase subunit E
22	 63.14	0	23574..24368	+	264	55376964	-	rrnAC0024	-	hypothetical protein
23	 56.57	-1	24403..24699	-	98	55376965	-	rrnAC0025	-	hypothetical protein
24	 60.12	0	24858..25361	+	167	55376966	hat7	rrnAC0026	-	putative acetyltransferase
25	 63.47	0	25739..27145	-	468	55376967	fumC	rrnAC0028	-	fumarate hydratase
26	 61.31	0	27708..28772	+	354	55376968	-	rrnAC0029	-	sugar ABC transporter permease protein
27	 61.29	0	28769..29698	+	309	55376969	yurM	rrnAC0030	-	ABC transporter permease protein
28	 61.14	0	29716..30855	+	379	55376970	ugpC3	rrnAC0031	-	sugar ABC transporter ATP-binding protein (UGPC)
29	 62.90	0	30913..31893	-	326	55376971	rad2	rrnAC0032	-	flap endonuclease-1
30	 66.85	+1	31982..32530	-	182	55376972	-	rrnAC0034	-	hypothetical protein
31	 63.77	0	32642..33055	+	137	55376973	-	rrnAC0035	-	hypothetical protein
32	 53.19	-2	33092..33373	-	93	55376974	-	rrnAC0036	-	hypothetical protein
33	 60.61	0	33736..33966	+	76	55376975	-	rrnAC0037	-	hypothetical protein
34	 65.67	0	34084..35091	+	335	55376976	ocd1	rrnAC0038	-	ornithine cyclodeaminase
35	 62.31	0	35110..36141	-	343	55376977	-	rrnAC0039	-	hypothetical protein
36	 67.11	+1	36216..36443	-	75	55376978	-	rrnAC0040	-	H/ACA RNA-protein complex component Gar1
37	 62.83	0	36440..36778	-	112	55376979	srp19	rrnAC0041	-	signal recognition particle 19 kDa protein
38	 58.40	-1	36841..37602	+	253	55376980	-	rrnAC0042	-	hypothetical protein
39	 61.55	0	38051..38812	-	253	55376981	coxB1	rrnAC0043	-	cytochrome c oxidase subunit II
40	 64.87	0	38955..40346	+	463	55376982	ctaB	rrnAC0044	-	heme synthase
41	 63.11	0	40343..41044	+	233	55376983	trp4	rrnAC0045	-	ABC transporter ATP-binding protein-like
42	 58.33	-1	41076..41315	+	79	55376984	-	rrnAC0046	-	hypothetical protein
43	 55.56	-1	41425..41532	+	35	55376985	-	rrnAC0047	-	hypothetical protein
44	 65.29	0	41588..42529	+	313	55376986	-	rrnAC0048	-	ABC transporter ATP-binding protein
45	 66.40	0	42526..43266	+	246	55376987	-	rrnAC0049	-	ABC transporter ATPase
46	 64.07	0	43285..43824	-	179	55376988	-	rrnAC0050	-	hypothetical protein
47	 65.16	0	43986..44978	+	330	55376989	-	rrnAC0051	-	LPPG:FO 2-phospho-L-lactate transferase
48	 67.20	+1	44978..45724	+	248	55376990	dpd	rrnAC0052	-	dihydropyrimidine dehydrogenase
49	 67.50	+1	45844..46560	+	238	55376991	citG	rrnAC0053	-	CitG family protein
50	 66.83	0	46557..47183	+	208	55376992	-	rrnAC0054	-	hypothetical protein
51	 56.77	-1	47375..47566	+	63	55376993	rps17E	rrnAC0055	-	30S ribosomal protein S17e
52	 64.31	0	47629..48690	-	353	55376994	mrp1	rrnAC0056	-	Mrp protein-like
53	 63.00	0	48889..49188	-	99	55376995	-	rrnAC0057	-	hypothetical protein
54	 62.36	0	49512..50045	+	177	55376996	rps13p	rrnAC0058	-	30S ribosomal protein S13P
55	 63.76	0	50045..50560	+	171	55376997	rps4p	rrnAC0059	-	30S ribosomal protein S4
56	 65.13	0	50557..50946	+	129	55376998	rps11p	rrnAC0061	-	30S ribosomal protein S11P
57	 64.62	0	50950..51729	+	259	55376999	rpoD	rrnAC0062	-	DNA-directed RNA polymerase subunit D
58	 60.68	0	51943..52293	+	116	55377000	rpl18E	rrnAC0064	-	50S ribosomal protein L18e
59	 60.27	0	52290..52727	+	145	55377001	rpl13p	rrnAC0065	-	50S ribosomal protein L13P
60	 65.66	0	52721..53119	+	132	55377002	rps9p	rrnAC0066	-	30S ribosomal protein S9P
61	 61.19	0	53132..53332	+	66	55377003	rpoN	rrnAC0067	-	DNA-directed RNA polymerase subunit N
62	 60.92	0	53329..53502	+	57	55377004	rpoK	rrnAC0068	-	DNA-directed RNA polymerase subunit K
63	 65.34	0	53505..54710	+	401	55377005	eno	rrnAC0069	-	phosphopyruvate hydratase
64	 65.42	0	54707..55510	+	267	55377006	rps2P	rrnAC0070	-	30S ribosomal protein S2
65	 62.76	0	55610..55993	+	127	55377007	-	rrnAC0071	-	hypothetical protein
66	 65.88	0	56052..56432	+	126	55377008	-	rrnAC0072	-	hypothetical protein
67	 63.75	0	56503..57840	+	445	55377009	cyc	rrnAC0073	-	cytochrome P450
68	 57.47	-1	58045..58218	+	57	55377010	-	rrnAC0074	-	hypothetical protein
69	 61.03	0	58215..60395	+	726	55377011	htlD	rrnAC0075	-	HTR-like protein
70	 66.97	+1	60463..61446	+	327	55377012	mvk	rrnAC0077	-	mevalonate kinase
71	 68.79	+1	61443..62195	+	250	55377013	argB1	rrnAC0078	-	acetylglutamate kinase
72	 65.53	0	62369..63859	+	496	55377014	-	rrnAC0079	-	hypothetical protein
73	 61.24	0	64088..65470	+	460	55377015	-	rrnAC0080	-	hydrolase
74	 64.84	0	65475..66515	+	346	55377016	idsA	rrnAC0081	-	geranylgeranyl diphosphate synthase
75	 66.03	0	66518..67783	+	421	55377017	-	rrnAC0082	-	hypothetical protein
76	 64.22	0	68130..68783	+	217	55377018	arsA1	rrnAC0083	-	arsenical pump-driving ATPase
77	 65.75	0	68964..70703	+	579	55377019	gltX	rrnAC0085	-	glutamyl-tRNA synthetase
78	 63.84	0	70712..73150	-	812	55377020	htlD	rrnAC0086	-	HTR-like protein
79	 62.37	0	73404..73775	+	123	55377021	hsp5	rrnAC0087	-	heat shock protease protein
80	 67.78	+1	73920..74903	+	327	55377022	lipC	rrnAC0088	-	lipase/esterase
81	 61.82	0	74953..75282	+	109	55377023	ferB	rrnAC0089	-	ferredoxin
82	 61.75	0	75487..76341	+	284	55377024	etfB2	rrnAC0090	-	electron transfer flavoprotein beta subunit
83	 62.28	0	76344..78008	+	554	55377025	etfA1	rrnAC0091	-	electron transfer flavoprotein alpha subunit
84	 67.39	+1	78001..79662	+	553	55377026	ydiS	rrnAC0094	-	flavoprotein
85	 66.94	+1	79674..80033	+	119	55377027	-	rrnAC0095	-	hypothetical protein
86	 62.30	0	80102..80833	+	243	55377028	hat-1	rrnAC0096	-	acetyl transferase
87	 64.21	0	80830..81804	-	324	55377029	mer3	rrnAC0097	-	N5N10-methylenetetrahydromethanopterin reductase
88	 62.73	0	81880..83481	-	533	55377030	alkK1	rrnAC0098	-	medium-chain acyl-CoA ligase
89	 67.88	+1	83605..83769	-	54	55377031	-	rrnAC0099	-	hypothetical protein
90	 67.47	+1	83766..84263	-	165	55377032	-	rrnAC0100	-	hypothetical protein
91	 68.64	+1	84260..86587	-	775	55377034	-	rrnAC0101	-	hypothetical protein
92	 69.53	+1	86586..87599	+	337	55377033	npd	rrnAC0102	-	2-nitropropane dioxygenase-related protein
93	 63.36	0	87813..88175	+	120	55377035	rpl7ae	rrnAC0103	-	50S ribosomal protein L7Ae
94	 65.81	0	88417..88767	+	116	55377036	rpl24E	rrnAC0104	-	50S ribosomal protein L24e
95	 63.23	0	88767..89231	+	154	55377037	ndk	rrnAC0106	-	nucleoside diphosphate kinase
96	 62.79	0	89297..89554	+	85	55377038	-	rrnAC0107	-	glutaredoxin-like
97	 62.41	0	89527..89667	-	46	55377039	-	rrnAC0108	-	hypothetical protein
98	 59.01	0	90289..90693	-	134	55377040	msrB	rrnAC0109	-	peptide methionine sulfoxide reductase msrB
99	 60.19	0	90823..92505	-	560	55377041	betA	rrnAC0110	-	GMC family oxidoreductase
100	 59.81	0	92502..93128	-	208	55377042	-	rrnAC0111	-	hypothetical protein
62.75	MEAN

4.09	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.